Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.3e-83 312.8 237 100.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.1e-80 302.0 234 96.2
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 3.5e-79 298.9 236 98.3
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.5e-77 293.5 236 90.7
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.5e-62 241.1 206 97.6
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.2e-58 230.7 238 77.7
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.6e-55 220.3 234 82.5
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 4.5e-55 218.8 244 57.0
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.9e-55 218.4 126 88.1
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.7e-54 216.9 231 61.0
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 2.3e-54 216.5 237 63.7
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.9e-54 216.1 232 66.8
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 5.0e-54 215.3 232 66.4
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 5.0e-54 215.3 232 66.4
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.1e-53 214.2 125 88.8
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.5e-53 213.8 233 70.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.5e-53 213.8 233 70.0
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.9e-53 213.4 232 59.1
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.5e-53 213.0 242 56.2
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 4.2e-53 212.2 232 58.6
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 4.2e-53 212.2 232 77.6
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 4.2e-53 212.2 241 60.2
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.5e-53 211.8 126 86.5
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 9.5e-53 211.1 124 83.9
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.2e-52 210.7 234 57.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.2e-52 210.7 242 59.1
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 1.6e-52 210.3 233 57.1
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 1.6e-52 210.3 232 66.4
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 2.1e-52 209.9 232 78.4
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 3.6e-52 209.1 232 57.8
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 3.6e-52 209.1 128 83.6
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.7e-52 208.8 233 56.2
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 8.0e-52 208.0 126 84.9
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.8e-51 206.8 241 52.3
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 5.2e-51 205.3 126 83.3
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 5.2e-51 205.3 244 57.0
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 6.8e-51 204.9 232 65.5
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.9e-51 204.5 234 57.3
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 8.9e-51 204.5 240 54.6
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.2e-50 204.1 232 50.0
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.5e-50 203.8 231 57.6
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-50 203.8 232 53.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.5e-50 203.8 232 69.8
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 2.0e-50 203.4 232 59.9
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.0e-50 203.4 232 64.2
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.0e-50 203.4 232 64.2
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.0e-50 203.4 126 81.7
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 2.6e-50 203.0 232 60.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.6e-50 203.0 128 78.9
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.6e-50 203.0 232 63.8
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-50 202.6 232 52.6
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 3.4e-50 202.6 232 52.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 4.4e-50 202.2 121 85.1
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 4.4e-50 202.2 269 62.5
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 4.4e-50 202.2 237 59.9
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 7.5e-50 201.4 239 54.0
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.8e-50 201.1 232 57.3
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 9.8e-50 201.1 232 56.9
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.3e-49 200.7 125 83.2
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.7e-49 200.3 233 54.5
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 2.2e-49 199.9 232 52.6
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 2.2e-49 199.9 231 57.1
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.2e-49 199.9 232 54.7
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 2.2e-49 199.9 127 77.2
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.2e-49 199.9 127 79.5
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.2e-49 199.9 234 54.3
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.8e-49 199.5 126 78.6
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.8e-49 199.5 126 81.0
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.8e-49 199.5 126 81.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 2.8e-49 199.5 125 82.4
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.8e-49 199.5 235 61.3
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 4.9e-49 198.7 234 60.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.3e-49 198.0 232 53.4
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 8.3e-49 198.0 232 51.7
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 1.1e-48 197.6 237 52.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.4e-48 197.2 232 53.4
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.8e-48 196.8 232 51.7
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.8e-48 196.8 232 65.5
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 4.1e-48 195.7 232 51.7
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.1e-48 195.7 125 76.0
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 5.4e-48 195.3 232 54.7
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 9.2e-48 194.5 125 79.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 4.5e-47 192.2 233 61.4
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 5.9e-47 191.8 240 52.1
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.3e-46 189.9 125 76.0
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 2.3e-46 189.9 239 60.3
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 2.3e-46 189.9 232 50.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.3e-46 189.9 241 51.9
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 2.9e-46 189.5 232 50.0
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 3.9e-46 189.1 126 74.6
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 6.6e-46 188.3 126 73.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.6e-46 188.0 253 47.4
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 8.6e-46 188.0 235 57.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.1e-45 187.6 126 73.8
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.1e-45 187.6 126 73.8
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-45 187.6 126 73.8
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 3.3e-45 186.0 232 51.7
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 7.3e-45 184.9 125 73.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 9.5e-45 184.5 127 72.4
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 9.5e-45 184.5 127 72.4
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 9.5e-45 184.5 126 72.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 1.2e-44 184.1 127 71.7
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.6e-44 183.7 126 73.8
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 4.7e-44 182.2 125 72.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.4e-43 180.6 133 69.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 2.3e-43 179.9 203 53.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 5.2e-43 178.7 129 72.9
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 6.8e-43 178.3 222 50.5
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.2e-42 177.6 220 52.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-42 177.6 111 81.1
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.0e-42 176.8 235 49.4
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.6e-42 176.4 232 50.9
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.4e-42 175.6 105 84.8
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.3e-41 174.1 214 50.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 9.2e-40 167.9 108 86.1
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 2.7e-39 166.4 124 71.0
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 3.5e-39 166.0 237 45.6
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.7e-38 163.7 125 69.6
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.8e-36 156.4 125 63.2
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 1.8e-35 153.7 122 67.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 2.3e-35 153.3 126 62.7
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.2e-35 152.1 125 60.8
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 5.2e-35 152.1 95 77.9
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 6.8e-35 151.8 124 62.1
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 8.9e-35 151.4 127 63.8
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.5e-34 150.6 128 60.9
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 7.5e-34 148.3 101 75.2
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-33 146.7 195 67.2
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 4.6e-31 139.0 112 66.1
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.9e-30 136.0 131 57.3
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 5.1e-30 135.6 133 57.9
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 6.6e-30 135.2 199 55.3
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 8.6e-30 134.8 129 56.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-29 134.0 126 60.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-29 134.0 232 41.8
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 4.3e-29 132.5 243 39.1
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 4.3e-29 132.5 243 39.1
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.1e-28 130.2 190 49.5
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 8.1e-28 128.3 200 48.0
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-27 127.5 128 55.5
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.2e-27 125.6 82 84.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 5.2e-27 125.6 84 76.2
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 3.4e-26 122.9 102 57.8
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 3.2e-24 116.3 190 50.0
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 4.6e-23 112.5 137 50.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-19 100.5 79 68.4
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 3.8e-17 92.8 158 46.2
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.0e-14 84.7 90 51.1
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.0e-14 84.7 48 81.2
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 8.7e-14 81.6 180 39.4
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.3e-13 79.3 157 41.4
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.1e-12 77.0 65 61.5
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.4e-11 73.6 101 39.6
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.2e-09 67.0 41 70.7
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 3.8e-09 66.2 99 35.4
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 4.9e-09 65.9 52 63.5
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 1.4e-08 64.3 37 75.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 9.3e-08 61.6 111 37.8


User provided reference genes

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