Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 2.1e-48 195.3 92 100.0
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 1.7e-42 175.6 92 93.5
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.7e-42 175.6 92 93.5
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.7e-42 175.6 92 93.5
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 3.8e-42 174.5 92 92.4
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 1.9e-41 172.2 92 92.4
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 2.1e-40 168.7 92 89.1
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 3.6e-40 167.9 95 88.4
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-40 167.9 95 88.4
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 3.6e-40 167.9 95 88.4
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 3.6e-40 167.9 95 88.4
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 3.6e-40 167.9 95 88.4
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 3.6e-40 167.9 94 88.3
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 3.6e-40 167.9 95 88.4
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.7e-40 167.5 95 88.4
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 4.7e-40 167.5 95 88.4
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 4.7e-40 167.5 90 88.9
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.1e-40 167.2 87 92.0
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 6.1e-40 167.2 95 87.4
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 7.9e-40 166.8 94 87.2
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 7.9e-40 166.8 95 87.4
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 7.9e-40 166.8 95 87.4
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 7.9e-40 166.8 95 87.4
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 7.9e-40 166.8 95 87.4
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.0e-39 166.4 95 87.4
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.4e-39 166.0 95 87.4
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.4e-39 166.0 87 90.8
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.4e-39 166.0 95 87.4
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.4e-39 166.0 95 87.4
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.4e-39 166.0 95 87.4
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 1.4e-39 166.0 87 90.8
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.4e-39 166.0 87 90.8
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.4e-39 166.0 87 90.8
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.4e-39 166.0 95 87.4
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.4e-39 166.0 95 87.4
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.8e-39 165.6 87 90.8
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 1.8e-39 165.6 95 86.3
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 2.3e-39 165.2 94 87.2
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.3e-39 165.2 87 89.7
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 2.3e-39 165.2 87 90.8
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 2.3e-39 165.2 95 86.3
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 2.3e-39 165.2 87 90.8
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 2.3e-39 165.2 95 87.4
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 2.3e-39 165.2 95 86.3
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.3e-39 165.2 95 86.3
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 3.0e-39 164.9 87 90.8
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 90.8
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 90.8
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 3.0e-39 164.9 95 86.3
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 3.0e-39 164.9 94 88.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 3.0e-39 164.9 87 90.8
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 3.0e-39 164.9 95 87.4
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.9e-39 164.5 95 85.3
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 3.9e-39 164.5 95 87.4
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 5.2e-39 164.1 87 90.8
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 5.2e-39 164.1 87 90.8
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 5.2e-39 164.1 87 89.7
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 5.2e-39 164.1 94 88.3
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 5.2e-39 164.1 87 89.7
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 6.7e-39 163.7 95 85.3
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 6.7e-39 163.7 92 88.0
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 6.7e-39 163.7 94 87.2
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 6.7e-39 163.7 87 90.8
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 8.8e-39 163.3 95 86.3
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 8.8e-39 163.3 87 89.7
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 1.1e-38 162.9 87 88.5
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 1.1e-38 162.9 92 88.0
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.5e-38 162.5 87 89.7
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.5e-38 162.5 87 89.7
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 1.5e-38 162.5 95 86.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 1.5e-38 162.5 95 86.3
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.0e-38 162.2 87 89.7
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.0e-38 162.2 94 87.2
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 2.0e-38 162.2 94 86.2
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 2.6e-38 161.8 95 84.2
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.6e-38 161.8 87 88.5
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.6e-38 161.8 87 89.7
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 2.6e-38 161.8 95 86.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.6e-38 161.8 95 84.2
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 2.6e-38 161.8 87 89.7
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 3.3e-38 161.4 87 87.4
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 3.3e-38 161.4 94 84.0
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 3.3e-38 161.4 86 89.5
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 3.3e-38 161.4 86 89.5
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 4.4e-38 161.0 87 88.5
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 5.7e-38 160.6 94 85.1
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 5.7e-38 160.6 95 84.2
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 7.4e-38 160.2 87 87.4
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 7.4e-38 160.2 87 87.4
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 7.4e-38 160.2 94 84.0
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 7.4e-38 160.2 87 87.4
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 7.4e-38 160.2 95 85.3
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 9.7e-38 159.8 94 85.1
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 9.7e-38 159.8 85 89.4
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.3e-37 159.5 86 88.4
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.3e-37 159.5 87 87.4
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 1.7e-37 159.1 95 86.3
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 1.7e-37 159.1 94 84.0
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.7e-37 159.1 86 87.2
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.7e-37 159.1 87 86.2
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 2.2e-37 158.7 92 81.5
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.8e-37 158.3 92 84.8
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 3.7e-37 157.9 93 84.9
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.8e-37 157.5 87 87.4
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 6.3e-37 157.1 95 82.1
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 6.3e-37 157.1 87 87.4
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 6.3e-37 157.1 89 86.5
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 8.2e-37 156.8 95 84.2
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 1.4e-36 156.0 89 86.5
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.8e-36 155.6 92 82.6
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.8e-36 155.6 92 82.6
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.4e-36 155.2 87 83.9
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 3.1e-36 154.8 95 81.1
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 4.1e-36 154.5 95 83.2
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 4.1e-36 154.5 92 82.6
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 4.1e-36 154.5 85 87.1
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 4.1e-36 154.5 81 90.1
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 5.3e-36 154.1 86 82.6
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 7.0e-36 153.7 87 82.8
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 7.0e-36 153.7 97 81.4
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 7.0e-36 153.7 92 81.5
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 7.0e-36 153.7 97 80.4
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 7.0e-36 153.7 103 76.7
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 9.1e-36 153.3 88 84.1
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 3.5e-35 151.4 82 87.8
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 1.0e-34 149.8 82 84.1
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.0e-34 149.8 84 83.3
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 1.7e-34 149.1 81 87.7
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.8e-34 147.9 88 80.7
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 3.8e-34 147.9 88 80.7
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 3.8e-34 147.9 84 81.0
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 5.0e-34 147.5 87 79.3
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.5e-33 146.0 86 79.1
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.9e-33 145.6 88 83.0
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 2.5e-33 145.2 86 80.2
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 3.2e-33 144.8 80 83.8
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 7.2e-33 143.7 83 83.1
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 2.7e-32 141.7 87 75.9
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 4.7e-32 141.0 80 81.2
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 4.7e-32 141.0 80 81.2
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 4.7e-32 141.0 80 81.2
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 4.7e-32 141.0 80 81.2
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 7.5e-30 133.7 84 72.6
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 9.7e-30 133.3 76 80.3
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 6.3e-29 130.6 86 79.1
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 4.1e-28 127.9 63 92.1
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 7.0e-28 127.1 73 80.8
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 3.5e-27 124.8 97 64.9
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 3.5e-27 124.8 74 77.0
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 4.5e-27 124.4 60 93.3
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 5.0e-26 120.9 75 72.0
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 8.5e-26 120.2 62 83.9
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.4e-23 112.8 61 82.0
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 6.3e-21 104.0 78 62.8
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 5.9e-19 97.4 61 80.3
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 1.3e-18 96.3 54 87.0
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 8.0e-16 87.0 52 80.8
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 1.0e-15 86.7 59 71.2
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.5e-14 82.8 50 80.0
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.4e-14 81.3 38 92.1
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 1.7e-13 79.3 84 51.2
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.8e-13 78.6 62 66.1
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 3.7e-13 78.2 60 68.3
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 6.3e-13 77.4 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 6.3e-13 77.4 39 82.1
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 5.4e-12 74.3 52 69.2
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.0e-11 72.4 43 83.7
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 3.5e-11 71.6 53 71.7
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 1.0e-10 70.1 59 64.4
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 5.6e-09 64.3 44 77.3
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 9.5e-09 63.5 44 75.0
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.5e-09 63.5 29 89.7
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.8e-07 59.3 57 52.6
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.0e-07 58.2 44 70.5


User provided reference genes

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