Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.1e-187 656.8 330 100.0
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 5.0e-185 651.0 329 99.1
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.2e-184 647.9 329 98.8
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 9.4e-184 646.7 329 98.2
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 1.2e-183 646.4 329 98.5
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 4.7e-183 644.4 329 98.2
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.0e-174 616.7 329 93.3
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 2.1e-151 539.3 328 81.1
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 6.8e-150 534.3 328 80.2
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 4.9e-148 528.1 326 79.1
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 2.2e-132 476.1 323 70.0
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 9.2e-131 470.7 326 71.2
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 9.2e-131 470.7 329 71.4
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 7.8e-130 467.6 326 71.2
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 4.3e-128 461.8 328 70.7
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 7.3e-128 461.1 326 69.9
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.7e-127 458.4 326 68.4
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 8.1e-127 457.6 326 69.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 8.1e-127 457.6 326 69.0
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 1.8e-126 456.4 326 70.6
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.5e-125 453.4 329 68.4
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 2.6e-125 452.6 327 70.3
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 5.8e-125 451.4 329 68.4
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 7.6e-125 451.1 328 69.8
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 7.6e-125 451.1 330 67.6
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 9.9e-125 450.7 326 70.2
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 4.9e-124 448.4 329 68.1
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 8.4e-124 447.6 320 69.7
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 4.2e-123 445.3 327 67.0
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 7.1e-123 444.5 326 66.9
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 9.2e-123 444.1 328 66.8
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 1.2e-122 443.7 327 64.5
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 1.6e-122 443.4 326 66.0
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 7.8e-122 441.0 326 66.0
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.0e-121 440.7 333 65.2
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 1.7e-121 439.9 332 66.3
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.9e-121 438.7 333 65.2
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 3.9e-121 438.7 328 65.9
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 8.7e-121 437.6 328 64.6
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 1.1e-120 437.2 330 63.9
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 1.9e-120 436.4 333 64.3
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 2.5e-120 436.0 330 63.9
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 2.5e-120 436.0 330 66.1
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 2.5e-120 436.0 328 64.9
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 3.3e-120 435.6 329 65.7
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 4.3e-120 435.3 328 64.3
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 7.3e-120 434.5 330 63.6
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 9.6e-120 434.1 333 63.1
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 9.6e-120 434.1 333 63.4
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.3e-119 433.7 329 68.4
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 1.6e-119 433.3 330 64.2
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 2.1e-119 433.0 330 63.3
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 2.1e-119 433.0 330 63.3
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 2.1e-119 433.0 333 63.1
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 2.8e-119 432.6 330 63.3
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 4.8e-119 431.8 330 64.2
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 4.8e-119 431.8 326 65.3
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 6.2e-119 431.4 330 63.6
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 1.8e-118 429.9 328 65.9
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 5.3e-118 428.3 328 64.3
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 1.2e-117 427.2 330 62.7
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 2.0e-117 426.4 327 65.7
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 2.0e-117 426.4 326 65.3
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 4.4e-117 425.2 329 66.0
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 5.8e-117 424.9 330 62.4
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 1.7e-116 423.3 326 64.4
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 2.2e-116 422.9 326 64.1
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 2.2e-116 422.9 326 65.6
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 8.4e-116 421.0 326 63.8
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 9.3e-115 417.5 359 58.2
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 1.2e-114 417.2 324 65.4
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 1.6e-114 416.8 328 62.5
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 1.0e-113 414.1 320 64.7
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 3.0e-113 412.5 323 63.5
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 5.1e-113 411.8 326 62.3
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 8.7e-113 411.0 325 64.3
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 1.9e-112 409.8 328 62.5
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 3.3e-112 409.1 320 64.7
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 5.6e-112 408.3 320 64.4
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 9.6e-112 407.5 328 62.5
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 9.6e-112 407.5 326 64.4
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 1.3e-111 407.1 326 62.6
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 3.6e-111 405.6 320 64.7
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 3.6e-111 405.6 329 63.2
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 6.2e-111 404.8 326 62.6
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 2.4e-110 402.9 320 63.8
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 6.9e-110 401.4 329 60.8
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 6.9e-110 401.4 319 61.1
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 1.2e-109 400.6 319 61.8
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 3.4e-109 399.1 328 61.3
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 5.8e-109 398.3 328 61.0
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 2.2e-108 396.4 330 59.4
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 3.2e-107 392.5 325 60.3
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 3.2e-107 392.5 324 61.4
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 9.3e-107 391.0 330 60.3
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 9.3e-107 391.0 333 59.8
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 2.7e-106 389.4 331 60.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 6.0e-106 388.3 329 60.8
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 7.9e-106 387.9 330 59.7
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-105 386.7 328 60.1
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 1.8e-105 386.7 328 60.1
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.5e-104 383.6 324 60.2
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 2.8e-103 379.4 324 61.4
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 3.8e-100 369.0 323 57.9
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 1.1e-99 367.5 263 66.5
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 5.5e-99 365.2 322 57.8
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 3.9e-97 359.0 319 55.5
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 2.5e-96 356.3 328 55.5
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 2.1e-95 353.2 287 60.6
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.9e-83 313.5 254 61.8
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 3.0e-81 306.2 332 50.3
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 1.3e-79 300.8 333 45.0
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.1e-75 287.7 344 42.2
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 7.2e-67 258.5 330 42.1
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 7.4e-64 248.4 226 56.2
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 1.6e-58 230.7 254 50.4
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 8.0e-58 228.4 175 64.0
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 1.0e-57 228.0 175 62.3
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 1.8e-57 227.3 175 62.3
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 3.1e-54 216.5 325 38.5
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 3.6e-50 203.0 149 65.8
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 1.2e-48 198.0 136 72.8
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 1.4e-46 191.0 161 59.6
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 3.3e-43 179.9 290 35.2
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 1.2e-40 171.4 142 59.9
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 6.6e-36 155.6 101 76.2
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 3.3e-35 153.3 340 30.3
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 4.3e-35 152.9 109 66.1
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.1e-34 150.6 108 71.3
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 3.6e-34 149.8 118 66.9
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 8.0e-34 148.7 107 65.4
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 1.0e-33 148.3 265 33.2
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 1.0e-33 148.3 123 57.7
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 2.3e-33 147.1 111 68.5
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 1.5e-32 144.4 100 71.0
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 2.0e-32 144.1 100 71.0
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 9.8e-32 141.7 98 66.3
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 5.4e-30 136.0 185 40.5
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.9e-28 129.8 171 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.0e-24 117.5 157 40.8
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 2.0e-24 117.5 184 40.2
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.0e-24 117.5 85 68.2
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.0e-24 117.5 85 68.2
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.9e-23 113.6 165 32.7
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 3.5e-21 106.7 134 47.0
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 2.3e-20 104.0 139 45.3
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 7.3e-19 99.0 134 46.3
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 2.8e-18 97.1 110 46.4
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 8.4e-15 85.5 97 48.5
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 6.6e-12 75.9 58 65.5
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 5.6e-11 72.8 44 79.5
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 9.6e-11 72.0 131 42.0
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.6e-10 70.1 49 69.4
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 5.4e-06 56.2 128 38.3
MCO07G146 Micromonas commoda HOM05D004767 ORTHO05D005674 7.1e-06 55.8 72 41.7
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 9.3e-06 55.5 40 60.0


User provided reference genes

Program Settings