Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G1049 Fragaria x ananassa HOM05D001965 ORTHO05D002112 1.1e-144 516.5 250 100.0
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.8e-55 219.5 256 52.7
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 3.7e-55 219.2 252 54.4
RcHm_v2.0_Chr3g0455181 Rosa chinensis HOM05D001965 ORTHO05D002112 6.9e-54 214.9 303 47.5
FvH4_6g06170 Fragaria vesca HOM05D001965 ORTHO05D002112 9.0e-54 214.5 257 52.1
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 9.0e-54 214.5 257 52.1
FAN09G1699 Fragaria x ananassa HOM05D001965 ORTHO05D002112 2.9e-52 209.5 257 51.8
Prupe.6G323800 Prunus persica HOM05D001965 ORTHO05D002112 2.2e-39 166.8 262 43.9
MD12G1217500 Malus domestica HOM05D001965 ORTHO05D002112 1.7e-36 157.1 262 41.6
MD04G1203700 Malus domestica HOM05D001965 ORTHO05D002112 2.1e-34 150.2 261 40.6
Cfa006601 Carpinus fangiana HOM05D001965 ORTHO05D002112 7.0e-30 135.2 260 41.9
Haze_04176 Corylus avellana HOM05D001965 ORTHO05D002112 2.2e-28 130.2 258 42.2
QL03p007709 Quercus lobata HOM05D001965 ORTHO05D002112 5.5e-27 125.6 265 37.7
QL03p007389 Quercus lobata HOM05D001965 ORTHO05D002112 1.0e-25 121.3 265 37.4
CANSAT54G2574 Cannabis sativa HOM05D001965 ORTHO05D002112 4.4e-24 115.9 233 40.3
Lalb_Chr06g0167641 Lupinus albus HOM05D001965 ORTHO05D002112 4.4e-24 115.9 276 38.0
Lalb_Chr15g0077241 Lupinus albus HOM05D001965 ORTHO05D002112 9.7e-24 114.8 306 33.3
CiPaw.07G018900 Carya illinoinensis HOM05D001965 ORTHO05D002112 1.8e-22 110.5 261 36.8
arahy.Tifrunner.gnm1.ann1.FE8GQY Arachis hypogaea HOM05D001965 ORTHO05D002112 7.0e-22 108.6 253 37.9
arahy.Tifrunner.gnm1.ann1.01A8MA Arachis hypogaea HOM05D001965 ORTHO05D002112 1.2e-21 107.8 253 36.8
Glyma.20G234500 Glycine max HOM05D001965 ORTHO05D002112 1.0e-20 104.8 269 35.3
Ciclev10000065m.g Citrus clementina HOM05D001965 ORTHO05D002112 1.3e-20 104.4 270 33.3
VMungo0720G2192 Vigna mungo HOM05D001965 ORTHO05D002112 1.3e-20 104.4 262 35.9
Atru.chr2.365 Acer truncatum HOM05D001965 ORTHO05D002112 1.7e-20 104.0 269 34.6
Medtr1g083040 Medicago truncatula HOM05D001965 ORTHO05D002112 2.2e-20 103.6 238 34.9
Glyma.10G153800 Glycine max HOM05D001965 ORTHO05D002112 6.5e-20 102.1 269 35.7
Psat0s2745g0040 Pisum sativum HOM05D001965 ORTHO05D002112 8.5e-20 101.7 261 35.6
TPR.G6092 Trifolium pratense HOM05D001965 ORTHO05D002112 8.5e-20 101.7 263 32.7
Ca_10116_v3 Cicer arietinum L. HOM05D001965 ORTHO05D002112 1.9e-19 100.5 263 33.5
Lj1g0025505 Lotus japonicus HOM05D001965 ORTHO05D002112 4.2e-19 99.4 251 35.9
Dinv30775 Davidia involucrata HOM05D001965 ORTHO05D002112 2.1e-18 97.1 267 35.2
Lj5g0019884 Lotus japonicus HOM05D001965 ORTHO05D002112 1.0e-17 94.7 245 34.7
Manes.09G168000 Manihot esculenta HOM05D001965 ORTHO05D002112 1.0e-17 94.7 264 34.8
Dinv40302 Davidia involucrata HOM05D001965 ORTHO05D002112 1.4e-17 94.4 277 32.5
TAR365G0296 Trochodendron aralioides HOM05D001965 ORTHO05D002112 1.8e-17 94.0 270 33.0
GSVIVG01017770001 Vitis vinifera HOM05D001965 ORTHO05D002112 2.3e-17 93.6 222 36.5
Phvul.007G179500 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 3.0e-17 93.2 263 34.2
HanXRQChr11g0339601 Helianthus annuus HOM05D001965 ORTHO05D002112 6.8e-17 92.0 230 33.9
Nn4g25956 Nelumbo nucifera HOM05D001965 ORTHO05D002112 2.0e-16 90.5 275 33.8
Lju1819A2T53 Lonicera japonica HOM05D001965 ORTHO05D002112 3.4e-16 89.7 262 34.7
Sc15g0003700 Simmondsia chinensis HOM05D001965 ORTHO05D002112 7.5e-16 88.6 176 33.0
Eucgr.C02776 Eucalyptus grandis HOM05D001965 ORTHO05D002112 2.2e-15 87.0 261 33.7
Potri.005G029000 Populus trichocarpa HOM05D001965 ORTHO05D002112 8.3e-15 85.1 228 34.2
Ah.04g153900 Amaranthus hybridus HOM05D001965 ORTHO05D002112 3.1e-14 83.2 174 36.2
Aqoxy2G03054 Aquilegia oxysepala HOM05D001965 ORTHO05D002112 4.1e-14 82.8 259 32.0
CSS0042119 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 4.1e-14 82.8 264 31.8
Hund20572 Selenicereus undatus HOM05D001965 ORTHO05D002112 5.4e-14 82.4 177 36.7
Thecc.05G310000 Theobroma cacao HOM05D001965 ORTHO05D002112 5.4e-14 82.4 269 32.0
Dinv38307 Davidia involucrata HOM05D001965 ORTHO05D002112 7.0e-14 82.0 271 30.3
ECA236G2062 Erigeron canadensis HOM05D001965 ORTHO05D002112 7.0e-14 82.0 242 32.2
ATR0307G048 Amborella trichopoda HOM05D001965 ORTHO05D002112 9.1e-14 81.6 224 33.9
Potri.013G020500 Populus trichocarpa HOM05D001965 ORTHO05D002112 9.1e-14 81.6 266 31.6
CSS0013812 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 2.0e-13 80.5 265 33.6
Dinv44401 Davidia involucrata HOM05D001965 ORTHO05D002112 2.0e-13 80.5 270 31.9
PGR031G3250 Punica granatum HOM05D001965 ORTHO05D002112 2.7e-13 80.1 267 31.5
EL10Ac3g06584 Beta vulgaris HOM05D001965 ORTHO05D002112 3.5e-13 79.7 217 31.3
Lsat_1_v5_gn_9_86960 Lactuca sativa HOM05D001965 ORTHO05D002112 5.9e-13 79.0 236 31.8
Peaxi162Scf00386g00415 Petunia axillaris HOM05D001965 ORTHO05D002112 5.9e-13 79.0 277 30.3
Thecc.04G280900 Theobroma cacao HOM05D001965 ORTHO05D002112 1.3e-12 77.8 288 27.4
MBI19_g04331_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 1.7e-12 77.4 273 30.4
CSS0007405 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 2.9e-12 76.6 224 30.8
PGR004G1216 Punica granatum HOM05D001965 ORTHO05D002112 2.9e-12 76.6 253 32.0
SalBow2G2421 Salvia bowleyana HOM05D001965 ORTHO05D002112 2.9e-12 76.6 244 33.6
ECA233G3126 Erigeron canadensis HOM05D001965 ORTHO05D002112 3.8e-12 76.3 197 29.9
MBI13_g04191_MAGBIO Magnolia biondii HOM05D001965 ORTHO05D002112 3.8e-12 76.3 298 28.9
Nitab4.5_0003147g0060 Nicotiana tabacum HOM05D001965 ORTHO05D002112 3.8e-12 76.3 272 30.5
CAN.G706.19 Capsicum annuum HOM05D001965 ORTHO05D002112 1.1e-11 74.7 256 30.9
AUR62043447 Chenopodium quinoa HOM05D001965 ORTHO05D002112 1.1e-11 74.7 215 31.6
CiPaw.01G150700 Carya illinoinensis HOM05D001965 ORTHO05D002112 1.5e-11 74.3 170 37.1
Gohir.A11G295300 Gossypium hirsutum HOM05D001965 ORTHO05D002112 1.9e-11 73.9 259 27.8
Oeu029259.3 Olea europaea HOM05D001965 ORTHO05D002112 1.9e-11 73.9 264 31.8
SalBow5G3642 Salvia bowleyana HOM05D001965 ORTHO05D002112 1.9e-11 73.9 264 31.8
CAN.G580.4 Capsicum annuum HOM05D001965 ORTHO05D002112 2.5e-11 73.6 204 34.8
Manes.15G014400 Manihot esculenta HOM05D001965 ORTHO05D002112 2.5e-11 73.6 164 34.1
CSS0031262 Camellia sinensis var. sinensis HOM05D001965 ORTHO05D002112 3.2e-11 73.2 224 30.8
Sabra13G0023000 Salix brachista HOM05D001965 ORTHO05D002112 3.2e-11 73.2 268 31.0
Lj6A672G23 Lonicera japonica HOM05D001965 ORTHO05D002112 4.2e-11 72.8 256 30.9
Migut.G00183 Erythranthe guttata HOM05D001965 ORTHO05D002112 7.2e-11 72.0 142 41.5
MSTRG.3934 Avicennia marina HOM05D001965 ORTHO05D002112 1.2e-10 71.2 238 32.4
Ciclev10004186m.g Citrus clementina HOM05D001965 ORTHO05D002112 1.2e-10 71.2 297 28.6
Duzib106G0035 Durio zibethinus HOM05D001965 ORTHO05D002112 1.2e-10 71.2 267 30.0
Gorai.007G342200 Gossypium raimondii HOM05D001965 ORTHO05D002112 1.2e-10 71.2 259 27.8
TWI53G1978 Tripterygium wilfordii HOM05D001965 ORTHO05D002112 1.2e-10 71.2 290 28.3
Actinidia00042 Actinidia chinensis HOM05D001965 ORTHO05D002112 1.6e-10 70.9 222 32.4
Gohir.D11G311600 Gossypium hirsutum HOM05D001965 ORTHO05D002112 2.1e-10 70.5 259 27.4
Potri.008G216600 Populus trichocarpa HOM05D001965 ORTHO05D002112 2.1e-10 70.5 228 31.6
Cpa.g.sc48.70 Carica papaya HOM05D001965 ORTHO05D002112 2.8e-10 70.1 259 25.9
Potri.010G023201 Populus trichocarpa HOM05D001965 ORTHO05D002112 2.8e-10 70.1 261 31.8
Migut.N00106 Erythranthe guttata HOM05D001965 ORTHO05D002112 3.6e-10 69.7 135 40.0
Nitab4.5_0000784g0110 Nicotiana tabacum HOM05D001965 ORTHO05D002112 3.6e-10 69.7 203 33.0
Gohir.D02G053000 Gossypium hirsutum HOM05D001965 ORTHO05D002112 4.7e-10 69.3 288 28.5
Sabra05G0033800 Salix brachista HOM05D001965 ORTHO05D002112 4.7e-10 69.3 230 32.2
CARHR079720 Cardamine hirsuta HOM05D001965 ORTHO05D002112 6.1e-10 68.9 125 35.2
Thhalv10019971m.g Eutrema salsugineum HOM05D001965 ORTHO05D002112 6.1e-10 68.9 127 36.2
Duzib052G0562 Durio zibethinus HOM05D001965 ORTHO05D002112 8.0e-10 68.6 282 28.0
Sabra08G0154900 Salix brachista HOM05D001965 ORTHO05D002112 8.0e-10 68.6 227 31.3
Glyma.03G237000 Glycine max HOM05D001965 ORTHO05D002112 1.0e-09 68.2 126 38.1
Solyc01g067560.3 Solanum lycopersicum HOM05D001965 ORTHO05D002112 1.0e-09 68.2 179 33.5
Solyc12g098160.2 Solanum lycopersicum HOM05D001965 ORTHO05D002112 1.0e-09 68.2 271 28.0
Sopen01g029510 Solanum pennellii HOM05D001965 ORTHO05D002112 1.0e-09 68.2 179 33.5
GSVIVG01000089001 Vitis vinifera HOM05D001965 ORTHO05D002112 1.0e-09 68.2 260 31.5
Actinidia23652 Actinidia chinensis HOM05D001965 ORTHO05D002112 1.4e-09 67.8 255 30.2
Sabra10G0015400 Salix brachista HOM05D001965 ORTHO05D002112 1.8e-09 67.4 255 30.6
Carub.0003s0466 Capsella rubella HOM05D001965 ORTHO05D002112 2.3e-09 67.0 129 36.4
Duzib212G0636 Durio zibethinus HOM05D001965 ORTHO05D002112 2.3e-09 67.0 281 28.8
Gohir.A02G047900 Gossypium hirsutum HOM05D001965 ORTHO05D002112 2.3e-09 67.0 278 29.1
Actinidia40249 Actinidia chinensis HOM05D001965 ORTHO05D002112 3.0e-09 66.6 267 29.2
Cpa.g.sc16.151 Carica papaya HOM05D001965 ORTHO05D002112 3.0e-09 66.6 172 33.1
Gorai.005G058900 Gossypium raimondii HOM05D001965 ORTHO05D002112 3.0e-09 66.6 151 37.1
BcaC05g30132 Brassica carinata HOM05D001965 ORTHO05D002112 5.2e-09 65.9 212 28.3
Sp3g04240 Schrenkiella parvula HOM05D001965 ORTHO05D002112 5.2e-09 65.9 245 26.9
Sopen12g032990 Solanum pennellii HOM05D001965 ORTHO05D002112 5.2e-09 65.9 121 39.7
BcaC05g30151 Brassica carinata HOM05D001965 ORTHO05D002112 6.8e-09 65.5 238 27.3
MELO3C006642.2 Cucumis melo HOM05D001965 ORTHO05D002112 6.8e-09 65.5 134 38.8
SGA_v2.0_scaffold86G26906 Striga asiatica HOM05D001965 ORTHO05D002112 6.8e-09 65.5 217 30.0
CsaV3_3G014420 Cucumis sativus L. HOM05D001965 ORTHO05D002112 8.8e-09 65.1 134 38.8
Peaxi162Scf00205g00120 Petunia axillaris HOM05D001965 ORTHO05D002112 1.5e-08 64.3 140 37.9
QL06p008270 Quercus lobata HOM05D001965 ORTHO05D002112 1.5e-08 64.3 176 32.4
THA.LOC104818705 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 1.5e-08 64.3 255 27.8
MSTRG.21805 Avicennia marina HOM05D001965 ORTHO05D002112 2.0e-08 63.9 153 35.3
Cc01_g01650 Coffea canephora HOM05D001965 ORTHO05D002112 2.0e-08 63.9 199 28.6
ClCG05G005970 Citrullus lanatus HOM05D001965 ORTHO05D002112 2.6e-08 63.5 134 38.1
AT3G05380 Arabidopsis thaliana HOM05D001965 ORTHO05D002112 3.4e-08 63.2 129 35.7
Oeu002611.1 Olea europaea HOM05D001965 ORTHO05D002112 3.4e-08 63.2 132 35.6
Actinidia05684 Actinidia chinensis HOM05D001965 ORTHO05D002112 4.4e-08 62.8 259 30.5
BcaNung04542 Brassica carinata HOM05D001965 ORTHO05D002112 4.4e-08 62.8 118 30.5
Psat3g011560 Pisum sativum HOM05D001965 ORTHO05D002112 5.7e-08 62.4 190 31.1
A05p42260 Brassica napus HOM05D001965 ORTHO05D002112 7.5e-08 62.0 236 28.4
COL.COLO4_13902 Corchorus olitorius HOM05D001965 ORTHO05D002112 7.5e-08 62.0 134 35.1
Prupe.1G139300 Prunus persica HOM05D001965 ORTHO05D002112 7.5e-08 62.0 172 30.2
SalBow2G2791 Salvia bowleyana HOM05D001965 ORTHO05D002112 7.5e-08 62.0 221 30.3
SGA_v2.0_scaffold175G39296 Striga asiatica HOM05D001965 ORTHO05D002112 7.5e-08 62.0 132 34.8
Atru.chr4.2797 Acer truncatum HOM05D001965 ORTHO05D002112 9.8e-08 61.6 256 27.0
Glyma.17G024600 Glycine max HOM05D001965 ORTHO05D002112 9.8e-08 61.6 254 28.0
Haze_01239 Corylus avellana HOM05D001965 ORTHO05D002112 1.3e-07 61.2 175 34.9
THA.LOC104821714 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 1.7e-07 60.8 226 28.8
C05p61840 Brassica napus HOM05D001965 ORTHO05D002112 2.8e-07 60.1 91 39.6
BolC5t34844H Brassica oleracea HOM05D001965 ORTHO05D002112 2.8e-07 60.1 91 39.6
Gorai.013G124600 Gossypium raimondii HOM05D001965 ORTHO05D002112 2.8e-07 60.1 211 28.9
BraA05t23027Z Brassica rapa HOM05D001965 ORTHO05D002112 3.7e-07 59.7 236 28.0
Nn3g21366 Nelumbo nucifera HOM05D001965 ORTHO05D002112 3.7e-07 59.7 210 28.6
Phvul.003G103001 Phaseolus vulgaris HOM05D001965 ORTHO05D002112 3.7e-07 59.7 216 30.6
THA.LOC104821767 Tarenaya hassleriana HOM05D001965 ORTHO05D002112 3.7e-07 59.7 166 30.7
Gohir.A13G108100 Gossypium hirsutum HOM05D001965 ORTHO05D002112 4.9e-07 59.3 146 33.6
HanXRQChr04g0117041 Helianthus annuus HOM05D001965 ORTHO05D002112 4.9e-07 59.3 245 28.2
MD16G1172600 Malus domestica HOM05D001965 ORTHO05D002112 4.9e-07 59.3 224 29.9
Rhsim07G0186200 Rhododendron simsii HOM05D001965 ORTHO05D002112 4.9e-07 59.3 136 38.2
Sed0023895 Sechium edule HOM05D001965 ORTHO05D002112 4.9e-07 59.3 134 36.6
Lalb_Chr07g0177631 Lupinus albus HOM05D001965 ORTHO05D002112 6.3e-07 58.9 168 31.5
VMungo1215G2815 Vigna mungo HOM05D001965 ORTHO05D002112 8.3e-07 58.5 135 37.0
SGA_v2.0_scaffold55G19697 Striga asiatica HOM05D001965 ORTHO05D002112 1.4e-06 57.8 132 34.8


User provided reference genes

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