Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0826 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.5e-121 438.3 227 100.0
FAN21G0602 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.7e-115 418.3 226 96.9
FvH4_3g34030 Fragaria vesca HOM05D002864 ORTHO05D008485 3.2e-106 388.7 218 94.0
FAN11G1817 Fragaria x ananassa HOM05D002864 ORTHO05D008485 3.2e-106 388.7 218 94.0
RcHm_v2.0_Chr5g0061711 Rosa chinensis HOM05D002864 ORTHO05D008485 3.4e-100 368.6 218 89.4
Lalb_Chr11g0070141 Lupinus albus HOM05D002864 ORTHO05D008485 2.2e-46 189.9 187 59.4
Lalb_Chr11g0070221 Lupinus albus HOM05D002864 ORTHO05D008485 2.2e-46 189.9 187 59.4
Rhsim07G0136600 Rhododendron simsii HOM05D002864 ORTHO05D008485 6.3e-46 188.3 181 59.7
A04p09410 Brassica napus HOM05D002864 ORTHO05D008485 1.4e-45 187.2 181 60.2
BolSC28t60372H Brassica oleracea HOM05D002864 ORTHO05D008485 1.4e-45 187.2 181 60.2
BraSC159t45731Z Brassica rapa HOM05D002864 ORTHO05D008485 1.4e-45 187.2 181 60.2
Lalb_Chr00c21g0405201 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-45 187.2 187 58.8
Lalb_Chr00c21g0405251 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-45 187.2 187 58.8
Lalb_Chr00c21g0405391 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-45 187.2 187 58.8
Lalb_Chr00c24g0407171 Lupinus albus HOM05D002864 ORTHO05D008485 1.4e-45 187.2 187 58.8
AT2G07725 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.8e-45 186.8 181 59.7
ATMG00210 Arabidopsis thaliana HOM05D002864 ORTHO05D008485 1.8e-45 186.8 181 59.7
CARHR282720 Cardamine hirsuta HOM05D002864 ORTHO05D008485 1.8e-45 186.8 181 59.7
Psat0ss7220g0040 Pisum sativum HOM05D002864 ORTHO05D008485 1.8e-45 186.8 182 61.0
CANSAT16G0032 Cannabis sativa HOM05D002864 ORTHO05D008485 9.1e-45 184.5 181 59.7
BraSC54t46369Z Brassica rapa HOM05D002864 ORTHO05D008485 1.2e-44 184.1 181 59.7
Nn1g09937 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.2e-44 184.1 183 59.6
Nn1g10176 Nelumbo nucifera HOM05D002864 ORTHO05D008485 1.2e-44 184.1 183 59.6
BolSC28t60317H Brassica oleracea HOM05D002864 ORTHO05D008485 2.0e-44 183.3 179 59.8
BraSC48t46332Z Brassica rapa HOM05D002864 ORTHO05D008485 2.0e-44 183.3 179 59.8
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 2.0e-44 183.3 191 58.1
CARHR288210 Cardamine hirsuta HOM05D002864 ORTHO05D008485 2.6e-44 183.0 181 59.1
LjContig00315g0018050 Lotus japonicus HOM05D002864 ORTHO05D008485 2.6e-44 183.0 181 59.1
LjContig00439g0002067 Lotus japonicus HOM05D002864 ORTHO05D008485 2.6e-44 183.0 181 59.1
LjContig00446g0004288 Lotus japonicus HOM05D002864 ORTHO05D008485 2.6e-44 183.0 181 59.1
Thhalv10001274m.g Eutrema salsugineum HOM05D002864 ORTHO05D008485 3.5e-44 182.6 181 59.1
SalBow1G5070 Salvia bowleyana HOM05D002864 ORTHO05D008485 4.5e-44 182.2 181 60.8
SHI26647 Sapria himalayana HOM05D002864 ORTHO05D008485 1.0e-43 181.0 181 58.0
arahy.Tifrunner.gnm1.ann1.ID22MY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.3e-43 180.6 181 59.1
Sed0011141 Sechium edule HOM05D002864 ORTHO05D008485 2.2e-43 179.9 181 59.1
Sed0025017 Sechium edule HOM05D002864 ORTHO05D008485 2.2e-43 179.9 181 59.1
PGR028G0017 Punica granatum HOM05D002864 ORTHO05D008485 2.9e-43 179.5 182 58.8
CSS0047546 Camellia sinensis var. sinensis HOM05D002864 ORTHO05D008485 1.1e-42 177.6 184 58.7
unitig_87.g28031 Utricularia gibba HOM05D002864 ORTHO05D008485 1.5e-42 177.2 178 58.4
Lj2A1230T121 Lonicera japonica HOM05D002864 ORTHO05D008485 1.9e-42 176.8 189 57.7
SGA_v2.0_scaffold420G51305 Striga asiatica HOM05D002864 ORTHO05D008485 1.9e-42 176.8 186 57.5
TAR371G0939 Trochodendron aralioides HOM05D002864 ORTHO05D008485 1.9e-42 176.8 183 57.4
Lalb_Chr00c21g0405111 Lupinus albus HOM05D002864 ORTHO05D008485 5.5e-42 175.3 188 56.9
AUR62042335 Chenopodium quinoa HOM05D002864 ORTHO05D008485 7.2e-42 174.9 182 57.1
CAN.G366.9 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-41 173.7 181 59.7
CAN.G537.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-41 173.7 181 59.7
CAN.G539.3 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-41 173.7 181 59.7
CAN.G761.1 Capsicum annuum HOM05D002864 ORTHO05D008485 1.6e-41 173.7 181 59.7
Ah.10g028190 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.6e-41 172.6 182 57.1
Ah.10g028740 Amaranthus hybridus HOM05D002864 ORTHO05D007972 3.6e-41 172.6 182 57.1
Solyc00g500362.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 3.6e-41 172.6 207 54.6
Zm00001eb299530 Zea mays HOM05D002864 ORTHO05D008485 2.3e-40 169.9 191 52.4
Aqoxy12s038 Aquilegia oxysepala HOM05D002864 ORTHO05D008485 3.0e-40 169.5 185 55.1
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 8.8e-40 167.9 172 58.7
BraSC48t46241Z Brassica rapa HOM05D002864 ORTHO05D008485 1.1e-39 167.5 179 55.9
Lsat_1_v5_gn_4_66001 Lactuca sativa HOM05D002864 ORTHO05D008485 3.7e-38 162.5 195 51.8
Lsat_1_v5_gn_7_96661 Lactuca sativa HOM05D002864 ORTHO05D008485 1.1e-37 161.0 183 54.1
DCAR_032433 Daucus carota HOM05D002864 ORTHO05D008485 1.4e-37 160.6 182 53.8
HanXRQChr04g0101201 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-36 157.5 183 53.0
HanXRQMTg0579191 Helianthus annuus HOM05D002864 ORTHO05D008485 1.2e-36 157.5 183 53.0
arahy.Tifrunner.gnm1.ann1.I2EFRY Arachis hypogaea HOM05D002864 ORTHO05D008485 1.0e-35 154.5 194 52.1
Solyc00g500312.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 2.2e-35 153.3 169 56.2
HanXRQChr01g0001471 Helianthus annuus HOM05D002864 ORTHO05D008485 2.9e-35 152.9 175 53.1
Solyc00g500260.1 Solanum lycopersicum HOM05D002864 ORTHO05D007972 3.8e-35 152.5 170 57.1
Lalb_Chr07g0190471 Lupinus albus HOM05D002864 ORTHO05D008485 1.9e-34 150.2 187 50.8
SHI40661 Sapria himalayana HOM05D002864 ORTHO05D008485 3.2e-34 149.4 162 55.6
ClCG09G013010 Citrullus lanatus HOM05D002864 ORTHO05D007972 8.0e-33 144.8 157 56.1
Lj2P1221T99 Lonicera japonica HOM05D002864 ORTHO05D008485 1.8e-32 143.7 157 57.3
Peaxi162Scf36888g00001 Petunia axillaris HOM05D002864 ORTHO05D008485 6.8e-32 141.7 156 58.3
Gohir.A06G146200 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.5e-31 140.6 158 53.8
CDE02G2259 Ceratophyllum demersum HOM05D002864 ORTHO05D007972 8.3e-30 134.8 157 53.5
Nitab4.5_0004300g0150 Nicotiana tabacum HOM05D002864 ORTHO05D008485 3.5e-28 129.4 181 49.2
ATR0709G086 Amborella trichopoda HOM05D002864 ORTHO05D008485 5.5e-26 122.1 130 55.4
SEGI_29573 Sequoiadendron giganteum HOM05D002864 ORTHO05D008485 1.0e-24 117.9 174 46.0
Ah.09g227250 Amaranthus hybridus HOM05D002864 ORTHO05D008485 4.0e-24 115.9 147 51.7
AagrBONN_evm.TU.Sc2ySwM_117.2676 Anthoceros agrestis HOM05D002864 ORTHO05D008485 3.4e-23 112.8 175 37.1
arahy.Tifrunner.gnm1.ann1.IM9F8N Arachis hypogaea HOM05D002864 ORTHO05D008485 1.7e-22 110.5 80 71.2
HanXRQChr13g0389461 Helianthus annuus HOM05D002864 ORTHO05D008485 1.1e-21 107.8 143 47.6
Gohir.D12G077000 Gossypium hirsutum HOM05D002864 ORTHO05D008485 1.4e-21 107.5 171 44.4
Actinidia34819 Actinidia chinensis HOM05D002864 ORTHO05D008485 5.4e-21 105.5 69 75.4
CAN.G826.1 Capsicum annuum HOM05D002864 ORTHO05D008485 2.7e-20 103.2 80 65.0
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 5.9e-20 102.1 68 73.5
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 5.9e-20 102.1 68 73.5
Atru.chr6.1811 Acer truncatum HOM05D002864 ORTHO05D008485 1.3e-19 100.9 69 73.9
HanXRQChr13g0393901 Helianthus annuus HOM05D002864 ORTHO05D008485 1.7e-19 100.5 116 55.2
Nitab4.5_0000120g0100 Nicotiana tabacum HOM05D002864 ORTHO05D008485 6.6e-19 98.6 161 44.1
PGSC0003DMG400033612 Solanum tuberosum HOM05D002864 ORTHO05D008485 6.6e-19 98.6 69 71.0
ATR0091G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.9e-18 97.1 69 69.6
CAN.G1001.40 Capsicum annuum HOM05D002864 ORTHO05D008485 2.3e-16 90.1 69 63.8
ATR0015G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.0e-16 89.4 64 67.2
Nitab4.5_0000684g0100 Nicotiana tabacum HOM05D000729 ORTHO05D001063 8.9e-16 88.2 70 65.7
ATR0104G021 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.5e-15 87.4 67 64.2
CAN.G1439.10 Capsicum annuum HOM05D002864 ORTHO05D008485 2.0e-15 87.0 74 62.2
Lsat_1_v5_gn_5_71841 Lactuca sativa HOM05D002864 ORTHO05D008485 4.4e-15 85.9 138 44.9
Lsat_1_v5_gn_7_25860 Lactuca sativa HOM05D002864 ORTHO05D008485 4.4e-15 85.9 129 47.3
arahy.Tifrunner.gnm1.ann1.3LP0N0 Arachis hypogaea HOM05D002864 ORTHO05D008485 1.3e-14 84.3 143 43.4
MELO3C000759.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.3e-14 84.3 83 57.8
MELO3C035260.2 Cucumis melo HOM05D002864 ORTHO05D008485 1.3e-14 84.3 83 57.8
ATR0573G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.1e-13 79.3 64 62.5
ATR0004G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 2.0e-12 77.0 63 57.1
ATR0573G002 Amborella trichopoda HOM05D007099 ORTHO05D009081 3.5e-12 76.3 61 65.6
CAN.G502.17 Capsicum annuum HOM05D002864 ORTHO05D008485 1.0e-11 74.7 67 59.7
MELO3C005021.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.3e-11 73.6 116 44.8
MELO3C035317.2 Cucumis melo HOM05D002864 ORTHO05D008485 2.3e-11 73.6 116 44.0
ATR1100G026 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.1e-10 71.2 51 66.7
ATR0959G001 Amborella trichopoda HOM05D002864 ORTHO05D008485 1.8e-08 63.9 49 63.3
Mapoly0023s0175 Marchantia polymorpha HOM05D002864 ORTHO05D008485 3.4e-07 59.7 63 46.0
ATR0135G003 Amborella trichopoda HOM05D002864 ORTHO05D008485 4.4e-07 59.3 37 73.0
Solyc09g050040.1 Solanum lycopersicum HOM05D002864 ORTHO05D008485 7.5e-07 58.5 105 44.8
MELO3C013035.2 Cucumis melo HOM05D002864 ORTHO05D008485 3.7e-06 56.2 57 52.6
CAN.G1542.4 Capsicum annuum HOM05D002864 ORTHO05D008485 4.9e-06 55.8 100 43.0


User provided reference genes

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