Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0715 Fragaria x ananassa HOM05D002708 ORTHO05D003516 6.0e-28 126.7 61 100.0
FAN05G3540 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.6e-12 74.3 42 78.6
FvH4_6g00800 Fragaria vesca HOM05D002708 ORTHO05D003516 4.6e-12 73.9 42 78.6
FAN09G1379 Fragaria x ananassa HOM05D002708 ORTHO05D003516 4.6e-12 73.9 42 78.6
FAN14G0317 Fragaria x ananassa HOM05D002708 ORTHO05D003516 4.6e-12 73.9 42 78.6
RcHm_v2.0_Chr3g0448281 Rosa chinensis HOM05D002708 ORTHO05D003516 2.3e-11 71.6 42 76.2
FAN02G3944 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.0e-11 71.2 37 86.5
FAN14G3709 Fragaria x ananassa HOM05D002708 ORTHO05D003516 3.0e-11 71.2 37 86.5
Dinv44002 Davidia involucrata HOM05D002708 ORTHO05D003516 8.8e-11 69.7 42 73.8
TWI32G0606 Tripterygium wilfordii HOM05D002708 ORTHO05D003516 8.8e-11 69.7 42 71.4
arahy.Tifrunner.gnm1.ann1.9YLT9A Arachis hypogaea HOM05D002708 ORTHO05D003516 1.5e-10 68.9 42 73.8
arahy.Tifrunner.gnm1.ann1.V30RJW Arachis hypogaea HOM05D002708 ORTHO05D003516 1.5e-10 68.9 42 73.8
Cfa017363 Carpinus fangiana HOM05D002708 ORTHO05D003516 1.5e-10 68.9 42 73.8
Haze_20811 Corylus avellana HOM05D002708 ORTHO05D003516 1.5e-10 68.9 42 73.8
Lsat_1_v5_gn_1_83221 Lactuca sativa HOM05D002708 ORTHO05D003516 2.6e-10 68.2 42 71.4
Lj1g0008805 Lotus japonicus HOM05D002708 ORTHO05D003516 2.6e-10 68.2 44 68.2
Sabra06G0209700 Salix brachista HOM05D002708 ORTHO05D003516 2.6e-10 68.2 44 70.5
DCAR_029539 Daucus carota HOM05D002708 ORTHO05D003516 3.3e-10 67.8 42 71.4
Lj1g0003503 Lotus japonicus HOM05D002708 ORTHO05D003516 3.3e-10 67.8 42 71.4
Sed0015739 Sechium edule HOM05D002708 ORTHO05D003516 3.3e-10 67.8 42 71.4
Cpa.g.sc17.146 Carica papaya HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
ClCG09G010490 Citrullus lanatus HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
MELO3C013234.2 Cucumis melo HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
MELO3C023701.2 Cucumis melo HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
CsaV3_7G021200 Cucumis sativus L. HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
CsaV3_7G024030 Cucumis sativus L. HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
ECA248G0935 Erigeron canadensis HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Glyma.03G002400 Glycine max HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Glyma.07G107700 Glycine max HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
HanXRQChr11g0341881 Helianthus annuus HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
HanXRQChr11g0352181 Helianthus annuus HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Hma1.2p1_0021F.1_g014376 Hydrangea macrophylla HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Lj9A548G53 Lonicera japonica HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Lalb_Chr08g0244681 Lupinus albus HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Lalb_Chr23g0268061 Lupinus albus HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
MD04G1241100 Malus domestica HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Manes.03G006600 Manihot esculenta HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Manes.16G132500 Manihot esculenta HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Phvul.009G084000 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Phvul.009G084100 Phaseolus vulgaris HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
Prupe.6G358600 Prunus persica HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
vmacro21095 Vaccinium macrocarpon HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
VMungo1309G2216 Vigna mungo HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
GSVIVG01036012001 Vitis vinifera HOM05D002708 ORTHO05D003516 4.4e-10 67.4 42 71.4
EL10Ac4g08928 Beta vulgaris HOM05D002708 ORTHO05D003516 5.7e-10 67.0 42 71.4
Ca_15806_v3 Cicer arietinum L. HOM05D002708 ORTHO05D003516 5.7e-10 67.0 42 69.0
Ciclev10007609m.g Citrus clementina HOM05D002708 ORTHO05D003516 5.7e-10 67.0 42 69.0
MBI19_g28098_MAGBIO Magnolia biondii HOM05D002708 ORTHO05D003516 5.7e-10 67.0 42 71.4
Hund22205 Selenicereus undatus HOM05D002708 ORTHO05D003516 5.7e-10 67.0 42 71.4
TAR375G0149 Trochodendron aralioides HOM05D002708 ORTHO05D003516 5.7e-10 67.0 39 76.9
ATR0693G135 Amborella trichopoda HOM05D002708 ORTHO05D003516 9.7e-10 66.2 42 69.0
ATR0794G148 Amborella trichopoda HOM05D002708 ORTHO05D003516 9.7e-10 66.2 42 69.0
ClCG09G010530 Citrullus lanatus HOM05D002708 ORTHO05D003516 9.7e-10 66.2 38 78.9
CSS0041941 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
COL.COLO4_17667 Corchorus olitorius HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
Duzib052G0664 Durio zibethinus HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
Gohir.A12G046100 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
Gorai.008G047600 Gossypium raimondii HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
Lsat_1_v5_gn_7_11740 Lactuca sativa HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
Os10g0569200 Oryza sativa ssp. japonica HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 71.4
Thecc.02G010700 Theobroma cacao HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
TAR375G0643 Trochodendron aralioides HOM05D002708 ORTHO05D003516 1.3e-09 65.9 42 69.0
Gohir.A03G216900 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.7e-09 65.5 42 66.7
Gohir.D02G238500 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.7e-09 65.5 42 66.7
Gorai.005G267000 Gossypium raimondii HOM05D002708 ORTHO05D003516 1.7e-09 65.5 42 66.7
EL10Ac5g11414 Beta vulgaris HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 66.7
AUR62004771 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 66.7
AUR62037481 Chenopodium quinoa HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 66.7
Cc00_g16980 Coffea canephora HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 69.0
Eucgr.J02249 Eucalyptus grandis HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 69.0
Nn3g18494 Nelumbo nucifera HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 69.0
Oeu002888.1 Olea europaea HOM05D002708 ORTHO05D003516 2.2e-09 65.1 39 71.8
Oeu037396.1 Olea europaea HOM05D002708 ORTHO05D003516 2.2e-09 65.1 39 71.8
PGR031G2892 Punica granatum HOM05D002708 ORTHO05D003516 2.2e-09 65.1 42 69.0
Nn4g24628 Nelumbo nucifera HOM05D002708 ORTHO05D003516 2.8e-09 64.7 42 69.0
unitig_0.g1327 Utricularia gibba HOM05D002708 ORTHO05D003516 2.8e-09 64.7 39 71.8
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.8e-09 64.7 39 71.8
Zm00001eb024200 Zea mays HOM05D002708 ORTHO05D003516 2.8e-09 64.7 42 69.0
MSTRG.20407 Avicennia marina HOM05D002708 ORTHO05D003516 3.7e-09 64.3 39 71.8
A04p19190 Brassica napus HOM05D002708 ORTHO05D003516 3.7e-09 64.3 42 66.7
BraA04t17520Z Brassica rapa HOM05D002708 ORTHO05D003516 3.7e-09 64.3 42 66.7
CDE01G0349 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 3.7e-09 64.3 42 66.7
CDE12G0538 Ceratophyllum demersum HOM05D002708 ORTHO05D003516 3.7e-09 64.3 42 66.7
SalBow5G4312 Salvia bowleyana HOM05D002708 ORTHO05D003516 3.7e-09 64.3 39 71.8
Cre03.g190100 Chlamydomonas reinhardtii HOM05D002708 ORTHO05D003516 4.8e-09 63.9 42 64.3
ECA248G3827 Erigeron canadensis HOM05D002708 ORTHO05D003516 4.8e-09 63.9 42 66.7
PSO017G2439 Papaver somniferum HOM05D002708 ORTHO05D003516 4.8e-09 63.9 42 69.0
PSO063G5514 Papaver somniferum HOM05D002708 ORTHO05D003516 4.8e-09 63.9 42 69.0
PSO782G1674 Papaver somniferum HOM05D002708 ORTHO05D003516 4.8e-09 63.9 42 69.0
Sc20g0000810 Simmondsia chinensis HOM05D002708 ORTHO05D003516 4.8e-09 63.9 42 66.7
CSS0024835 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 6.3e-09 63.5 42 66.7
CSS0029201 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 6.3e-09 63.5 42 66.7
CSS0039264 Camellia sinensis var. sinensis HOM05D002708 ORTHO05D003516 6.3e-09 63.5 42 66.7
SEGI_28578 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 6.3e-09 63.5 42 69.0
AagrBONN_evm.TU.Sc2ySwM_117.472 Anthoceros agrestis HOM05D002708 ORTHO05D003516 8.2e-09 63.2 42 64.3
Aqoxy7G03410 Aquilegia oxysepala HOM05D002708 ORTHO05D003516 8.2e-09 63.2 42 66.7
Psat5g034880 Pisum sativum HOM05D002708 ORTHO05D003516 8.2e-09 63.2 42 64.3
SGA_v2.0_scaffold578G53025 Striga asiatica HOM05D002708 ORTHO05D003516 8.2e-09 63.2 39 69.2
Gohir.D12G045200 Gossypium hirsutum HOM05D002708 ORTHO05D003516 1.1e-08 62.8 42 66.7
Pp3c11_25960 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.1e-08 62.8 42 64.3
Pp3c7_370 Physcomitrium patens HOM05D002708 ORTHO05D003516 1.1e-08 62.8 42 64.3
SEGI_02227 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.1e-08 62.8 42 69.0
SEGI_26246 Sequoiadendron giganteum HOM05D002708 ORTHO05D003516 1.1e-08 62.8 42 69.0
HanXRQChr03g0088081 Helianthus annuus HOM05D002708 ORTHO05D003516 1.8e-08 62.0 42 61.9
Nitab4.5_0001476g0150 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.8e-08 62.0 42 61.9
Nitab4.5_0009957g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.8e-08 62.0 42 61.9
Nitab4.5_0012432g0010 Nicotiana tabacum HOM05D002708 ORTHO05D003516 1.8e-08 62.0 42 61.9
Peaxi162Scf01124g00013 Petunia axillaris HOM05D002708 ORTHO05D003516 1.8e-08 62.0 42 61.9
SGA_v2.0_scaffold85G26804 Striga asiatica HOM05D002708 ORTHO05D003516 1.8e-08 62.0 42 61.9
Actinidia21606 Actinidia chinensis HOM05D002708 ORTHO05D003516 2.4e-08 61.6 42 64.3
Actinidia33292 Actinidia chinensis HOM05D002708 ORTHO05D003516 2.4e-08 61.6 42 64.3
COL.COLO4_30887 Corchorus olitorius HOM05D002708 ORTHO05D003516 2.4e-08 61.6 42 61.9
Sed0010327 Sechium edule HOM05D002708 ORTHO05D003516 3.1e-08 61.2 42 61.9
TPR.G21430 Trifolium pratense HOM05D002708 ORTHO05D003516 3.1e-08 61.2 42 61.9
MCO03G077 Micromonas commoda HOM05D002708 ORTHO05D003516 4.1e-08 60.8 42 59.5
CAN.G1480.4 Capsicum annuum HOM05D002708 ORTHO05D003516 6.9e-08 60.1 42 57.1
Medtr3g105430 Medicago truncatula HOM05D002708 ORTHO05D003516 6.9e-08 60.1 42 61.9
PRCOL_00000791 Prasinoderma coloniale HOM05D002708 ORTHO05D003516 6.9e-08 60.1 44 59.1
Solyc01g088370.3 Solanum lycopersicum HOM05D002708 ORTHO05D003516 6.9e-08 60.1 42 57.1
Sopen01g035200 Solanum pennellii HOM05D002708 ORTHO05D003516 6.9e-08 60.1 42 57.1
PGSC0003DMG400001674 Solanum tuberosum HOM05D002708 ORTHO05D003516 6.9e-08 60.1 42 57.1
TPR.G40117 Trifolium pratense HOM05D002708 ORTHO05D003516 6.9e-08 60.1 42 61.9
Mapoly0108s0028 Marchantia polymorpha HOM05D002708 ORTHO05D003516 9.1e-08 59.7 42 59.5
CBR_g32387 Chara braunii HOM05D002708 ORTHO05D003516 1.5e-07 58.9 42 59.5
Psat6g059000 Pisum sativum HOM05D002708 ORTHO05D003516 1.5e-07 58.9 42 64.3
Aa31LG1G4150 Aethionema arabicum HOM05D002708 ORTHO05D003516 4.5e-07 57.4 42 57.1
Sabra18G0018700 Salix brachista HOM05D002708 ORTHO05D003516 7.7e-07 56.6 42 59.5
Lsat_1_v5_gn_8_82921 Lactuca sativa HOM05D002708 ORTHO05D003516 6.5e-06 53.5 40 55.0


User provided reference genes

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