Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 8.5e-232 806.6 396 100.0
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 1.1e-226 789.6 405 96.5
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 3.0e-221 771.5 453 86.5
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 2.8e-214 748.4 445 86.1
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 1.1e-191 673.3 445 76.2
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 1.3e-144 516.9 440 58.2
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 2.5e-143 512.7 445 57.8
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 5.3e-141 505.0 434 58.1
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 4.5e-140 501.9 434 58.3
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 1.1e-138 497.3 431 57.1
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 1.6e-137 493.4 439 56.9
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.7e-137 492.7 428 57.0
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 4.6e-137 491.9 428 56.5
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 1.0e-136 490.7 429 56.9
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 6.7e-136 488.0 445 55.7
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.1e-135 487.3 430 56.5
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 2.5e-135 486.1 445 55.5
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 3.3e-135 485.7 458 54.6
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 7.4e-135 484.6 429 55.0
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 4.8e-134 481.9 429 56.9
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 9.1e-133 477.6 444 54.7
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 1.2e-132 477.2 431 55.9
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 5.9e-132 474.9 437 56.3
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 2.5e-130 469.5 430 56.5
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 2.7e-129 466.1 432 54.6
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 6.1e-129 464.9 424 54.5
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.3e-128 463.0 426 54.0
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 6.7e-128 461.5 410 55.4
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 6.7e-128 461.5 426 53.8
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 3.3e-127 459.1 426 53.5
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 3.7e-126 455.7 428 54.0
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 1.1e-125 454.1 423 53.4
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.4e-125 453.8 495 49.5
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 5.3e-125 451.8 410 56.6
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 1.2e-124 450.7 480 49.2
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 4.5e-124 448.7 474 49.6
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.7e-124 448.0 429 53.8
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 7.7e-124 448.0 444 52.5
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 2.5e-122 443.0 426 53.8
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 2.5e-122 443.0 430 50.9
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 7.2e-122 441.4 433 52.4
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 9.4e-122 441.0 426 51.9
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 9.4e-122 441.0 433 52.0
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 1.2e-121 440.7 426 52.8
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 1.6e-121 440.3 427 52.9
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 2.1e-121 439.9 427 52.5
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 2.1e-121 439.9 427 52.5
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 2.1e-121 439.9 426 52.3
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.7e-121 439.5 427 52.2
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 1.8e-120 436.8 423 51.8
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 3.0e-120 436.0 427 52.5
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 3.0e-120 436.0 427 52.5
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 1.1e-119 434.1 442 50.9
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 1.1e-119 434.1 410 53.2
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 2.6e-119 433.0 431 51.0
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 3.3e-119 432.6 431 50.8
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 4.4e-119 432.2 423 52.2
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 6.3e-118 428.3 440 51.1
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 1.1e-117 427.6 430 49.8
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.1e-117 427.6 434 50.7
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 2.4e-117 426.4 463 47.1
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 3.1e-117 426.0 431 51.0
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 5.3e-117 425.2 438 51.4
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 2.2e-115 419.9 427 50.8
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 3.2e-114 416.0 428 49.8
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 7.2e-114 414.8 431 49.0
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 4.7e-113 412.1 372 55.4
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 5.7e-111 405.2 449 47.0
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 2.4e-109 399.8 410 49.5
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 1.2e-108 397.5 427 46.6
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.0e-108 396.7 432 49.3
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 2.0e-108 396.7 430 47.7
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 7.7e-108 394.8 409 49.6
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 1.3e-107 394.0 425 47.5
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 1.7e-107 393.7 429 48.3
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 3.2e-106 389.4 429 47.8
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.1e-105 386.7 430 48.1
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 5.2e-104 382.1 400 49.2
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 1.2e-100 370.9 353 52.7
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 1.8e-96 357.1 447 47.7
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.5e-95 354.0 425 43.8
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 9.8e-95 351.3 409 47.2
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 9.8e-95 351.3 409 47.2
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 3.9e-91 339.3 344 49.4
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 2.5e-90 336.7 405 42.2
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.7e-84 316.6 351 47.3
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 7.3e-82 308.5 333 47.7
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 9.5e-82 308.1 438 38.1
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 8.0e-81 305.1 455 38.5
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 2.9e-78 296.6 496 36.3
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 1.4e-77 294.3 410 39.3
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 3.6e-73 279.6 178 70.8
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 8.1e-65 251.9 386 38.1
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 5.2e-64 249.2 192 59.9
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 5.4e-61 239.2 191 55.5
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 2.0e-55 220.7 191 55.5
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 1.4e-53 214.5 159 62.9
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 4.6e-52 209.5 180 51.1
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 3.1e-48 196.8 156 59.0
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 7.6e-47 192.2 159 57.2
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 4.3e-42 176.4 153 53.6
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 9.0e-40 168.7 152 49.3
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 1.8e-35 154.5 106 63.2
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 4.8e-33 146.4 131 55.0
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 4.0e-32 143.3 114 57.9
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 1.7e-30 137.9 99 63.6
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.0e-27 128.6 110 55.5
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 5.1e-27 126.3 83 68.7
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 2.5e-26 124.0 95 62.1
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-26 122.9 141 49.6
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-26 122.9 141 49.6
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-26 122.9 141 49.6
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 9.7e-26 122.1 141 48.9
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 1.6e-25 121.3 88 63.6
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 1.3e-22 111.7 80 62.5
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.6e-20 104.8 86 54.7
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 3.9e-19 100.1 78 61.5
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 2.0e-18 97.8 75 61.3
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 3.3e-18 97.1 83 54.2
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 5.7e-18 96.3 100 45.0
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.1e-16 90.1 88 47.7
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 9.1e-16 89.0 50 72.0
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 2.0e-15 87.8 70 57.1
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 4.5e-15 86.7 61 57.4
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.9e-14 84.0 54 64.8
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 1.5e-10 71.6 52 59.6
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 5.7e-10 69.7 64 53.1
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 7.0e-08 62.8 42 64.3
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 9.1e-08 62.4 92 38.0
HPP92_016689 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.2e-07 62.0 43 55.8
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 3.5e-07 60.5 92 37.0
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 3.5e-07 60.5 42 61.9
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 1.0e-06 58.9 92 37.0
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 1.7e-06 58.2 42 59.5


User provided reference genes

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