Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3212 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.3e-151 538.9 276 100.0
FAN17G2621 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.9e-81 306.6 370 53.2
FAN12G2472 Fragaria x ananassa HOM05D004148 ORTHO05D004709 2.5e-81 306.2 370 53.0
FvH4_4g33990 Fragaria vesca HOM05D004148 ORTHO05D004709 1.2e-78 297.4 370 51.9
FAN22G0787 Fragaria x ananassa HOM05D004148 ORTHO05D004709 1.7e-77 293.5 370 51.6
FvH4_3g27031 Fragaria vesca HOM05D004148 ORTHO05D004709 3.2e-76 289.3 232 69.0
RcHm_v2.0_Chr5g0049541 Rosa chinensis HOM05D004148 ORTHO05D004709 3.5e-75 285.8 391 48.8
Prupe.6G151400 Prunus persica HOM05D004148 ORTHO05D004709 1.8e-58 230.3 379 42.0
MD11G1178600 Malus domestica HOM05D004148 ORTHO05D004709 7.4e-57 224.9 379 42.0
MD03G1162400 Malus domestica HOM05D004148 ORTHO05D004709 1.0e-53 214.5 379 41.2
Ciclev10027694m.g Citrus clementina HOM05D004148 ORTHO05D004709 6.7e-50 201.8 381 38.3
Cfa010235 Carpinus fangiana HOM05D004148 ORTHO05D004709 4.3e-49 199.1 400 37.0
QL01p018674 Quercus lobata HOM05D004148 ORTHO05D004709 7.4e-49 198.4 390 37.7
Haze_23628 Corylus avellana HOM05D004148 ORTHO05D004709 3.1e-47 193.0 400 36.0
GSVIVG01022379001 Vitis vinifera HOM05D004148 ORTHO05D004709 9.0e-47 191.4 390 37.2
Gohir.A05G076400 Gossypium hirsutum HOM05D004148 ORTHO05D004709 1.2e-43 181.0 404 35.9
Atru.chr3.3014 Acer truncatum HOM05D004148 ORTHO05D004709 3.6e-43 179.5 392 35.5
Gohir.D05G079200 Gossypium hirsutum HOM05D004148 ORTHO05D004709 3.6e-43 179.5 404 34.9
CANSAT54G2785 Cannabis sativa HOM05D004148 ORTHO05D004709 7.9e-43 178.3 416 33.9
Gorai.009G080700 Gossypium raimondii HOM05D004148 ORTHO05D004709 1.0e-42 177.9 404 34.7
Lj2A891G11 Lonicera japonica HOM05D004148 ORTHO05D004709 3.9e-42 176.0 397 35.3
CSS0039756 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 6.7e-42 175.3 339 37.8
Dinv32838 Davidia involucrata HOM05D004148 ORTHO05D004709 2.0e-41 173.7 409 34.5
Glyma.01G244400 Glycine max HOM05D004148 ORTHO05D004709 2.0e-41 173.7 369 35.2
VMungo1215G0285 Vigna mungo HOM05D004148 ORTHO05D004709 4.3e-41 172.6 396 32.6
CSS0039701 Camellia sinensis var. sinensis HOM05D004148 ORTHO05D004709 9.7e-41 171.4 133 63.2
Hma1.2p1_0218F.1_g092390 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 1.7e-40 170.6 134 63.4
ClCG05G010880 Citrullus lanatus HOM05D004148 ORTHO05D004709 4.8e-40 169.1 402 33.8
Phvul.002G053700 Phaseolus vulgaris HOM05D004148 ORTHO05D004709 1.1e-39 167.9 393 32.1
Thecc.09G266000 Theobroma cacao HOM05D004148 ORTHO05D004709 1.1e-39 167.9 403 34.0
Sed0012220 Sechium edule HOM05D004148 ORTHO05D004709 1.4e-39 167.5 402 33.6
TWI60G0836 Tripterygium wilfordii HOM05D004148 ORTHO05D004709 6.9e-39 165.2 401 32.7
Cpa.g.sc103.97 Carica papaya HOM05D004148 ORTHO05D004709 1.5e-38 164.1 392 32.7
Lj1g0011831 Lotus japonicus HOM05D004148 ORTHO05D004709 2.0e-38 163.7 376 34.6
Psat4g228400 Pisum sativum HOM05D004148 ORTHO05D004709 7.7e-38 161.8 373 34.0
MELO3C020298.2 Cucumis melo HOM05D004148 ORTHO05D004709 1.0e-37 161.4 402 32.6
Lsat_1_v5_gn_5_75780 Lactuca sativa HOM05D004148 ORTHO05D004709 2.2e-37 160.2 369 34.7
Actinidia12896 Actinidia chinensis HOM05D001400 ORTHO05D001795 2.9e-37 159.8 400 33.2
Duzib168G1551 Durio zibethinus HOM05D004148 ORTHO05D004709 1.4e-36 157.5 135 60.0
Hma1.2p1_2711F.1_g327330 Hydrangea macrophylla HOM05D004148 ORTHO05D004709 1.4e-36 157.5 134 60.4
Potri.009G153300 Populus trichocarpa HOM05D004148 ORTHO05D004709 1.4e-36 157.5 377 33.2
Lalb_Chr16g0376251 Lupinus albus HOM05D004148 ORTHO05D004709 1.9e-36 157.1 364 33.0
Medtr5g004880 Medicago truncatula HOM05D004148 ORTHO05D004709 2.5e-36 156.8 368 33.2
CsaV3_3G017640 Cucumis sativus L. HOM05D004148 ORTHO05D004709 3.2e-36 156.4 402 32.1
arahy.Tifrunner.gnm1.ann1.SF9HJV Arachis hypogaea HOM05D004148 ORTHO05D004709 2.1e-35 153.7 382 31.4
Nn2g14486 Nelumbo nucifera HOM05D004148 ORTHO05D004709 2.7e-35 153.3 405 31.6
Ca_24340_v3 Cicer arietinum L. HOM05D004148 ORTHO05D004709 7.9e-35 151.8 134 60.4
TAR623G1397 Trochodendron aralioides HOM05D004148 ORTHO05D004709 7.9e-35 151.8 396 31.6
PGR102G2778 Punica granatum HOM05D004148 ORTHO05D004709 1.4e-34 151.0 398 31.4
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 3.3e-33 146.4 407 32.4
HanXRQChr03g0089821 Helianthus annuus HOM05D004148 ORTHO05D004709 5.7e-33 145.6 387 33.1
Rhsim13G0199700 Rhododendron simsii HOM05D004148 ORTHO05D004709 2.2e-32 143.7 399 31.3
Oeu048810.1 Olea europaea HOM05D004148 ORTHO05D004709 3.7e-32 142.9 388 29.9
PSO339G2294 Papaver somniferum HOM05D004148 ORTHO05D004709 6.3e-32 142.1 419 30.1
Manes.04G054800 Manihot esculenta HOM05D004148 ORTHO05D004709 1.8e-31 140.6 133 54.1
CARHR108980 Cardamine hirsuta HOM05D004148 ORTHO05D004709 9.1e-31 138.3 371 30.5
arahy.Tifrunner.gnm1.ann1.J94639 Arachis hypogaea HOM05D004148 ORTHO05D004709 3.5e-30 136.3 134 53.0
THA.LOC104815063 Tarenaya hassleriana HOM05D004148 ORTHO05D004709 7.7e-30 135.2 408 30.4
PSO384G5014 Papaver somniferum HOM05D004148 ORTHO05D004709 1.0e-29 134.8 413 29.3
BcaC01g02217 Brassica carinata HOM05D004148 ORTHO05D004709 1.1e-28 131.3 378 30.4
BcaB02g10777 Brassica carinata HOM05D004148 ORTHO05D004709 2.5e-28 130.2 381 30.2
Carub.0005s0948 Capsella rubella HOM05D004148 ORTHO05D004709 4.2e-28 129.4 385 29.9
EL10Ac7g16248 Beta vulgaris HOM05D004148 ORTHO05D004709 5.5e-28 129.0 418 28.9
BolSC21t60233H Brassica oleracea HOM05D004148 ORTHO05D004709 9.4e-28 128.3 378 29.9
AT3G43610 Arabidopsis thaliana HOM05D004148 ORTHO05D004709 1.6e-27 127.5 394 29.2
Thhalv10002374m.g Eutrema salsugineum HOM05D004148 ORTHO05D004709 2.1e-27 127.1 377 28.9
Eucgr.B03795 Eucalyptus grandis HOM05D004148 ORTHO05D004709 3.6e-27 126.3 400 28.2
Hund18819 Selenicereus undatus HOM05D004148 ORTHO05D004709 4.7e-27 125.9 402 28.9
Cc00_g06190 Coffea canephora HOM05D004148 ORTHO05D004709 6.1e-27 125.6 392 28.8
Sp5g17550 Schrenkiella parvula HOM05D004148 ORTHO05D004709 1.0e-26 124.8 394 29.9
Peaxi162Scf00217g00627 Petunia axillaris HOM05D004148 ORTHO05D004709 1.8e-26 124.0 385 29.4
Aqoxy1G00551 Aquilegia oxysepala HOM05D004148 ORTHO05D004709 6.7e-26 122.1 384 29.7
Nitab4.5_0000615g0090 Nicotiana tabacum HOM05D004148 ORTHO05D004709 8.8e-26 121.7 393 28.2
AL5G21540 Arabidopsis lyrata HOM05D004148 ORTHO05D004709 1.1e-25 121.3 389 29.6
AUR62020189 Chenopodium quinoa HOM05D004148 ORTHO05D004709 1.5e-25 120.9 422 28.4
Ah.15g099170 Amaranthus hybridus HOM05D004148 ORTHO05D004709 3.3e-25 119.8 412 27.9
Nitab4.5_0005222g0040 Nicotiana tabacum HOM05D004148 ORTHO05D004709 3.3e-25 119.8 394 28.4
Sc06g0008560 Simmondsia chinensis HOM05D004148 ORTHO05D004709 4.4e-25 119.4 400 28.5
Sopen11g029250 Solanum pennellii HOM05D004148 ORTHO05D004709 7.4e-25 118.6 381 28.9
MSTRG.21311 Avicennia marina HOM05D004148 ORTHO05D004709 2.8e-24 116.7 387 28.4
Psat6g175800 Pisum sativum HOM05D004148 ORTHO05D004709 2.8e-24 116.7 103 56.3
A06p19850 Brassica napus HOM05D004148 ORTHO05D004709 3.7e-24 116.3 385 28.6
Solyc11g071570.3 Solanum lycopersicum HOM05D004148 ORTHO05D004709 3.7e-24 116.3 381 28.9
BolC3t19498H Brassica oleracea HOM05D004148 ORTHO05D004709 4.8e-24 115.9 369 29.0
CAN.G439.18 Capsicum annuum HOM05D004148 ORTHO05D004709 1.1e-23 114.8 383 28.5
Aa31LG4G13420 Aethionema arabicum HOM05D004148 ORTHO05D004709 2.4e-23 113.6 408 27.5
A06p26680 Brassica napus HOM05D004148 ORTHO05D004709 3.1e-23 113.2 131 44.3
Migut.D00721 Erythranthe guttata HOM05D004148 ORTHO05D004709 3.1e-23 113.2 403 28.0
BraA06t25067Z Brassica rapa HOM05D004148 ORTHO05D004709 4.1e-23 112.8 369 29.3
BcaC01g01775 Brassica carinata HOM05D004148 ORTHO05D004709 1.2e-22 111.3 385 28.1
C03p72000 Brassica napus HOM05D004148 ORTHO05D004709 1.6e-22 110.9 385 28.1
SHI25295 Sapria himalayana HOM05D004148 ORTHO05D004709 3.5e-22 109.8 133 42.9
vmacro04062 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 6.5e-21 105.5 120 50.0
SGA_v2.0_scaffold29G12109 Striga asiatica HOM05D004148 ORTHO05D004709 8.5e-21 105.1 391 27.1
BcaB01g00875 Brassica carinata HOM05D004148 ORTHO05D004709 2.5e-20 103.6 131 43.5
SalBow6G3333 Salvia bowleyana HOM05D004148 ORTHO05D004709 2.3e-18 97.1 384 27.6
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.7e-18 95.5 81 61.7
Zm00001eb428880 Zea mays HOM05D004148 ORTHO05D004709 5.7e-17 92.4 277 30.7
ATR0697G020 Amborella trichopoda HOM05D004148 ORTHO05D004709 9.1e-15 85.1 149 38.3
Zm00001eb073760 Zea mays HOM05D004148 ORTHO05D004709 1.2e-14 84.7 396 26.3
HPP92_019532 Vanilla planifolia HOM05D004148 ORTHO05D004709 7.7e-14 82.0 161 36.6
CDE07G1769 Ceratophyllum demersum HOM05D004148 ORTHO05D004709 2.9e-13 80.1 185 34.1
DCAR_012264 Daucus carota HOM05D000495 ORTHO05D000357 2.5e-12 77.0 72 61.1
COL.COLO4_25330 Corchorus olitorius HOM05D004148 ORTHO05D004709 3.2e-12 76.6 135 42.2
Carub.0005s0934 Capsella rubella HOM05D004148 ORTHO05D004709 1.8e-10 70.9 126 42.9
SHI25296 Sapria himalayana HOM05D004148 ORTHO05D004709 3.0e-10 70.1 117 41.0
SEGI_18042 Sequoiadendron giganteum HOM05D004148 ORTHO05D004709 2.6e-09 67.0 151 32.5
MBI11_g07705_MAGBIO Magnolia biondii HOM05D004148 ORTHO05D004709 1.4e-07 61.2 145 35.2
unitig_21.g20312 Utricularia gibba HOM05D004148 ORTHO05D004709 2.4e-07 60.5 260 26.9
vmacro04063 Vaccinium macrocarpon HOM05D004148 ORTHO05D004709 9.1e-07 58.5 131 36.6
BraA06t25600Z Brassica rapa HOM05D004148 ORTHO05D004709 1.6e-06 57.8 66 45.5
Os04g0566900 Oryza sativa ssp. japonica HOM05D004148 ORTHO05D004709 5.9e-06 55.8 126 35.7


User provided reference genes

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