Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.1e-168 595.1 320 100.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.2e-156 556.6 326 93.9
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.0e-155 553.5 326 92.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 7.6e-138 494.2 326 85.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 4.6e-127 458.4 331 75.2
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 8.1e-124 447.6 337 73.6
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 1.7e-121 439.9 344 73.0
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.1e-115 420.6 264 81.1
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.4e-115 419.5 327 67.9
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 5.3e-115 418.3 313 70.9
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 6.9e-115 417.9 330 68.8
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.2e-114 417.2 319 69.6
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-112 410.6 249 81.9
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.4e-112 409.5 249 81.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.2e-112 409.1 257 79.8
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 3.2e-112 409.1 249 80.7
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 4.2e-112 408.7 249 81.5
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 2.1e-111 406.4 249 81.5
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 3.5e-111 405.6 249 79.5
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.0e-110 404.1 331 65.9
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.0e-110 404.1 306 70.6
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.8e-110 403.3 265 75.8
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.1e-109 400.6 248 81.5
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 1.1e-109 400.6 250 78.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.9e-109 399.8 249 78.7
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.3e-109 399.1 332 64.8
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 4.3e-109 398.7 246 79.7
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 5.6e-109 398.3 333 64.9
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 9.6e-109 397.5 246 78.5
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.6e-108 396.7 248 77.8
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 1.6e-108 396.7 246 78.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 2.8e-108 396.0 249 77.1
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.8e-108 396.0 319 66.5
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.8e-108 396.0 249 77.9
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.7e-108 395.6 247 78.9
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.7e-108 395.6 245 79.2
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.7e-108 395.6 245 79.2
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 3.7e-108 395.6 249 78.7
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 1.1e-107 394.0 319 65.8
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.1e-107 394.0 256 77.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 1.8e-107 393.3 344 64.2
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 1.8e-107 393.3 246 78.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 2.4e-107 392.9 246 78.5
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 6.9e-107 391.3 246 78.0
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.2e-106 390.6 249 77.5
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.2e-106 390.6 256 77.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.0e-106 389.8 358 62.6
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 2.0e-106 389.8 245 77.6
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 2.6e-106 389.4 248 76.6
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 3.4e-106 389.0 289 70.2
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 4.5e-106 388.7 246 78.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 5.8e-106 388.3 246 77.2
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.6e-106 387.9 248 75.4
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 1.3e-105 387.1 247 77.3
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 1.7e-105 386.7 248 75.0
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.7e-105 386.7 336 61.9
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.2e-105 386.3 333 63.4
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 1.1e-104 384.0 248 75.4
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.4e-104 383.6 249 73.9
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 2.5e-104 382.9 324 62.7
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 7.1e-104 381.3 261 71.3
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.5e-103 379.0 245 75.1
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.3e-102 377.1 325 61.8
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.8e-102 376.7 301 65.1
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.0e-102 375.9 246 74.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.9e-102 375.6 332 60.8
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.9e-101 373.2 245 73.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 7.4e-101 371.3 249 71.9
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 9.6e-101 370.9 299 63.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.3e-100 370.5 259 70.7
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.6e-100 370.2 245 73.1
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 2.1e-100 369.8 302 62.9
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 3.7e-100 369.0 257 72.0
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 8.2e-100 367.9 251 71.7
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 1.1e-99 367.5 308 65.3
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.1e-99 367.5 316 63.3
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 3.1e-99 365.9 296 65.5
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 3.1e-99 365.9 308 64.0
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-98 364.0 254 71.7
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.5e-98 363.6 245 73.9
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 3.4e-98 362.5 253 71.5
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 3.4e-98 362.5 253 71.5
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 3.4e-98 362.5 253 71.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 5.9e-98 361.7 309 60.5
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 5.9e-98 361.7 253 72.7
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 1.3e-97 360.5 248 72.6
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.3e-97 360.5 316 62.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.3e-97 360.5 264 68.9
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 2.9e-97 359.4 324 60.2
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 8.5e-97 357.8 264 68.2
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.1e-96 357.5 308 62.7
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 3.2e-96 355.9 295 64.4
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.4e-91 340.5 267 70.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 5.5e-88 328.6 243 65.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 2.7e-87 326.2 243 65.0
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 3.6e-87 325.9 243 65.0
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 4.6e-87 325.5 248 65.7
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 3.9e-86 322.4 308 55.8
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 9.7e-85 317.8 211 75.4
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.6e-79 300.4 200 71.5
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 6.1e-79 298.5 256 61.3
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 3.3e-77 292.7 168 88.7
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.4e-75 287.3 246 61.4
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 9.1e-75 284.6 205 76.6
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.6e-71 272.7 252 52.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 2.0e-69 266.9 262 51.1
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-69 266.5 202 74.3
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 1.4e-67 260.8 247 51.8
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.3e-57 227.6 252 48.0
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 2.8e-55 219.9 139 75.5
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 1.4e-54 217.6 205 52.7
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.5e-48 197.6 170 60.6
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 8.0e-47 191.8 210 51.4
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 4.4e-45 186.0 180 62.8
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-44 184.5 107 87.9
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 2.9e-44 183.3 163 62.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.4e-44 182.2 118 75.4
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.6e-39 166.4 184 52.7
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 8.9e-38 161.8 161 68.9
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 7.5e-37 158.7 109 70.6
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 2.9e-36 156.8 109 68.8
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 4.6e-34 149.4 104 67.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 5.6e-32 142.5 80 88.8
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 8.1e-31 138.7 109 60.6
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 3.1e-30 136.7 106 61.3
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 8.9e-30 135.2 93 71.0
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.0e-29 134.0 75 86.7
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.4e-29 133.3 93 71.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.7e-26 123.6 119 61.3
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 1.3e-25 121.3 244 30.7
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 4.4e-21 106.3 80 65.0
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.1e-19 101.7 157 39.5
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.1e-19 101.7 82 65.9
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.6e-18 97.8 56 83.9
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 5.1e-17 92.8 50 86.0
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.6e-17 92.4 56 80.4
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.3e-16 89.7 241 31.1
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.3e-16 89.7 147 36.7
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 6.2e-15 85.9 99 54.5
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.9e-14 82.4 246 28.9
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 7.1e-11 72.4 155 32.3
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 3.0e-09 67.0 47 72.3
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 1.9e-08 64.3 60 53.3
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.5e-08 63.9 48 52.1


User provided reference genes

Program Settings