Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.1e-187 659.8 325 100.0
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 5.4e-176 620.9 325 95.1
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.6e-175 617.8 326 93.9
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.0e-174 616.7 326 93.6
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 5.6e-173 610.9 325 93.5
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 1.4e-144 516.5 325 78.8
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 1.4e-142 510.0 332 77.1
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 1.4e-134 483.4 320 74.4
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.3e-129 466.8 316 71.5
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 1.9e-128 463.0 323 69.3
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 7.2e-128 461.1 350 68.3
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 8.0e-127 457.6 325 68.6
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 2.3e-126 456.1 314 70.7
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 5.2e-126 454.9 316 69.6
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 8.2e-124 447.6 318 69.8
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.8e-123 446.4 323 69.3
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 2.4e-123 446.0 325 66.2
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 3.1e-123 445.7 321 68.8
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 1.6e-122 443.4 310 70.0
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 1.6e-122 443.4 314 67.8
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 2.0e-122 443.0 324 68.8
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 1.0e-121 440.7 325 68.0
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 1.1e-120 437.2 324 67.3
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 1.5e-120 436.8 307 68.4
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.2e-120 435.3 318 67.0
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 9.4e-120 434.1 322 66.8
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.0e-118 430.6 323 66.6
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.0e-118 430.6 323 66.6
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.3e-118 429.5 323 66.3
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 5.2e-118 428.3 339 63.4
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 6.8e-118 427.9 315 66.3
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 9.8e-117 424.1 324 66.0
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 1.3e-116 423.7 302 68.9
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 3.7e-116 422.2 315 65.4
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 8.3e-116 421.0 322 62.7
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 1.8e-115 419.9 337 63.5
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 7.0e-115 417.9 307 68.1
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 2.7e-114 416.0 317 65.0
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 7.7e-114 414.5 321 64.8
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 1.3e-113 413.7 326 64.4
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 6.5e-113 411.4 315 65.1
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 4.2e-112 408.7 313 65.5
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 5.5e-112 408.3 323 63.5
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 5.5e-112 408.3 318 65.1
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.2e-111 407.1 324 60.8
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 8.0e-111 404.4 321 62.3
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 8.0e-111 404.4 319 64.6
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 1.0e-110 404.1 315 62.5
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 5.2e-110 401.7 326 60.4
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 5.2e-110 401.7 311 61.1
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.8e-110 401.4 310 65.5
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.8e-110 401.4 310 65.5
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.8e-110 401.4 310 65.5
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 6.8e-110 401.4 310 65.5
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 8.8e-110 401.0 338 61.8
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 8.8e-110 401.0 321 62.0
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 1.2e-109 400.6 302 66.2
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 2.0e-109 399.8 307 64.5
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.6e-109 399.4 310 65.2
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 2.6e-109 399.4 318 63.8
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 5.7e-109 398.3 335 61.5
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 1.3e-108 397.1 330 59.7
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 4.1e-107 392.1 317 63.7
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.6e-106 390.2 328 59.8
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 3.5e-106 389.0 322 59.6
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 2.9e-105 386.0 322 59.6
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 6.6e-105 384.8 306 63.4
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 6.6e-105 384.8 258 74.0
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 2.5e-104 382.9 314 64.0
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 2.5e-104 382.9 317 62.5
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 5.6e-104 381.7 301 62.1
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 7.3e-104 381.3 314 64.0
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 7.3e-104 381.3 314 64.0
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 1.2e-103 380.6 301 61.8
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 1.2e-103 380.6 224 83.5
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.4e-102 377.1 405 51.1
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 4.9e-100 368.6 336 58.9
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 1.4e-99 367.1 308 58.4
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 2.4e-99 366.3 311 60.5
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 7.0e-99 364.8 258 68.2
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.4e-91 340.5 324 55.6
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 4.1e-91 339.0 330 57.0
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 8.9e-86 321.2 258 64.0
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 1.3e-84 317.4 318 51.9
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 2.9e-84 316.2 305 53.1
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 7.1e-83 311.6 271 59.4
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 9.2e-83 311.2 238 63.0
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 1.3e-81 307.4 312 51.9
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 5.1e-81 305.4 289 56.1
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 6.0e-74 282.0 307 48.5
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 1.3e-73 280.8 322 51.9
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 8.6e-73 278.1 301 48.2
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 1.6e-71 273.9 227 58.6
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 6.2e-71 271.9 277 52.0
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 3.5e-66 256.1 250 52.4
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 1.3e-65 254.2 204 65.7
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 6.6e-65 251.9 203 65.5
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.7e-65 251.5 204 62.3
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.3e-64 249.2 201 62.2
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.6e-63 247.3 201 62.2
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-63 246.1 201 62.2
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-63 246.1 204 60.3
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 6.2e-63 245.4 201 61.2
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 5.8e-61 238.8 296 44.9
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 9.9e-61 238.0 221 52.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 9.3e-59 231.5 240 50.4
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 1.0e-57 228.0 248 48.8
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.6e-55 219.5 201 57.2
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 4.8e-55 219.2 205 55.1
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 1.6e-50 204.1 217 52.1
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.5e-50 203.0 204 53.4
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.5e-42 176.4 104 78.8
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 3.5e-42 176.4 105 77.1
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 7.9e-42 175.3 104 77.9
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.0e-41 173.3 123 67.5
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 6.7e-41 172.2 121 68.6
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 1.9e-40 170.6 316 35.4
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.3e-39 167.9 302 36.8
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 7.6e-37 158.7 102 75.5
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.0e-36 156.0 103 72.8
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.1e-35 154.8 200 42.0
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 4.6e-34 149.4 139 58.3
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.3e-31 141.4 220 39.5
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 4.5e-29 132.9 285 32.3
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 3.2e-27 126.7 116 54.3
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.8e-23 113.6 62 80.6
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 6.3e-23 112.5 300 29.3
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 6.9e-22 109.0 90 61.1
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 6.9e-22 109.0 90 61.1
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 7.0e-14 82.4 45 80.0
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 3.7e-07 60.1 39 71.8
QL02p029395 Quercus lobata HOM05D002431 ORTHO05D002543 6.3e-07 59.3 104 40.4


User provided reference genes

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