Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 2.1e-155 552.4 294 100.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 7.2e-151 537.3 294 97.3
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 1.4e-143 513.1 278 97.8
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 3.8e-136 488.4 294 83.0
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 5.5e-111 404.8 276 74.3
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 2.7e-105 386.0 295 68.8
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 5.0e-104 381.7 281 69.8
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 2.9e-99 365.9 277 67.1
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 4.9e-99 365.2 277 66.4
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 2.0e-92 343.2 281 60.9
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 2.9e-91 339.3 281 60.9
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 6.4e-91 338.2 294 60.5
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 1.2e-89 334.0 277 61.7
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 2.7e-89 332.8 294 59.9
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 6.0e-89 331.6 294 57.8
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 3.3e-87 325.9 283 59.7
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 4.3e-87 325.5 294 58.5
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 7.3e-87 324.7 294 58.2
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 9.5e-87 324.3 294 58.5
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.6e-86 323.6 280 57.9
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 8.1e-86 321.2 255 63.5
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 1.1e-85 320.9 281 57.3
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.8e-85 320.1 278 57.9
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 4.4e-84 315.5 295 56.3
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 4.1e-82 308.9 275 57.5
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 2.1e-81 306.6 283 58.7
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 2.7e-81 306.2 263 59.7
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.7e-81 306.2 284 56.0
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 1.3e-80 303.9 294 51.7
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 3.0e-80 302.8 296 57.4
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 1.1e-79 300.8 296 57.1
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 3.3e-79 299.3 284 53.2
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 9.5e-79 297.7 278 55.0
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 9.5e-79 297.7 296 55.7
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.6e-78 297.0 294 54.4
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 8.1e-78 294.7 278 55.4
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 2.3e-77 293.1 294 53.7
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 4.0e-77 292.4 281 51.6
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 4.0e-77 292.4 294 54.1
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 1.2e-76 290.8 294 52.4
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.2e-76 290.8 151 96.7
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.2e-76 290.8 151 96.7
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 1.5e-76 290.4 282 50.7
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 1.5e-76 290.4 297 52.9
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 5.8e-76 288.5 278 56.1
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.3e-75 287.3 282 57.4
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 1.0e-72 277.7 295 48.5
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 1.3e-72 277.3 281 51.6
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.7e-72 276.9 226 62.4
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 1.2e-70 270.8 281 50.9
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 2.1e-70 270.0 293 52.2
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.2e-68 264.2 276 51.4
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 2.0e-68 263.5 293 50.2
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 2.0e-68 263.5 293 50.9
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 2.4e-66 256.5 266 51.1
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 7.1e-66 255.0 230 56.5
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 2.5e-63 246.5 294 52.0
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 1.1e-61 241.1 269 50.2
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.2e-60 237.7 225 53.8
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 1.3e-54 217.6 405 36.5
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 5.5e-50 202.2 217 49.3
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 6.7e-48 195.3 184 53.3
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.0e-45 186.0 108 99.1
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 4.0e-45 186.0 108 99.1
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 1.9e-42 177.2 150 61.3
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 2.5e-42 176.8 148 60.8
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 3.6e-33 146.4 159 50.9
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 4.6e-33 146.0 150 50.0
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 3.9e-32 142.9 156 51.3
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 4.8e-30 136.0 169 42.6
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.9e-27 126.7 270 31.9
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 1.6e-25 120.9 107 54.2
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 1.8e-21 107.5 275 29.8
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 1.5e-20 104.4 94 52.1
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 4.5e-20 102.8 267 31.1
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 5.0e-19 99.4 264 28.8
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 4.2e-18 96.3 276 27.2
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 4.2e-18 96.3 278 27.7
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 5.5e-18 95.9 275 29.5
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 5.5e-18 95.9 272 29.8
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 7.2e-18 95.5 278 30.9
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 9.4e-18 95.1 268 30.2
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 1.2e-17 94.7 275 28.7
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.2e-17 94.7 272 29.8
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 1.6e-17 94.4 243 33.3
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.6e-17 94.4 276 27.9
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 1.6e-17 94.4 268 28.4
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.1e-17 94.0 269 28.3
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 2.1e-17 94.0 275 26.9
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 3.6e-17 93.2 266 31.2
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 6.1e-17 92.4 288 27.4
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 6.1e-17 92.4 275 27.6
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 7.9e-17 92.0 270 28.9
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 7.9e-17 92.0 252 29.8
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.0e-16 91.7 271 28.0
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 1.4e-16 91.3 275 25.8
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 1.4e-16 91.3 273 28.2
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 1.8e-16 90.9 273 28.2
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 3.9e-16 89.7 283 28.6
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 8.8e-16 88.6 275 28.4
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 4.4e-15 86.3 272 26.5
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 5.7e-15 85.9 111 46.8
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 7.4e-15 85.5 258 27.9
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 7.4e-15 85.5 268 27.2
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 9.7e-15 85.1 269 32.0
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 1.3e-14 84.7 279 26.2
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 1.7e-14 84.3 269 25.7
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 2.2e-14 84.0 274 25.2
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 2.2e-14 84.0 267 25.8
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 2.2e-14 84.0 313 26.2
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 2.8e-14 83.6 267 25.8
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 2.8e-14 83.6 267 25.8
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 2.8e-14 83.6 260 26.2
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 3.7e-14 83.2 268 28.0
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 4.8e-14 82.8 254 28.7
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 4.8e-14 82.8 274 25.2
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 4.8e-14 82.8 270 25.9
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 6.3e-14 82.4 269 25.3
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 6.3e-14 82.4 277 25.6
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 6.3e-14 82.4 275 29.1
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 8.2e-14 82.0 274 25.9
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 8.2e-14 82.0 270 25.9
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.1e-13 81.6 270 28.5
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.1e-13 81.6 281 27.8
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.4e-13 81.3 275 27.3
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 1.4e-13 81.3 281 26.0
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.4e-13 81.3 265 26.4
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 1.4e-13 81.3 273 27.5
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.4e-13 80.5 251 27.5
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 2.4e-13 80.5 281 24.9
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 2.4e-13 80.5 278 26.6
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 3.1e-13 80.1 311 25.4
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 3.1e-13 80.1 284 24.3
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 3.1e-13 80.1 266 28.2
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 3.1e-13 80.1 269 25.3
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 5.3e-13 79.3 275 25.8
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 5.3e-13 79.3 273 24.9
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 5.3e-13 79.3 264 25.8
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 5.3e-13 79.3 282 24.1
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 7.0e-13 79.0 279 25.4
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 7.0e-13 79.0 274 27.7
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 9.1e-13 78.6 281 27.0
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 9.1e-13 78.6 235 27.2
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 1.2e-12 78.2 274 27.0
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 1.2e-12 78.2 104 41.3
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 1.6e-12 77.8 189 28.6
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.6e-12 77.8 284 25.7
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 2.0e-12 77.4 189 28.6
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 2.0e-12 77.4 275 24.7
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 2.0e-12 77.4 283 24.4
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 2.6e-12 77.0 259 28.6
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 3.5e-12 76.6 247 27.5
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 3.5e-12 76.6 271 25.1
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 3.5e-12 76.6 263 27.4
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 7.7e-12 75.5 280 25.0
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.3e-11 74.7 189 27.5
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 1.3e-11 74.7 296 25.3
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 5.0e-11 72.8 277 26.4
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 5.0e-11 72.8 103 38.8
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 6.5e-11 72.4 281 23.5
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 6.5e-11 72.4 281 25.6
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 1.1e-10 71.6 272 24.6
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.5e-10 71.2 243 30.5
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 1.9e-10 70.9 271 28.4
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 2.5e-10 70.5 270 26.3
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 3.2e-10 70.1 279 25.4
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 4.2e-10 69.7 262 31.3
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 5.5e-10 69.3 269 23.8
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 7.2e-10 68.9 143 30.1
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 7.2e-10 68.9 216 25.9
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 9.4e-10 68.6 271 27.3
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 1.6e-09 67.8 261 24.9
HPP92_006441 Vanilla planifolia HOM05D007245 ORTHO05D009049 2.7e-09 67.0 163 30.7
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 3.6e-09 66.6 265 26.4
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 4.0e-08 63.2 171 28.1
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 6.7e-08 62.4 255 27.1
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.7e-06 57.8 130 30.8
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 2.2e-06 57.4 102 33.3


User provided reference genes

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