Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1117 Fragaria x ananassa HOM05D004718 ORTHO05D046641 3.8e-60 234.6 112 100.0
FvH4_2g30650 Fragaria vesca HOM05D004718 ORTHO05D005838 1.0e-33 146.7 102 71.6
FAN27G1892 Fragaria x ananassa HOM05D004718 ORTHO05D005838 2.3e-33 145.6 102 70.6
FAN20G1074 Fragaria x ananassa HOM05D003231 ORTHO05D005838 1.3e-31 139.8 102 68.6
RcHm_v2.0_Chr6g0312311 Rosa chinensis HOM05D004718 ORTHO05D005838 1.8e-30 136.0 103 68.9
RcHm_v2.0_Chr6g0312261 Rosa chinensis HOM05D004718 ORTHO05D005838 2.0e-29 132.5 103 67.0
MD15G1110500 Malus domestica HOM05D004718 ORTHO05D005838 5.9e-29 131.0 103 62.1
MD08G1133600 Malus domestica HOM05D004718 ORTHO05D005838 1.7e-28 129.4 103 62.1
Prupe.1G462800 Prunus persica HOM05D004718 ORTHO05D005838 3.8e-28 128.3 103 61.2
Haze_21689 Corylus avellana HOM05D004718 ORTHO05D005838 2.6e-24 115.5 111 54.1
GSVIVG01035602001 Vitis vinifera HOM05D004718 ORTHO05D005838 3.5e-21 105.1 107 49.5
QL12p024639 Quercus lobata HOM05D004718 ORTHO05D005838 1.0e-20 103.6 111 47.7
Glyma.17G201000 Glycine max HOM05D004718 ORTHO05D005838 2.2e-20 102.4 111 48.6
Glyma.14G132500 Glycine max HOM05D004718 ORTHO05D005838 2.9e-20 102.1 111 46.8
TWI32G0049 Tripterygium wilfordii HOM05D004718 ORTHO05D005838 2.9e-20 102.1 107 45.8
CSS0022336 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 3.8e-20 101.7 107 48.6
CSS0012298 Camellia sinensis var. sinensis HOM05D004718 ORTHO05D005838 5.0e-20 101.3 107 48.6
Hund19371 Selenicereus undatus HOM05D004718 ORTHO05D005838 1.1e-19 100.1 107 48.6
Rhsim04G0220700 Rhododendron simsii HOM05D004718 ORTHO05D005838 1.5e-19 99.8 117 42.7
Psat6g031760 Pisum sativum HOM05D004718 ORTHO05D005838 1.9e-19 99.4 105 45.7
Nn8g40158 Nelumbo nucifera HOM05D004718 ORTHO05D005838 2.5e-19 99.0 123 43.9
Atru.chr12.843 Acer truncatum HOM05D004718 ORTHO05D005838 4.2e-19 98.2 107 46.7
Glyma.04G074300 Glycine max HOM05D004718 ORTHO05D005838 4.2e-19 98.2 111 45.9
VMungo1309G0968 Vigna mungo HOM05D004718 ORTHO05D005838 4.2e-19 98.2 111 45.9
CiPaw.07G215000 Carya illinoinensis HOM05D004718 ORTHO05D005838 5.5e-19 97.8 111 46.8
Phvul.009G100000 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 5.5e-19 97.8 111 45.0
TPR.G1019 Trifolium pratense HOM05D004718 ORTHO05D005838 5.5e-19 97.8 106 48.1
Eucgr.E04340 Eucalyptus grandis HOM05D004718 ORTHO05D005838 9.4e-19 97.1 103 46.6
Medtr3g108660 Medicago truncatula HOM05D004718 ORTHO05D005838 1.2e-18 96.7 111 45.9
Dinv09445 Davidia involucrata HOM05D004718 ORTHO05D005838 1.6e-18 96.3 106 47.2
Lj5g0017014 Lotus japonicus HOM05D004718 ORTHO05D005838 1.6e-18 96.3 111 45.0
Ca_12884_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 3.6e-18 95.1 111 45.0
Glyma.06G075500 Glycine max HOM05D004718 ORTHO05D005838 3.6e-18 95.1 105 45.7
Lalb_Chr14g0362131 Lupinus albus HOM05D004718 ORTHO05D005838 4.7e-18 94.7 105 47.6
CANSAT25G2838 Cannabis sativa HOM05D004718 ORTHO05D005838 6.1e-18 94.4 107 45.8
Lj7A755G38 Lonicera japonica HOM05D004718 ORTHO05D005838 6.1e-18 94.4 106 47.2
Medtr1g010040 Medicago truncatula HOM05D004718 ORTHO05D005838 6.1e-18 94.4 111 45.0
ECA240G2491 Erigeron canadensis HOM05D004718 ORTHO05D005838 8.0e-18 94.0 108 42.6
Ah.11g044230 Amaranthus hybridus HOM05D004718 ORTHO05D005838 1.0e-17 93.6 108 45.4
Hma1.2p1_0147F.1_g065850 Hydrangea macrophylla HOM05D004718 ORTHO05D005838 1.0e-17 93.6 105 45.7
Psat5g025880 Pisum sativum HOM05D004718 ORTHO05D005838 1.0e-17 93.6 113 44.2
Ciclev10007306m.g Citrus clementina HOM05D004718 ORTHO05D005838 1.4e-17 93.2 107 43.0
Duzib168G2024 Durio zibethinus HOM05D004718 ORTHO05D005838 1.4e-17 93.2 105 47.6
Manes.18G079200 Manihot esculenta HOM05D004718 ORTHO05D005838 1.4e-17 93.2 108 44.4
CAN.G30.25 Capsicum annuum HOM05D004718 ORTHO05D005838 1.8e-17 92.8 108 46.3
Lalb_Chr08g0243651 Lupinus albus HOM05D004718 ORTHO05D005838 1.8e-17 92.8 111 42.3
Sc06g0001390 Simmondsia chinensis HOM05D004718 ORTHO05D005838 1.8e-17 92.8 107 42.1
arahy.Tifrunner.gnm1.ann1.N8XBBJ Arachis hypogaea HOM05D004718 ORTHO05D005838 2.3e-17 92.4 111 44.1
arahy.Tifrunner.gnm1.ann1.7TNR6F Arachis hypogaea HOM05D004718 ORTHO05D005838 3.0e-17 92.0 111 44.1
Thecc.09G001900 Theobroma cacao HOM05D004718 ORTHO05D005838 3.0e-17 92.0 107 45.8
Gohir.D13G185401 Gossypium hirsutum HOM05D004718 ORTHO05D005838 4.0e-17 91.7 105 44.8
Gorai.013G211400 Gossypium raimondii HOM05D004718 ORTHO05D005838 4.0e-17 91.7 105 44.8
MBI07_g41265_MAGBIO Magnolia biondii HOM05D004718 ORTHO05D005838 4.0e-17 91.7 101 46.5
PGR142G1098 Punica granatum HOM05D004718 ORTHO05D005838 5.2e-17 91.3 121 40.5
EL10Ac2g03649 Beta vulgaris HOM05D004718 ORTHO05D005838 6.7e-17 90.9 101 46.5
TAR624G0199 Trochodendron aralioides HOM05D004718 ORTHO05D005838 6.7e-17 90.9 105 44.8
COL.COLO4_18636 Corchorus olitorius HOM05D004718 ORTHO05D005838 8.8e-17 90.5 107 44.9
TPR.G12432 Trifolium pratense HOM05D004718 ORTHO05D005838 8.8e-17 90.5 106 45.3
Ca_15681_v3 Cicer arietinum L. HOM05D004718 ORTHO05D005838 1.5e-16 89.7 111 42.3
Phvul.001G057700 Phaseolus vulgaris HOM05D004718 ORTHO05D005838 1.5e-16 89.7 113 41.6
Aqoxy7G00911 Aquilegia oxysepala HOM05D004718 ORTHO05D005838 4.4e-16 88.2 107 41.1
Gohir.A13G181900 Gossypium hirsutum HOM05D004718 ORTHO05D005838 4.4e-16 88.2 105 43.8
Actinidia03322 Actinidia chinensis HOM05D004718 ORTHO05D005838 1.3e-15 86.7 107 40.2
Potri.005G179500 Populus trichocarpa HOM05D004718 ORTHO05D005838 1.7e-15 86.3 107 42.1
AUR62028027 Chenopodium quinoa HOM05D004718 ORTHO05D005838 2.8e-15 85.5 116 41.4
Cpa.g.sc42.62 Carica papaya HOM05D004718 ORTHO05D005838 3.7e-15 85.1 101 43.6
AUR62020697 Chenopodium quinoa HOM05D004718 ORTHO05D005838 3.7e-15 85.1 116 42.2
Lsat_1_v5_gn_5_59280 Lactuca sativa HOM05D004718 ORTHO05D005838 3.7e-15 85.1 108 40.7
PSO063G2513 Papaver somniferum HOM05D004718 ORTHO05D005838 6.3e-15 84.3 99 46.5
PSO541G2610 Papaver somniferum HOM05D004718 ORTHO05D005838 8.2e-15 84.0 104 41.3
Nitab4.5_0000964g0050 Nicotiana tabacum HOM05D004718 ORTHO05D005838 1.1e-14 83.6 107 43.0
ATR0006G074 Amborella trichopoda HOM05D004718 ORTHO05D005838 1.8e-14 82.8 97 44.3
Potri.002G081600 Populus trichocarpa HOM05D004718 ORTHO05D005838 2.4e-14 82.4 107 41.1
TPR.G36582 Trifolium pratense HOM05D004718 ORTHO05D005838 3.1e-14 82.0 98 45.9
CsaV3_2G031540 Cucumis sativus L. HOM05D004718 ORTHO05D005838 4.1e-14 81.6 109 42.2
ClCG08G012790 Citrullus lanatus HOM05D004718 ORTHO05D005838 5.3e-14 81.3 100 45.0
HanXRQChr03g0082331 Helianthus annuus HOM05D004718 ORTHO05D005838 5.3e-14 81.3 106 38.7
Thhalv10010085m.g Eutrema salsugineum HOM05D004718 ORTHO05D005838 7.0e-14 80.9 100 42.0
Sabra02G0063900 Salix brachista HOM05D004718 ORTHO05D005838 7.0e-14 80.9 107 41.1
Sp5g12510 Schrenkiella parvula HOM05D004718 ORTHO05D005838 7.0e-14 80.9 102 44.1
Oeu047653.1 Olea europaea HOM05D004718 ORTHO05D005838 9.1e-14 80.5 100 39.0
PSO421G0298 Papaver somniferum HOM05D004718 ORTHO05D005838 9.1e-14 80.5 104 41.3
Aa31LG4G18090 Aethionema arabicum HOM05D004718 ORTHO05D005838 1.6e-13 79.7 104 40.4
AT3G49600 Arabidopsis thaliana HOM05D004718 ORTHO05D005838 1.6e-13 79.7 101 39.6
Cc07_g17410 Coffea canephora HOM05D004718 ORTHO05D005838 1.6e-13 79.7 106 40.6
PSO017G4020 Papaver somniferum HOM05D004718 ORTHO05D005838 1.6e-13 79.7 99 45.5
MELO3C011203.2 Cucumis melo HOM05D004718 ORTHO05D005838 2.7e-13 79.0 109 41.3
HPP92_023163 Vanilla planifolia HOM05D004718 ORTHO05D005838 2.7e-13 79.0 101 42.6
C08p24600 Brassica napus HOM05D004718 ORTHO05D005838 4.5e-13 78.2 106 42.5
BolC8t50076H Brassica oleracea HOM05D004718 ORTHO05D005838 4.5e-13 78.2 106 42.5
VMungo0647G1764 Vigna mungo HOM05D004718 ORTHO05D005838 4.5e-13 78.2 148 33.1
MSTRG.2684 Avicennia marina HOM05D004718 ORTHO05D005838 5.9e-13 77.8 106 37.7
Migut.H01115 Erythranthe guttata HOM05D004718 ORTHO05D005838 5.9e-13 77.8 100 41.0
SEGI_25158 Sequoiadendron giganteum HOM05D004718 ORTHO05D046641 5.9e-13 77.8 101 41.6
AL5G29440 Arabidopsis lyrata HOM05D004718 ORTHO05D005838 7.7e-13 77.4 102 40.2
A06p18130 Brassica napus HOM05D004718 ORTHO05D005838 7.7e-13 77.4 102 39.2
BraA06t24901Z Brassica rapa HOM05D004718 ORTHO05D005838 7.7e-13 77.4 102 39.2
Peaxi162Scf00583g00537 Petunia axillaris HOM05D004718 ORTHO05D005838 1.0e-12 77.0 107 39.3
THA.LOC104799000 Tarenaya hassleriana HOM05D004718 ORTHO05D005838 1.0e-12 77.0 99 42.4
A06p28290 Brassica napus HOM05D004718 ORTHO05D005838 1.3e-12 76.6 100 42.0
BraA06t25772Z Brassica rapa HOM05D004718 ORTHO05D005838 1.3e-12 76.6 100 42.0
BcaC07g39424 Brassica carinata HOM05D004718 ORTHO05D005838 2.2e-12 75.9 106 41.5
Carub.0005s1593 Capsella rubella HOM05D004718 ORTHO05D005838 2.2e-12 75.9 102 41.2
BcaB01g00691 Brassica carinata HOM05D004718 ORTHO05D005838 2.9e-12 75.5 106 41.5
Nitab4.5_0000004g0240 Nicotiana tabacum HOM05D004718 ORTHO05D005838 2.9e-12 75.5 107 41.1
SGA_v2.0_scaffold76G25169 Striga asiatica HOM05D004718 ORTHO05D005838 2.9e-12 75.5 100 40.0
DCAR_000697 Daucus carota HOM05D004718 ORTHO05D005838 3.8e-12 75.1 127 35.4
Solyc03g078390.3 Solanum lycopersicum HOM05D004718 ORTHO05D005838 3.8e-12 75.1 104 38.5
Sopen03g021200 Solanum pennellii HOM05D004718 ORTHO05D005838 3.8e-12 75.1 104 38.5
Zm00001eb310400 Zea mays HOM05D004718 ORTHO05D005838 6.5e-12 74.3 107 41.1
Zm00001eb008340 Zea mays HOM05D004718 ORTHO05D005838 1.5e-11 73.2 108 39.8
PGSC0003DMG402018450 Solanum tuberosum HOM05D004718 ORTHO05D005838 1.9e-11 72.8 101 39.6
BcaB02g09597 Brassica carinata HOM05D004718 ORTHO05D005838 2.5e-11 72.4 85 43.5
CDE06G1884 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 4.2e-11 71.6 102 38.2
Sed0007031 Sechium edule HOM05D004718 ORTHO05D005838 1.2e-10 70.1 99 43.4
CDE04G3074 Ceratophyllum demersum HOM05D004718 ORTHO05D005838 2.7e-10 68.9 102 35.3
Sed0011780 Sechium edule HOM05D004718 ORTHO05D005838 1.8e-09 66.2 100 39.0
Actinidia25724 Actinidia chinensis HOM05D004718 ORTHO05D005838 4.1e-06 55.1 90 37.8
unitig_699.g19716 Utricularia gibba HOM05D004718 ORTHO05D005838 9.1e-06 53.9 42 57.1


User provided reference genes

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