Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.0e-142 508.4 244 100.0
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.0e-134 483.4 236 98.3
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.9e-133 479.2 232 98.3
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.3e-133 478.0 236 96.6
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 2.0e-130 469.2 228 98.2
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.3e-118 429.1 224 90.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 2.6e-98 362.5 223 77.6
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 5.5e-96 354.8 223 76.2
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 3.5e-95 352.1 224 75.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 3.3e-93 345.5 226 75.7
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.4e-91 340.1 226 74.8
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 3.9e-86 322.0 231 69.7
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.3e-85 318.9 229 67.2
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 3.4e-82 308.9 228 65.8
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.2e-81 306.2 228 65.4
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 8.5e-81 304.3 228 64.9
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 1.1e-80 303.9 234 67.5
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 2.5e-80 302.8 228 67.5
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 2.5e-80 302.8 230 64.8
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.5e-80 302.8 228 64.0
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 4.2e-80 302.0 230 64.3
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 5.5e-80 301.6 228 66.7
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 7.2e-80 301.2 228 64.5
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.2e-79 300.4 228 66.2
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.2e-79 300.4 228 66.2
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 1.6e-79 300.1 228 64.5
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 4.6e-79 298.5 233 66.5
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 6.1e-79 298.1 229 65.5
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.0e-78 297.4 228 65.4
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 1.4e-78 297.0 228 67.5
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 8.8e-78 294.3 228 64.0
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 1.1e-77 293.9 228 66.2
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.1e-77 293.9 226 65.9
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.9e-77 293.1 228 63.6
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.5e-77 292.7 228 63.6
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 3.3e-77 292.4 227 62.6
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.3e-77 292.4 227 64.8
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 2.2e-76 289.7 228 64.5
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-76 289.7 230 63.9
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 2.8e-76 289.3 228 64.5
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.7e-76 288.9 226 66.8
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 4.8e-76 288.5 228 62.7
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 6.3e-76 288.1 228 65.4
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 1.1e-75 287.3 232 61.6
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.4e-75 286.2 230 60.9
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 3.1e-75 285.8 230 60.4
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 3.1e-75 285.8 233 63.5
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 6.9e-75 284.6 226 63.3
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 9.1e-75 284.3 226 62.8
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 2.6e-74 282.7 224 62.9
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 5.9e-74 281.6 220 63.2
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.0e-73 280.8 226 61.1
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.0e-73 280.8 226 63.3
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 2.2e-73 279.6 233 60.1
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 2.2e-73 279.6 224 62.1
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 3.8e-73 278.9 227 62.6
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 1.4e-72 276.9 226 61.9
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 3.2e-72 275.8 224 60.7
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.2e-72 275.8 226 62.8
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.7e-70 268.1 229 59.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.7e-70 268.1 229 59.8
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.6e-69 266.2 232 58.6
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.3e-69 265.8 237 57.4
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 9.7e-69 264.2 227 58.6
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.2e-68 263.1 227 59.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 2.8e-68 262.7 235 55.3
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.7e-68 262.3 227 58.6
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 7.0e-67 258.1 227 59.9
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 4.5e-66 255.4 207 60.9
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 4.5e-66 255.4 219 57.5
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 7.7e-66 254.6 233 56.7
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 3.8e-65 252.3 204 59.3
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 5.0e-65 251.9 231 57.6
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 8.5e-65 251.1 231 57.1
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.5e-64 249.6 231 57.1
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 3.2e-64 249.2 230 56.5
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.2e-64 248.8 194 63.4
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.2e-64 248.8 221 56.6
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 4.2e-64 248.8 239 54.8
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 9.4e-64 247.7 228 58.8
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.7e-63 246.1 228 57.9
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 3.6e-63 245.7 231 55.8
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 3.6e-63 245.7 228 54.4
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 4.7e-63 245.4 226 57.5
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 8.0e-63 244.6 229 56.3
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 8.0e-63 244.6 232 54.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 1.8e-62 243.4 229 56.8
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 8.8e-62 241.1 231 55.0
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.2e-60 236.5 233 53.6
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 2.8e-60 236.1 232 54.7
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 8.2e-60 234.6 228 55.3
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.1e-59 234.2 246 48.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 2.4e-59 233.0 219 55.7
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.1e-59 232.3 222 54.1
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 1.1e-56 224.2 226 53.5
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 1.9e-56 223.4 226 53.5
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 2.2e-52 209.9 224 51.3
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 4.1e-51 205.7 237 44.7
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 4.1e-51 205.7 217 50.7
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 7.0e-51 204.9 237 45.1
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.7e-49 200.3 227 47.6
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 6.1e-47 191.8 229 47.6
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 3.0e-46 189.5 223 44.8
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 4.0e-46 189.1 146 65.1
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 5.2e-46 188.7 228 44.7
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 3.4e-45 186.0 245 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 9.8e-45 184.5 229 42.8
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 1.7e-44 183.7 237 38.4
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 2.2e-44 183.3 245 43.3
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.3e-44 181.8 246 42.7
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 5.4e-43 178.7 240 43.3
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 7.0e-43 178.3 232 38.4
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.7e-42 176.4 225 46.7
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.7e-42 176.4 226 43.8
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.5e-42 175.6 225 43.6
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 3.8e-41 172.6 263 37.3
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 5.0e-41 172.2 150 56.0
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.5e-40 170.6 228 40.8
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 1.9e-40 170.2 237 38.8
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.4e-38 164.1 226 42.0
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.2e-37 161.0 225 39.1
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.2e-37 161.0 256 34.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 2.6e-37 159.8 177 48.0
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 2.6e-37 159.8 177 48.0
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 1.7e-36 157.1 233 39.9
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.1e-35 152.9 261 35.2
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 9.2e-35 151.4 205 39.0
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 3.5e-34 149.4 260 33.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 4.5e-34 149.1 146 50.0
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 7.8e-34 148.3 215 40.9
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.3e-33 147.5 228 43.0
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.3e-33 146.7 147 49.0
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.9e-33 146.4 228 42.5
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 2.9e-33 146.4 358 29.3
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.6e-33 145.2 260 34.2
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 1.9e-32 143.7 190 40.5
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 4.3e-32 142.5 253 36.0
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.5e-32 141.4 252 34.5
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.2e-31 141.0 311 30.2
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 2.8e-31 139.8 229 34.9
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 2.3e-30 136.7 180 42.2
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.1e-30 136.3 271 31.7
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.8e-30 135.2 269 31.2
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 8.9e-30 134.8 154 42.9
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 5.8e-29 132.1 153 46.4
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.7e-28 130.6 211 34.6
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 5.4e-27 125.6 224 35.7
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.0e-26 123.6 130 53.1
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 5.0e-25 119.0 114 51.8
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 5.0e-25 119.0 172 39.5
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 1.1e-24 117.9 151 39.1
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.5e-24 117.5 151 39.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.3e-22 110.2 108 50.9
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.3e-22 110.2 223 28.3
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 6.8e-22 108.6 143 42.0
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.1e-18 97.1 116 42.2
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.9e-17 92.8 213 31.0
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 8.6e-17 91.7 152 32.9
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.3e-16 89.4 78 55.1
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 6.8e-14 82.0 253 26.5
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 2.4e-11 73.6 155 32.9
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.4e-11 73.6 69 47.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 5.4e-11 72.4 94 35.1
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.3e-08 63.2 167 29.9


User provided reference genes

Program Settings