Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 4.5e-280 967.2 477 100.0
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 8.6e-263 909.8 466 95.3
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 7.3e-262 906.7 466 95.5
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 1.2e-261 906.0 466 95.5
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.7e-256 888.3 466 94.8
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 2.6e-219 765.4 477 82.4
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 4.4e-174 615.1 486 65.6
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 2.3e-146 523.1 339 74.9
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 5.1e-138 495.4 497 53.7
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 5.6e-137 491.9 535 52.0
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 1.2e-134 484.2 496 54.4
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 3.8e-133 479.2 485 54.0
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 8.4e-133 478.0 488 52.7
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 4.1e-132 475.7 510 51.4
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 1.9e-129 466.8 484 52.9
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 1.2e-128 464.2 490 52.4
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 5.8e-126 455.3 472 51.9
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 5.4e-124 448.7 456 50.9
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 7.8e-123 444.9 495 49.7
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 3.0e-122 443.0 489 49.9
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 3.9e-122 442.6 481 49.3
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 5.6e-121 438.7 486 49.8
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 9.6e-121 438.0 492 48.6
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 6.2e-120 435.3 498 49.4
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 3.1e-119 433.0 364 58.8
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 5.3e-119 432.2 499 48.9
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 9.9e-118 427.9 480 47.5
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 4.9e-117 425.6 498 50.4
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 8.4e-117 424.9 460 48.9
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 1.1e-116 424.5 460 49.8
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 7.1e-116 421.8 497 47.3
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 3.0e-114 416.4 493 46.5
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 3.9e-114 416.0 462 49.4
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 5.6e-113 412.1 363 55.9
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 1.6e-112 410.6 486 47.7
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 2.1e-112 410.2 488 47.5
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 4.0e-111 406.0 499 45.5
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 5.3e-111 405.6 485 46.8
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 5.3e-111 405.6 551 44.8
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 5.3e-111 405.6 496 44.8
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 2.6e-110 403.3 493 45.0
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 3.4e-110 402.9 448 49.3
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 9.9e-110 401.4 492 45.7
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 2.2e-109 400.2 481 49.1
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 2.2e-109 400.2 476 48.7
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 2.2e-109 400.2 481 46.6
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 4.9e-109 399.1 391 53.5
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 8.4e-109 398.3 482 47.3
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 2.4e-108 396.7 460 49.3
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 9.3e-108 394.8 475 47.4
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 9.3e-108 394.8 418 51.0
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 1.6e-107 394.0 486 48.6
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 3.5e-107 392.9 475 47.4
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 4.6e-107 392.5 481 44.7
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 6.0e-107 392.1 475 46.9
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 6.0e-107 392.1 390 51.8
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 7.9e-107 391.7 489 46.4
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 3.0e-106 389.8 492 45.3
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 3.9e-106 389.4 476 45.6
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 1.1e-105 387.9 474 48.5
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.5e-105 387.5 377 52.8
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 7.4e-105 385.2 471 45.0
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 9.6e-105 384.8 470 46.2
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.1e-104 383.6 470 44.9
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 1.8e-103 380.6 522 42.9
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.1e-100 371.3 444 46.2
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 1.2e-99 367.9 422 48.1
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 3.5e-99 366.3 458 45.6
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.9e-98 362.8 418 47.1
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 3.7e-96 356.3 562 38.4
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 8.2e-96 355.1 423 46.1
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 8.2e-96 355.1 479 46.1
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 6.9e-95 352.1 386 49.7
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.6e-94 350.1 413 46.7
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.2e-92 342.8 340 50.6
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 6.1e-91 339.0 348 49.1
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 2.3e-90 337.0 370 50.0
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.3e-90 337.0 371 47.4
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 4.3e-89 332.8 515 39.6
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 1.4e-87 327.8 426 44.4
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 1.8e-87 327.4 336 51.5
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 2.2e-85 320.5 648 34.0
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 8.5e-85 318.5 372 48.1
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 2.5e-84 317.0 476 38.9
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 5.5e-84 315.8 505 41.4
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 5.5e-84 315.8 393 44.5
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 7.9e-83 312.0 524 40.6
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 8.8e-82 308.5 342 47.7
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.1e-81 308.1 470 41.7
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 3.3e-81 306.6 379 44.9
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 2.8e-80 303.5 381 44.6
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 2.0e-78 297.4 344 47.7
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 5.7e-65 252.7 294 46.3
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 3.1e-63 246.9 230 51.7
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 2.6e-57 227.3 290 44.1
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 2.8e-51 207.2 489 32.1
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 2.0e-49 201.1 209 53.6
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 1.7e-48 198.0 281 42.3
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 5.0e-45 186.4 466 29.6
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 1.6e-43 181.4 181 50.3
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 6.8e-34 149.4 210 41.4
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 3.2e-31 140.6 226 38.5
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.2e-25 122.1 174 42.5
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.9e-23 114.8 335 28.1
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 1.9e-20 104.8 135 40.0
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 2.8e-19 100.9 133 39.1
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 3.9e-13 80.5 102 43.1
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 1.6e-11 75.1 142 40.1
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.6e-11 75.1 150 36.7
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 5.8e-09 66.6 86 44.2
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 9.9e-09 65.9 86 44.2
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 1.7e-08 65.1 91 39.6
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 7.8e-06 56.2 100 39.0


User provided reference genes

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