Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.7e-43 179.5 209 100.0
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.5e-25 120.6 201 87.1
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.4e-23 113.2 50 98.0
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 3.1e-23 112.8 50 96.0
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.7e-21 107.1 191 85.3
CDE05G3172 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 6.5e-21 105.1 48 91.7
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 3.2e-20 102.8 221 74.7
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 6.0e-19 98.6 203 76.8
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.5e-17 93.2 53 92.5
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.5e-17 93.2 53 92.5
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 9.6e-17 91.3 276 50.4
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 2.4e-15 86.7 53 90.6
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 3.1e-15 86.3 53 83.0
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.5e-14 84.0 51 80.4
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 2.0e-14 83.6 53 86.8
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 2.6e-14 83.2 49 85.7
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 3.4e-14 82.8 50 82.0
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 3.4e-14 82.8 50 82.0
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 3.4e-14 82.8 47 87.2
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 4.5e-14 82.4 40 90.0
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 1.0e-13 81.3 51 76.5
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.0e-13 81.3 53 79.2
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.0e-13 81.3 53 75.5
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 1.7e-13 80.5 47 83.0
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 1.7e-13 80.5 47 83.0
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.7e-13 80.5 53 77.4
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.7e-13 80.5 53 75.5
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.2e-13 80.1 53 81.1
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 2.2e-13 80.1 53 75.5
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 2.2e-13 80.1 53 75.5
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 2.9e-13 79.7 50 78.0
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.8e-13 79.3 48 83.3
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.8e-13 79.3 48 83.3
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 3.8e-13 79.3 52 75.0
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.0e-13 79.0 53 81.1
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 5.0e-13 79.0 200 70.5
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 6.5e-13 78.6 53 75.5
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 1.4e-12 77.4 47 78.7
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 1.9e-12 77.0 49 77.6
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.9e-12 77.0 53 71.7
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 2.5e-12 76.6 49 79.6
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 2.5e-12 76.6 50 76.0
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 2.5e-12 76.6 50 76.0
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 2.5e-12 76.6 53 71.7
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 2.5e-12 76.6 174 83.9
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 3.2e-12 76.3 49 83.7
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 3.2e-12 76.3 49 75.5
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 3.2e-12 76.3 49 79.6
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 5.5e-12 75.5 51 76.5
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 7.1e-12 75.1 56 73.2
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 9.3e-12 74.7 51 74.5
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 9.3e-12 74.7 47 76.6
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 9.3e-12 74.7 53 73.6
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 2.1e-11 73.6 51 72.5
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 4.6e-11 72.4 50 74.0
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 4.6e-11 72.4 53 71.7
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.6e-11 72.4 53 71.7
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.6e-11 72.4 49 81.6
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 4.6e-11 72.4 50 68.0
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 6.1e-11 72.0 33 97.0
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 6.1e-11 72.0 51 74.5
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 7.9e-11 71.6 45 73.3
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 7.9e-11 71.6 51 72.5
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 1.0e-10 71.2 46 78.3
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 1.3e-10 70.9 45 60.0
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 1.3e-10 70.9 51 72.5
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.3e-10 70.9 49 73.5
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 1.3e-10 70.9 49 73.5
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 1.8e-10 70.5 46 76.1
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 3.0e-10 69.7 50 72.0
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 3.0e-10 69.7 46 82.6
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 3.0e-10 69.7 47 72.3
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 3.9e-10 69.3 47 78.7
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.9e-10 69.3 42 81.0
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 3.9e-10 69.3 42 81.0
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.9e-10 69.3 46 76.1
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 5.1e-10 68.9 48 68.8
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 6.7e-10 68.6 43 76.7
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 6.7e-10 68.6 51 68.6
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 6.7e-10 68.6 50 74.0
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 8.7e-10 68.2 53 66.0
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 8.7e-10 68.2 45 77.8
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.1e-09 67.8 50 70.0
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.1e-09 67.8 50 70.0
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 1.1e-09 67.8 42 78.6
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 1.1e-09 67.8 50 70.0
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 1.5e-09 67.4 50 70.0
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 1.5e-09 67.4 46 73.9
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 1.9e-09 67.0 50 68.0
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.9e-09 67.0 50 70.0
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 1.9e-09 67.0 50 68.0
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 1.9e-09 67.0 50 68.0
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.9e-09 67.0 47 74.5
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 2.5e-09 66.6 50 68.0
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 2.5e-09 66.6 50 68.0
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 2.5e-09 66.6 50 68.0
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.5e-09 66.6 50 68.0
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 2.5e-09 66.6 45 75.6
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 2.5e-09 66.6 43 81.4
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 4.3e-09 65.9 50 66.0
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 4.3e-09 65.9 50 66.0
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 5.7e-09 65.5 48 70.8
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 7.4e-09 65.1 48 70.8
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 9.7e-09 64.7 48 70.8
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 9.7e-09 64.7 50 68.0
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.7e-08 62.8 53 64.2
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 6.3e-08 62.0 48 66.7
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 8.2e-08 61.6 53 60.4
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 1.1e-07 61.2 41 73.2
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 1.1e-07 61.2 53 60.4
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 6.9e-07 58.5 36 83.3
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 9.0e-07 58.2 35 80.0


User provided reference genes

Program Settings