Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.4e-158 561.6 285 100.0
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 6.7e-154 547.4 286 97.6
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.7e-154 547.4 286 97.6
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.1e-153 546.6 286 97.6
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 8.2e-152 540.4 286 96.9
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 7.4e-145 517.3 286 92.7
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 6.1e-115 417.9 307 73.9
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 4.1e-111 405.2 307 71.3
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.3e-109 400.2 308 70.5
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.3e-101 373.6 297 65.7
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.1e-100 370.5 301 64.5
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 1.5e-100 370.2 290 66.9
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.9e-100 369.8 291 67.7
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.6e-99 365.5 300 64.0
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 3.6e-99 365.5 292 64.4
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.4e-98 363.6 302 63.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.0e-98 362.1 290 64.8
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 5.2e-98 361.7 296 63.5
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 6.8e-98 361.3 298 63.8
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.2e-97 360.5 297 64.3
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.6e-97 359.4 297 64.0
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 5.8e-97 358.2 294 64.3
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 9.8e-97 357.5 315 61.3
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.7e-96 356.7 298 63.1
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 3.7e-96 355.5 315 61.3
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 6.4e-96 354.8 306 61.8
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 6.4e-96 354.8 302 62.6
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.9e-95 353.2 305 59.0
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.9e-95 353.2 301 60.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 2.4e-95 352.8 315 61.0
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.4e-95 352.8 294 63.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.2e-94 350.5 297 62.3
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.2e-94 350.5 292 64.7
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 2.1e-94 349.7 298 61.7
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 6.0e-94 348.2 290 63.1
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 7.8e-94 347.8 291 62.9
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.0e-93 347.4 294 62.6
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.0e-93 347.4 295 62.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 1.7e-93 346.7 294 62.9
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 3.0e-93 345.9 295 62.4
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 3.0e-93 345.9 292 63.7
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 5.0e-93 345.1 297 61.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.1e-92 344.0 282 63.1
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.1e-92 344.0 303 62.0
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.5e-92 343.6 282 62.1
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.5e-92 343.6 297 63.0
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 3.3e-92 342.4 298 61.4
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 4.3e-92 342.0 290 61.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 5.6e-92 341.7 287 61.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 3.6e-91 339.0 289 61.9
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 3.6e-91 339.0 291 60.5
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 4.7e-91 338.6 311 58.8
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 6.2e-91 338.2 278 62.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.3e-90 336.3 295 61.4
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.1e-90 335.9 307 58.6
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 8.9e-90 334.3 300 58.0
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.5e-89 333.6 286 60.8
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 5.8e-89 331.6 308 57.8
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.7e-88 330.1 296 59.1
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 8.3e-88 327.8 284 61.6
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.7e-86 322.8 298 59.1
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 2.7e-86 322.8 296 58.1
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 4.6e-86 322.0 283 62.5
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.9e-85 318.9 293 56.0
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.1e-84 317.4 295 55.6
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 1.1e-84 317.4 298 55.4
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 5.6e-84 315.1 297 55.9
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 9.5e-84 314.3 290 58.3
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 6.2e-83 311.6 295 55.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.4e-82 309.7 306 55.2
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.8e-82 308.1 292 55.8
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 6.8e-82 308.1 292 55.8
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 6.8e-82 308.1 285 58.2
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 8.9e-82 307.8 245 64.9
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 2.0e-81 306.6 284 57.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 5.8e-81 305.1 294 54.8
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 5.8e-81 305.1 284 57.0
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 9.9e-81 304.3 287 56.4
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 9.9e-81 304.3 287 56.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.3e-80 303.9 292 55.5
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 1.3e-80 303.9 289 56.1
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.8e-80 302.4 286 56.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 4.9e-80 302.0 305 53.4
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.1e-79 300.8 294 54.8
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.4e-79 300.4 276 58.3
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 5.4e-79 298.5 290 56.2
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 9.2e-79 297.7 279 56.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 6.0e-78 295.0 292 54.5
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.3e-77 293.9 294 55.1
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.7e-77 293.5 275 57.1
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 5.1e-77 292.0 287 54.4
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 1.5e-76 290.4 307 50.2
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.8e-75 286.2 267 58.1
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 3.6e-75 285.8 276 59.4
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 2.0e-73 280.0 263 57.4
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 4.4e-73 278.9 278 55.0
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 8.4e-72 274.6 299 52.2
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.9e-68 263.5 275 50.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 6.9e-66 255.0 281 50.2
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.0e-65 253.4 276 52.9
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 3.4e-65 252.7 276 51.1
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 7.6e-65 251.5 288 52.1
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.4e-63 247.3 237 59.5
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 8.4e-56 221.5 238 53.8
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 2.5e-55 219.9 297 42.4
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 4.6e-54 215.7 146 70.5
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 3.3e-52 209.5 323 41.2
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 1.8e-50 203.8 245 49.0
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 4.0e-50 202.6 144 63.9
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 9.0e-50 201.4 236 49.2
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 4.2e-47 192.6 320 39.7
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 3.5e-46 189.5 319 39.5
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 3.3e-44 183.0 228 47.4
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 9.7e-44 181.4 228 46.9
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 2.6e-41 173.3 205 45.4
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 4.2e-39 166.0 132 60.6
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 2.2e-35 153.7 104 71.2
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 9.4e-31 138.3 411 27.7
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.8e-29 134.0 206 39.8
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.0e-29 133.3 83 74.7
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.6e-25 120.2 86 70.9
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 2.2e-24 117.1 75 69.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 7.4e-20 102.1 374 26.7
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 1.3e-19 101.3 154 40.9
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.1e-18 98.2 336 26.8
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 1.4e-18 97.8 158 44.3
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.3e-16 91.3 97 53.6
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 6.5e-16 89.0 113 43.4
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 1.7e-11 74.3 326 25.5
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 1.3e-08 64.7 108 42.6
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 5.5e-07 59.3 48 52.1
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 5.5e-07 59.3 48 52.1


User provided reference genes

Program Settings