Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 8.3e-141 503.8 279 100.0
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.3e-135 485.7 279 96.4
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.5e-134 480.7 279 95.0
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.9e-132 476.1 279 93.9
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 5.6e-113 411.4 244 94.3
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 2.1e-99 366.3 246 84.6
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 2.5e-92 342.8 244 71.7
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 1.8e-90 336.7 244 70.5
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 3.9e-90 335.5 244 71.7
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 2.8e-72 276.2 313 52.4
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 2.7e-67 259.6 221 62.9
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 7.9e-67 258.1 221 62.4
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 5.9e-62 241.9 242 59.1
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.0e-61 241.1 244 55.3
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 2.2e-61 240.0 284 51.4
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 5.0e-61 238.8 281 51.2
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 4.2e-60 235.7 245 54.3
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 1.4e-58 230.7 244 57.0
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.4e-58 230.7 243 54.3
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 1.5e-57 227.3 243 52.7
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 9.7e-57 224.6 244 50.0
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 3.7e-56 222.6 312 44.9
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 3.7e-56 222.6 312 44.9
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 3.7e-56 222.6 243 51.9
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.4e-55 220.7 243 53.1
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.2e-54 217.6 242 52.5
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 2.0e-54 216.9 243 55.6
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.7e-53 213.8 289 47.1
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 2.2e-53 213.4 280 47.9
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.9e-53 213.0 240 50.0
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 3.8e-53 212.6 247 55.5
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.9e-52 210.3 240 50.0
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 3.2e-52 209.5 240 53.3
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 4.2e-52 209.1 243 54.7
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 5.5e-52 208.8 243 50.6
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 8.0e-51 204.9 243 50.2
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 1.0e-50 204.5 243 51.9
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.3e-50 203.4 243 51.9
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.0e-50 203.0 243 51.9
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 1.2e-46 191.0 243 47.7
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 4.5e-46 189.1 247 52.6
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 1.7e-45 187.2 252 46.0
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 6.1e-43 178.7 250 44.0
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 5.7e-41 172.2 243 43.2
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 1.3e-40 171.0 241 47.7
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 2.8e-40 169.9 247 46.2
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.1e-39 167.9 246 43.9
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.4e-39 167.5 278 42.8
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 2.4e-39 166.8 250 43.6
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 3.1e-39 166.4 247 46.2
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 4.1e-39 166.0 223 48.0
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 4.1e-39 166.0 246 43.9
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.0e-38 163.7 243 49.0
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.3e-37 161.0 189 46.6
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 6.6e-37 158.7 316 37.0
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 2.5e-36 156.8 241 41.9
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.5e-36 156.8 242 39.7
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 4.3e-36 156.0 239 41.8
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 4.7e-35 152.5 242 40.9
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 1.0e-34 151.4 240 39.6
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.4e-34 151.0 202 43.6
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 1.8e-34 150.6 244 41.4
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 2.3e-34 150.2 200 44.0
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 4.0e-34 149.4 244 42.2
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 6.8e-34 148.7 249 43.0
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 1.2e-33 147.9 230 42.2
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 1.2e-33 147.9 105 75.2
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 3.4e-33 146.4 293 42.7
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 5.7e-33 145.6 231 42.4
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 7.5e-33 145.2 242 39.3
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 9.8e-33 144.8 246 45.9
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 9.8e-33 144.8 240 40.8
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 3.7e-32 142.9 279 40.1
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 3.7e-32 142.9 242 38.0
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 7.0e-31 138.7 245 38.4
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 7.0e-31 138.7 247 42.9
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 1.6e-30 137.5 245 37.6
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 2.0e-30 137.1 248 40.3
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 7.8e-30 135.2 244 41.0
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 7.8e-30 135.2 239 37.2
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 2.3e-29 133.7 234 38.9
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 5.0e-29 132.5 245 42.4
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 8.6e-29 131.7 274 37.6
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 2.5e-28 130.2 250 45.2
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 1.2e-27 127.9 247 37.7
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.6e-27 127.5 207 42.0
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.6e-27 127.5 241 36.9
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 6.2e-27 125.6 236 39.0
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 3.1e-26 123.2 233 38.2
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 3.1e-26 123.2 166 45.2
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 9.8e-25 118.2 227 39.6
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 9.8e-25 118.2 245 41.6
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 1.7e-24 117.5 218 40.8
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 2.9e-24 116.7 250 36.8
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 2.9e-24 116.7 250 36.8
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 2.4e-23 113.6 247 38.5
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 2.4e-23 113.6 247 38.5
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 4.1e-23 112.8 248 37.5
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 9.2e-23 111.7 247 36.8
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 9.2e-23 111.7 247 36.8
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 3.0e-21 106.7 223 35.9
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 5.6e-20 102.4 246 36.6
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 7.3e-20 102.1 262 30.9
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 9.5e-20 101.7 199 42.7
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 4.7e-19 99.4 200 35.0
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 6.2e-19 99.0 302 34.8
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 1.1e-18 98.2 248 32.7
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.4e-18 97.8 247 33.6
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 3.1e-18 96.7 205 37.1
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 6.8e-18 95.5 204 34.8
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 2.0e-17 94.0 241 32.0
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.6e-17 93.6 227 36.1
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 5.8e-17 92.4 238 37.8
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 7.5e-17 92.0 216 33.3
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 9.2e-15 85.1 197 32.0
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 4.6e-14 82.8 277 31.8
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.9e-12 77.4 194 41.8
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 4.3e-12 76.3 126 34.9
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 3.6e-11 73.2 160 32.5
RcHm_v2.0_Chr5g0013401 Rosa chinensis HOM05D004468 ORTHO05D011136 4.7e-11 72.8 38 86.8
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 6.2e-11 72.4 209 36.4
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 1.4e-10 71.2 201 42.8
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 4.4e-09 66.2 140 37.9
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 4.4e-09 66.2 194 40.7
CiPaw.09G126700 Carya illinoinensis HOM05D004468 ORTHO05D011136 1.4e-07 61.2 38 68.4
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 3.2e-07 60.1 90 48.9
Prupe.4G077000 Prunus persica HOM05D004468 ORTHO05D011136 3.2e-07 60.1 38 68.4
Thecc.06G154100 Theobroma cacao HOM05D004468 ORTHO05D011136 3.2e-07 60.1 38 65.8
Gohir.A05G150100 Gossypium hirsutum HOM05D004468 ORTHO05D011136 7.1e-07 58.9 38 65.8
Gohir.D05G152700 Gossypium hirsutum HOM05D004468 ORTHO05D011136 7.1e-07 58.9 38 65.8
Manes.15G118900 Manihot esculenta HOM05D004468 ORTHO05D011136 7.1e-07 58.9 38 65.8
Gohir.A10G039000 Gossypium hirsutum HOM05D004468 ORTHO05D011136 1.2e-06 58.2 38 63.2
Gorai.009G156800 Gossypium raimondii HOM05D004468 ORTHO05D011136 1.6e-06 57.8 36 69.4
Manes.17G067500 Manihot esculenta HOM05D004468 ORTHO05D011136 1.6e-06 57.8 38 65.8
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 2.1e-06 57.4 68 44.1
Gohir.D10G039800 Gossypium hirsutum HOM05D004468 ORTHO05D011136 3.5e-06 56.6 38 63.2
CiPaw.10G093600 Carya illinoinensis HOM05D004468 ORTHO05D011136 4.6e-06 56.2 38 60.5
CsaV3_6G051550 Cucumis sativus L. HOM05D004468 ORTHO05D011136 4.6e-06 56.2 38 65.8
Potri.011G080100 Populus trichocarpa HOM05D004468 ORTHO05D011136 7.8e-06 55.5 38 57.9


User provided reference genes

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