Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 5.4e-134 482.3 585 100.0
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.7e-132 477.2 585 99.3
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 3.4e-128 463.0 599 89.8
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 4.5e-128 462.6 585 95.7
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.7e-119 434.1 585 84.8
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 5.0e-103 379.4 587 73.3
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 2.5e-102 377.1 584 72.9
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 1.8e-97 360.9 585 74.7
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.4e-92 344.7 584 80.1
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 2.6e-91 340.5 584 74.0
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 2.6e-91 340.5 584 75.0
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 3.3e-91 340.1 584 82.5
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 3.1e-89 333.6 584 82.5
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 1.2e-88 331.6 584 77.4
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 2.6e-88 330.5 590 73.2
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 2.6e-88 330.5 584 82.9
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 1.0e-87 328.6 590 75.8
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.2e-87 327.4 582 75.3
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 2.9e-87 327.0 584 74.0
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 3.2e-86 323.6 584 78.8
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 5.5e-86 322.8 582 71.6
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 7.2e-86 322.4 584 73.1
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 6.1e-85 319.3 582 67.7
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 1.8e-84 317.8 584 78.1
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 8.8e-84 315.5 584 69.7
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 2.0e-83 314.3 585 76.9
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 5.7e-83 312.8 553 71.4
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 9.7e-83 312.0 584 73.3
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 9.7e-83 312.0 597 73.4
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 6.3e-82 309.3 584 74.0
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 4.1e-81 306.6 585 79.5
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 1.2e-80 305.1 584 66.8
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 1.6e-80 304.7 584 70.4
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 3.5e-80 303.5 584 73.6
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 4.5e-80 303.1 582 77.8
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 6.5e-79 299.3 584 73.1
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 1.1e-78 298.5 584 72.1
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 1.5e-78 298.1 564 77.3
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 2.5e-78 297.4 584 69.7
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 2.5e-78 297.4 584 69.3
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 5.5e-78 296.2 562 80.6
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 4.7e-77 293.1 584 74.5
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 5.2e-76 289.7 582 68.9
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 6.8e-76 289.3 585 77.8
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 8.8e-76 288.9 588 79.1
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.5e-75 288.1 585 66.8
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 5.7e-75 286.2 563 80.3
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.7e-74 284.6 583 80.6
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 4.8e-74 283.1 585 66.0
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 4.8e-74 283.1 585 68.7
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 8.3e-74 282.3 628 71.0
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 1.1e-73 282.0 409 81.4
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 7.0e-73 279.3 583 64.7
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 1.2e-72 278.5 582 68.4
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 3.5e-72 276.9 582 67.4
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.1e-70 271.9 586 65.0
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 2.5e-70 270.8 498 72.1
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 7.2e-70 269.2 585 78.5
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 7.2e-70 269.2 601 72.9
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 1.6e-69 268.1 582 63.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 2.7e-69 267.3 585 70.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 1.4e-68 265.0 582 65.8
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 1.8e-68 264.6 582 64.3
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 5.2e-68 263.1 582 64.8
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 9.8e-67 258.8 592 60.0
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 1.7e-66 258.1 584 63.7
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 2.2e-66 257.7 431 77.7
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 1.8e-65 254.6 590 63.1
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 9.1e-65 252.3 684 62.4
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.0e-64 251.1 580 55.5
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 2.0e-64 251.1 498 72.1
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.7e-63 248.1 582 64.3
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 1.7e-63 248.1 584 62.3
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 2.9e-63 247.3 589 48.0
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 5.0e-63 246.5 582 67.0
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 8.6e-63 245.7 563 71.4
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 1.5e-62 245.0 409 72.6
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 7.2e-62 242.7 315 60.6
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 6.1e-61 239.6 584 67.3
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.8e-60 238.0 588 63.8
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 4.0e-60 236.9 590 61.2
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 7.5e-59 232.6 432 75.5
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 2.8e-58 230.7 432 66.7
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 4.1e-57 226.9 584 63.0
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 5.4e-57 226.5 601 59.1
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 7.8e-56 222.6 564 61.5
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 4.0e-52 210.3 642 55.3
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 6.8e-52 209.5 563 61.3
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 3.7e-50 203.8 572 65.6
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 4.9e-50 203.4 593 60.2
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 1.1e-49 202.2 588 62.8
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.1e-49 202.2 497 64.8
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.0e-47 194.1 314 53.5
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.5e-46 191.8 563 66.4
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 3.6e-45 187.2 320 63.4
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 1.3e-42 178.7 590 52.2
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 1.3e-42 178.7 223 60.1
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 8.3e-42 176.0 587 65.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 3.0e-39 167.5 560 34.1
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 1.2e-37 162.2 545 67.2
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 1.1e-36 159.1 559 51.3
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 3.1e-36 157.5 519 62.0
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 6.4e-34 149.8 239 51.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 2.4e-33 147.9 95 84.2
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 1.2e-32 145.6 198 65.2
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-22 112.5 75 74.7
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 1.1e-22 112.5 75 74.7
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 1.9e-22 111.7 75 74.7
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 7.3e-22 109.8 75 73.3
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 9.6e-22 109.4 98 60.2
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 4.8e-21 107.1 75 66.7
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.2e-17 94.0 79 63.3
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 9.3e-17 92.8 52 86.5
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 1.2e-16 92.4 165 32.7
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 1.6e-16 92.0 60 71.7
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.0e-15 89.4 63 69.8
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.3e-15 89.0 100 75.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.1e-14 85.9 75 52.0
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 3.3e-14 84.3 104 81.7
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 3.3e-14 84.3 104 81.7
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 3.3e-14 84.3 104 81.7
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 5.3e-12 77.0 65 60.0
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 9.9e-11 72.8 44 79.5
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.9e-09 68.6 40 75.0
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 6.7e-07 60.1 41 68.3


User provided reference genes

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