Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2920 Fragaria x ananassa HOM05D005591 ORTHO05D007131 7.0e-177 624.0 353 100.0
FvH4_3g16560 Fragaria vesca HOM05D005591 ORTHO05D007131 7.7e-176 620.5 353 99.4
FAN11G3688 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.8e-175 618.2 353 99.2
FAN21G2901 Fragaria x ananassa HOM05D005591 ORTHO05D007131 3.6e-173 611.7 353 98.9
RcHm_v2.0_Chr5g0027591 Rosa chinensis HOM05D005591 ORTHO05D007131 8.0e-165 583.9 353 94.6
FAN25G3010 Fragaria x ananassa HOM05D005591 ORTHO05D007131 5.0e-159 564.7 353 93.5
Prupe.4G148300 Prunus persica HOM05D005591 ORTHO05D007131 6.6e-151 537.7 353 88.7
MD05G1209200 Malus domestica HOM05D005591 ORTHO05D007131 3.5e-144 515.4 353 83.6
MD10G1195600 Malus domestica HOM05D005591 ORTHO05D007131 2.5e-142 509.2 353 84.7
CiPaw.01G109900 Carya illinoinensis HOM05D005591 ORTHO05D007131 5.6e-134 481.5 352 72.4
CANSAT78G0984 Cannabis sativa HOM05D005591 ORTHO05D007131 2.0e-131 473.0 344 79.1
Haze_12970 Corylus avellana HOM05D005591 ORTHO05D007131 2.7e-128 462.6 354 78.0
QL05p063015 Quercus lobata HOM05D005591 ORTHO05D007131 4.6e-128 461.8 352 69.3
Duzib212G0264 Durio zibethinus HOM05D005591 ORTHO05D007131 6.0e-128 461.5 352 71.6
Ciclev10020911m.g Citrus clementina HOM05D005591 ORTHO05D007131 1.9e-126 456.4 352 68.2
Gorai.011G147400 Gossypium raimondii HOM05D005591 ORTHO05D007131 3.3e-126 455.7 358 68.4
CSS0046220 Camellia sinensis var. sinensis HOM05D005591 ORTHO05D007131 9.6e-126 454.1 352 67.9
Actinidia35920 Actinidia chinensis HOM05D005591 ORTHO05D007131 1.2e-125 453.8 351 68.4
Haze_05998 Corylus avellana HOM05D005591 ORTHO05D007131 1.8e-124 449.9 339 79.6
TWI34G1086 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 2.4e-124 449.5 352 66.5
Atru.chr7.136 Acer truncatum HOM05D005591 ORTHO05D007131 8.9e-124 447.6 352 76.1
Eucgr.E02433 Eucalyptus grandis HOM05D005591 ORTHO05D007131 1.5e-123 446.8 331 78.5
Thecc.04G188000 Theobroma cacao HOM05D005591 ORTHO05D007131 5.8e-123 444.9 332 72.0
TWI60G1035 Tripterygium wilfordii HOM05D005591 ORTHO05D007131 3.8e-122 442.2 352 66.8
TAR375G0642 Trochodendron aralioides HOM05D005591 ORTHO05D007131 1.4e-121 440.3 356 66.3
Dinv27163 Davidia involucrata HOM05D005591 ORTHO05D007131 5.4e-121 438.3 354 66.1
Phvul.008G142801 Phaseolus vulgaris HOM05D005591 ORTHO05D007131 5.4e-121 438.3 356 66.3
ClCG00G002040 Citrullus lanatus HOM05D005591 ORTHO05D007131 9.3e-121 437.6 351 67.5
Sed0000259 Sechium edule HOM05D005591 ORTHO05D007131 9.3e-121 437.6 353 67.1
Hma1.2p1_0349F.1_g132330 Hydrangea macrophylla HOM05D005591 ORTHO05D007131 1.6e-120 436.8 352 66.8
Glyma.20G208100 Glycine max HOM05D005591 ORTHO05D007131 2.1e-120 436.4 355 65.9
Potri.002G234400 Populus trichocarpa HOM05D005591 ORTHO05D007131 2.7e-120 436.0 357 66.1
GSVIVG01031642001 Vitis vinifera HOM05D005591 ORTHO05D007131 2.7e-120 436.0 352 67.6
Cfa014468 Carpinus fangiana HOM05D005591 ORTHO05D007131 1.0e-119 434.1 296 86.5
Manes.16G070000 Manihot esculenta HOM05D005591 ORTHO05D007131 1.3e-119 433.7 352 67.3
EL10Ac9g21576 Beta vulgaris HOM05D005591 ORTHO05D007131 2.3e-119 433.0 337 67.1
VMungo0720G0134 Vigna mungo HOM05D005591 ORTHO05D007131 2.3e-119 433.0 356 65.4
Lj2P1154T29 Lonicera japonica HOM05D005591 ORTHO05D007131 3.0e-119 432.6 315 71.4
CsaV3_6G003160 Cucumis sativus L. HOM05D005591 ORTHO05D007131 5.1e-119 431.8 351 67.2
ClCG08G003960 Citrullus lanatus HOM05D005591 ORTHO05D007131 2.5e-118 429.5 340 67.9
Solyc01g100250.3 Solanum lycopersicum HOM05D005591 ORTHO05D007131 2.5e-118 429.5 359 64.6
CAN.G1648.2 Capsicum annuum HOM05D005591 ORTHO05D007131 3.3e-118 429.1 359 64.1
arahy.Tifrunner.gnm1.ann1.ZABD6C Arachis hypogaea HOM05D005591 ORTHO05D007131 5.6e-118 428.3 326 69.3
Gorai.006G226400 Gossypium raimondii HOM05D005591 ORTHO05D007131 5.6e-118 428.3 358 63.7
PGR083G2576 Punica granatum HOM05D005591 ORTHO05D007131 5.6e-118 428.3 357 66.4
Gohir.A09G209100 Gossypium hirsutum HOM05D005591 ORTHO05D007131 7.3e-118 427.9 352 65.3
Gohir.A10G133200 Gossypium hirsutum HOM05D005591 ORTHO05D007131 9.6e-118 427.6 352 66.8
arahy.Tifrunner.gnm1.ann1.8VB164 Arachis hypogaea HOM05D005591 ORTHO05D007131 2.1e-117 426.4 297 73.7
Cc11_g03530 Coffea canephora HOM05D005591 ORTHO05D007131 2.1e-117 426.4 355 71.8
Medtr3g005100 Medicago truncatula HOM05D005591 ORTHO05D007131 2.1e-117 426.4 353 65.2
MELO3C011502.2 Cucumis melo HOM05D005591 ORTHO05D007131 2.8e-117 426.0 351 67.2
CAN.G1273.6 Capsicum annuum HOM05D005591 ORTHO05D007131 8.1e-117 424.5 359 71.6
Nitab4.5_0006072g0030 Nicotiana tabacum HOM05D005591 ORTHO05D007131 8.1e-117 424.5 359 65.2
PGSC0003DMG402024734 Solanum tuberosum HOM05D005591 ORTHO05D007131 8.1e-117 424.5 360 64.7
Peaxi162Scf00673g00002 Petunia axillaris HOM05D005591 ORTHO05D007131 2.4e-116 422.9 324 69.1
Nitab4.5_0000368g0340 Nicotiana tabacum HOM05D005591 ORTHO05D007131 4.0e-116 422.2 324 69.8
Glyma.10G181900 Glycine max HOM05D005591 ORTHO05D007131 5.3e-116 421.8 355 64.2
Gohir.D09G202500 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.3e-116 421.8 358 63.1
Lalb_Chr12g0209371 Lupinus albus HOM05D005591 ORTHO05D007131 1.5e-115 420.2 366 63.7
Psat5g221840 Pisum sativum HOM05D005591 ORTHO05D007131 3.4e-115 419.1 354 64.4
Sabra02G0178800 Salix brachista HOM05D005591 ORTHO05D007131 3.4e-115 419.1 308 71.4
Hund00109 Selenicereus undatus HOM05D005591 ORTHO05D007131 4.5e-115 418.7 346 72.8
Sc08g0001750 Simmondsia chinensis HOM05D005591 ORTHO05D007131 5.8e-115 418.3 354 72.9
AUR62013219 Chenopodium quinoa HOM05D005591 ORTHO05D007131 9.9e-115 417.5 302 71.5
THA.LOC104827705 Tarenaya hassleriana HOM05D005591 ORTHO05D007131 9.9e-115 417.5 352 63.4
AUR62010234 Chenopodium quinoa HOM05D005591 ORTHO05D007131 1.7e-114 416.8 301 71.4
MSTRG.18314 Avicennia marina HOM05D005591 ORTHO05D007131 4.9e-114 415.2 327 68.5
AT1G19800 Arabidopsis thaliana HOM05D005591 ORTHO05D007131 9.3e-113 411.0 315 66.0
ECA232G4773 Erigeron canadensis HOM05D005591 ORTHO05D007131 9.3e-113 411.0 357 72.5
MBI07_g20439_MAGBIO Magnolia biondii HOM05D005591 ORTHO05D007131 1.2e-112 410.6 304 71.7
TPR.G37202 Trifolium pratense HOM05D005591 ORTHO05D007131 1.6e-112 410.2 353 63.5
SalBow4G1474 Salvia bowleyana HOM05D005591 ORTHO05D007131 4.6e-112 408.7 316 69.3
Thhalv10008071m.g Eutrema salsugineum HOM05D005591 ORTHO05D007131 7.9e-112 407.9 314 66.2
Lj3g0022648 Lotus japonicus HOM05D005591 ORTHO05D007131 7.9e-112 407.9 368 62.5
Lalb_Chr12g0205911 Lupinus albus HOM05D005591 ORTHO05D007131 1.0e-111 407.5 355 64.2
Ca_26812_v3 Cicer arietinum L. HOM05D005591 ORTHO05D007131 1.3e-111 407.1 352 63.4
TPR.G25529 Trifolium pratense HOM05D005591 ORTHO05D007131 2.3e-111 406.4 354 63.3
BcaC07g38997 Brassica carinata HOM05D005591 ORTHO05D007131 3.9e-111 405.6 317 65.3
C08p19710 Brassica napus HOM05D005591 ORTHO05D007131 3.9e-111 405.6 317 65.3
COL.COLO4_08690 Corchorus olitorius HOM05D005591 ORTHO05D007131 3.9e-111 405.6 306 71.6
SalBow4G1598 Salvia bowleyana HOM05D005591 ORTHO05D007131 5.1e-111 405.2 319 69.0
BolC8t49608H Brassica oleracea HOM05D005591 ORTHO05D007131 8.7e-111 404.4 317 65.0
Rhsim02G0070200 Rhododendron simsii HOM05D005591 ORTHO05D007131 1.5e-110 403.7 353 70.3
Sp1g17610 Schrenkiella parvula HOM05D005591 ORTHO05D007131 1.5e-110 403.7 314 65.6
AL1G32520 Arabidopsis lyrata HOM05D005591 ORTHO05D007131 7.4e-110 401.4 315 65.1
BcaB03g12900 Brassica carinata HOM05D005591 ORTHO05D007131 7.4e-110 401.4 315 65.4
Nn3g18591 Nelumbo nucifera HOM05D005591 ORTHO05D007131 9.6e-110 401.0 293 72.7
CARHR020310 Cardamine hirsuta HOM05D005591 ORTHO05D007131 1.3e-109 400.6 314 65.3
PSO063G3984 Papaver somniferum HOM05D005591 ORTHO05D007131 1.6e-109 400.2 353 70.8
Oeu061431.3 Olea europaea HOM05D005591 ORTHO05D007131 3.6e-109 399.1 320 67.5
PSO339G5872 Papaver somniferum HOM05D005591 ORTHO05D007131 4.8e-109 398.7 353 70.5
Aa31LG7G4330 Aethionema arabicum HOM05D005591 ORTHO05D007131 8.1e-109 397.9 317 65.0
Carub.0001s1933 Capsella rubella HOM05D005591 ORTHO05D007131 1.4e-108 397.1 319 64.3
Lsat_1_v5_gn_1_5881 Lactuca sativa HOM05D005591 ORTHO05D007131 1.4e-108 397.1 365 64.7
HanXRQChr10g0315741 Helianthus annuus HOM05D005591 ORTHO05D007131 1.8e-108 396.7 301 79.4
CDE02G1973 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 4.0e-108 395.6 309 76.4
C05p18230 Brassica napus HOM05D005591 ORTHO05D007131 6.9e-108 394.8 331 63.7
BraA06t24698Z Brassica rapa HOM05D005591 ORTHO05D007131 1.5e-107 393.7 316 65.2
Aqoxy5G02725 Aquilegia oxysepala HOM05D005591 ORTHO05D007131 5.8e-107 391.7 354 63.0
BolC5t30530H Brassica oleracea HOM05D005591 ORTHO05D007131 7.6e-107 391.3 331 63.4
Migut.D00413 Erythranthe guttata HOM05D005591 ORTHO05D007131 7.6e-107 391.3 319 74.9
A06p15920 Brassica napus HOM05D005591 ORTHO05D007131 1.3e-106 390.6 317 65.3
Gohir.D10G133600 Gossypium hirsutum HOM05D005591 ORTHO05D007131 5.5e-105 385.2 358 61.5
SGA_v2.0_scaffold1G00602 Striga asiatica HOM05D005591 ORTHO05D002031 7.9e-104 381.3 353 59.5
SGA_v2.0_scaffold90G27691 Striga asiatica HOM05D005591 ORTHO05D007131 1.8e-103 380.2 335 60.9
Sopen01g043760 Solanum pennellii HOM05D005591 ORTHO05D007131 5.1e-103 378.6 326 63.2
ATR0681G262 Amborella trichopoda HOM05D005591 ORTHO05D007131 3.3e-102 375.9 317 65.6
SHI22008 Sapria himalayana HOM05D005591 ORTHO05D007131 5.3e-100 368.6 305 64.9
Duzib151G0749 Durio zibethinus HOM05D005591 ORTHO05D007131 5.1e-95 352.1 244 76.6
SEGI_17332 Sequoiadendron giganteum HOM05D005591 ORTHO05D007131 4.8e-93 345.5 300 61.3
Os04g0553000 Oryza sativa ssp. japonica HOM05D005591 ORTHO05D007131 2.6e-91 339.7 258 69.4
Zm00001eb074560 Zea mays HOM05D005591 ORTHO05D007131 1.0e-90 337.8 260 68.1
SMO367G0743 Selaginella moellendorffii HOM05D005591 ORTHO05D007131 2.2e-90 336.7 301 59.1
BcaB07g31994 Brassica carinata HOM05D005591 ORTHO05D007131 5.0e-90 335.5 331 57.1
Pp3c1_16480 Physcomitrium patens HOM05D005591 ORTHO05D007131 2.5e-89 333.2 328 57.3
Mapoly0204s0010 Marchantia polymorpha HOM05D005591 ORTHO05D007131 3.0e-87 326.2 307 57.7
CBR_g24384 Chara braunii HOM05D005591 ORTHO05D007131 1.1e-84 317.8 272 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3947 Anthoceros agrestis HOM05D005591 ORTHO05D007131 7.7e-83 311.6 244 68.0
HPP92_028331 Vanilla planifolia HOM05D005591 ORTHO05D007131 1.0e-82 311.2 268 73.1
Medtr3g008040 Medicago truncatula HOM05D005591 ORTHO05D007131 3.6e-80 302.8 353 53.0
Cre06.g268200 Chlamydomonas reinhardtii HOM05D005591 ORTHO05D007131 1.1e-73 281.2 254 56.7
PRCOL_00005194 Prasinoderma coloniale HOM05D005591 ORTHO05D007131 2.4e-68 263.5 252 54.4
Cpa.g.sc8.310 Carica papaya HOM05D005591 ORTHO05D007131 1.4e-63 247.7 177 76.3
CDE11G0925 Ceratophyllum demersum HOM05D005591 ORTHO05D007131 5.2e-63 245.7 146 87.7
MCO01G348 Micromonas commoda HOM05D005591 ORTHO05D007131 1.1e-60 238.0 249 51.0
vmacro15598 Vaccinium macrocarpon HOM05D005591 ORTHO05D007131 1.6e-56 224.2 307 45.6
CBR_g4088 Chara braunii HOM05D005591 ORTHO05D007131 2.5e-49 200.3 143 72.7
unitig_22.g5460 Utricularia gibba HOM05D005591 ORTHO05D007131 1.2e-48 198.0 168 59.5
unitig_22.g5461 Utricularia gibba HOM05D005591 ORTHO05D007131 1.0e-39 168.3 100 85.0
DCAR_018469 Daucus carota HOM05D005591 ORTHO05D007131 2.2e-37 160.6 101 79.2
DCAR_018470 Daucus carota HOM05D005591 ORTHO05D007131 2.2e-37 160.6 101 79.2
BraA08t34904Z Brassica rapa HOM05D005591 ORTHO05D011946 1.6e-32 144.4 102 65.7
CBR_g4089 Chara braunii HOM05D005591 ORTHO05D007131 7.8e-27 125.6 141 49.6
BcaC05g25857 Brassica carinata HOM05D005591 ORTHO05D007131 1.4e-20 104.8 59 88.1
Actinidia29179 Actinidia chinensis HOM05D005591 ORTHO05D007131 7.6e-14 82.4 225 31.1
Cc01_g18470 Coffea canephora HOM05D005591 ORTHO05D007131 9.2e-12 75.5 44 77.3


User provided reference genes

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