Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2766 Fragaria x ananassa HOM05D004195 ORTHO05D005309 2.3e-63 245.4 120 100.0
FAN27G3503 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.5e-46 189.5 109 87.2
FAN15G2696 Fragaria x ananassa HOM05D004195 ORTHO05D005309 5.7e-46 187.6 109 87.2
FAN24G0605 Fragaria x ananassa HOM05D004195 ORTHO05D005309 9.7e-46 186.8 108 87.0
RcHm_v2.0_Chr6g0296821 Rosa chinensis HOM05D004195 ORTHO05D005309 1.7e-45 186.0 109 86.2
FAN20G1489 Fragaria x ananassa HOM05D004195 ORTHO05D005309 1.1e-44 183.3 109 85.3
Manes.18G083251 Manihot esculenta HOM05D004195 ORTHO05D005309 1.8e-39 166.0 109 73.4
Lj7C351T8 Lonicera japonica HOM05D004195 ORTHO05D005309 8.8e-39 163.7 111 68.5
Prupe.1G488700 Prunus persica HOM05D004195 ORTHO05D005309 2.0e-38 162.5 109 73.4
Cfa018421 Carpinus fangiana HOM05D004195 ORTHO05D005309 3.7e-37 158.3 109 69.7
Haze_17642 Corylus avellana HOM05D004195 ORTHO05D005309 3.7e-37 158.3 109 69.7
MD15G1133100 Malus domestica HOM05D004195 ORTHO05D005309 3.7e-37 158.3 109 69.7
CiPaw.15G030800 Carya illinoinensis HOM05D004195 ORTHO05D005309 4.8e-37 157.9 109 67.9
TWI34G0939 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 6.3e-37 157.5 109 67.9
AUR62007701 Chenopodium quinoa HOM05D004195 ORTHO05D005309 1.1e-36 156.8 110 64.5
CsaV3_6G034020 Cucumis sativus L. HOM05D004195 ORTHO05D005309 1.1e-36 156.8 109 66.1
Hund17352 Selenicereus undatus HOM05D004195 ORTHO05D005309 1.1e-36 156.8 109 67.0
MELO3C008467.2 Cucumis melo HOM05D004195 ORTHO05D005309 1.4e-36 156.4 109 66.1
Ciclev10000592m.g Citrus clementina HOM05D004195 ORTHO05D005309 1.8e-36 156.0 109 66.1
CSS0005980 Camellia sinensis var. sinensis HOM05D004195 ORTHO05D005309 2.4e-36 155.6 109 68.8
AUR62013440 Chenopodium quinoa HOM05D004195 ORTHO05D005309 2.4e-36 155.6 109 65.1
Thecc.08G133900 Theobroma cacao HOM05D004195 ORTHO05D005309 3.1e-36 155.2 109 63.3
VMungo1309G1545 Vigna mungo HOM05D004195 ORTHO05D005309 5.3e-36 154.5 109 67.0
Atru.chr13.1591 Acer truncatum HOM05D004195 ORTHO05D005309 9.1e-36 153.7 109 66.1
Actinidia15207 Actinidia chinensis HOM05D004195 ORTHO05D005309 9.1e-36 153.7 109 67.9
Sed0021205 Sechium edule HOM05D004195 ORTHO05D005309 9.1e-36 153.7 109 64.2
ClCG08G006050 Citrullus lanatus HOM05D004195 ORTHO05D005309 1.2e-35 153.3 110 67.3
Rhsim11G0072300 Rhododendron simsii HOM05D004195 ORTHO05D005309 2.6e-35 152.1 109 67.9
THA.LOC104808371 Tarenaya hassleriana HOM05D004195 ORTHO05D000001 2.6e-35 152.1 109 63.3
TWI60G0549 Tripterygium wilfordii HOM05D004195 ORTHO05D005309 2.6e-35 152.1 109 65.1
PSO724G0104 Papaver somniferum HOM05D004195 ORTHO05D005309 3.5e-35 151.8 108 63.9
Phvul.009G130500 Phaseolus vulgaris HOM05D004195 ORTHO05D005309 3.5e-35 151.8 109 66.1
Ah.04g163390 Amaranthus hybridus HOM05D004195 ORTHO05D005309 5.9e-35 151.0 109 64.2
Glyma.04G245100 Glycine max HOM05D004195 ORTHO05D005309 7.7e-35 150.6 109 66.1
PSO729G0087 Papaver somniferum HOM05D004195 ORTHO05D005309 7.7e-35 150.6 108 63.9
Potri.002G077400 Populus trichocarpa HOM05D004195 ORTHO05D005309 7.7e-35 150.6 111 64.9
Sabra02G0060800 Salix brachista HOM05D004195 ORTHO05D005309 7.7e-35 150.6 111 65.8
CiPaw.16G022400 Carya illinoinensis HOM05D004195 ORTHO05D005309 1.0e-34 150.2 109 64.2
AT5G52560 Arabidopsis thaliana HOM05D004195 ORTHO05D005309 1.3e-34 149.8 109 62.4
PSO541G1755 Papaver somniferum HOM05D004195 ORTHO05D005309 1.3e-34 149.8 108 63.0
TAR381G1357 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.3e-34 149.8 109 64.2
TAR625G0293 Trochodendron aralioides HOM05D004195 ORTHO05D005309 1.3e-34 149.8 108 63.9
CARHR265560 Cardamine hirsuta HOM05D004195 ORTHO05D005309 1.7e-34 149.4 109 62.4
Dinv27262 Davidia involucrata HOM05D004195 ORTHO05D005309 1.7e-34 149.4 109 65.1
Gorai.004G254500 Gossypium raimondii HOM05D004195 ORTHO05D005309 2.2e-34 149.1 109 63.3
GSVIVG01008799001 Vitis vinifera HOM05D004195 ORTHO05D005309 2.2e-34 149.1 109 66.1
Gohir.A08G221616 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.9e-34 148.7 109 62.4
Nn5g28450 Nelumbo nucifera HOM05D004195 ORTHO05D005309 2.9e-34 148.7 109 62.4
AL8G27030 Arabidopsis lyrata HOM05D004195 ORTHO05D005309 3.8e-34 148.3 109 61.5
Gorai.013G108400 Gossypium raimondii HOM05D004195 ORTHO05D005309 3.8e-34 148.3 109 64.2
DCAR_003592 Daucus carota HOM05D004195 ORTHO05D005309 5.0e-34 147.9 109 65.1
Peaxi162Scf00066g00527 Petunia axillaris HOM05D004195 ORTHO05D005309 5.0e-34 147.9 108 63.0
EL10Ac1g01366 Beta vulgaris HOM05D004195 ORTHO05D005309 6.5e-34 147.5 108 59.3
C08p38640 Brassica napus HOM05D004195 ORTHO05D005309 6.5e-34 147.5 109 63.3
Lalb_Chr23g0271201 Lupinus albus HOM05D004195 ORTHO05D005309 6.5e-34 147.5 109 63.3
Sp4g04790 Schrenkiella parvula HOM05D004195 ORTHO05D005309 6.5e-34 147.5 109 61.5
Sopen04g025940 Solanum pennellii HOM05D004195 ORTHO05D005309 6.5e-34 147.5 109 62.4
BcaC07g40866 Brassica carinata HOM05D004195 ORTHO05D005309 8.5e-34 147.1 109 62.4
BolC8t51435H Brassica oleracea HOM05D004195 ORTHO05D005309 8.5e-34 147.1 109 62.4
Cpa.g.sc64.151 Carica papaya HOM05D004195 ORTHO05D005309 8.5e-34 147.1 109 66.1
Actinidia21272 Actinidia chinensis HOM05D004195 ORTHO05D005309 1.1e-33 146.7 109 63.3
Carub.0008s1270 Capsella rubella HOM05D004195 ORTHO05D005309 1.1e-33 146.7 109 60.6
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.1e-33 146.7 109 63.3
PGSC0003DMG400023024 Solanum tuberosum HOM05D004195 ORTHO05D005309 1.1e-33 146.7 109 62.4
Duzib093G0036 Durio zibethinus HOM05D004195 ORTHO05D005309 1.4e-33 146.4 109 60.6
Gohir.D03G063000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.4e-33 146.4 109 63.3
Nitab4.5_0002557g0050 Nicotiana tabacum HOM05D004195 ORTHO05D005309 1.4e-33 146.4 109 62.4
A09p55650 Brassica napus HOM05D004195 ORTHO05D005309 1.9e-33 146.0 109 61.5
BraA09t40966Z Brassica rapa HOM05D004195 ORTHO05D005309 1.9e-33 146.0 109 61.5
CAN.G405.5 Capsicum annuum HOM05D004195 ORTHO05D005309 1.9e-33 146.0 109 63.3
Gohir.A02G111000 Gossypium hirsutum HOM05D004195 ORTHO05D005309 1.9e-33 146.0 108 63.0
PSO675G4690 Papaver somniferum HOM05D004195 ORTHO05D005309 1.9e-33 146.0 108 61.1
Aa31LG9G14170 Aethionema arabicum HOM05D004195 ORTHO05D005309 2.5e-33 145.6 108 63.0
Aqoxy6G00296 Aquilegia oxysepala HOM05D004195 ORTHO05D005309 2.5e-33 145.6 109 63.3
Solyc04g058070.3 Solanum lycopersicum HOM05D004195 ORTHO05D005309 2.5e-33 145.6 109 61.5
TPR.G6326 Trifolium pratense HOM05D004195 ORTHO05D005309 2.5e-33 145.6 109 62.4
Lj1g0006497 Lotus japonicus HOM05D004195 ORTHO05D005309 3.2e-33 145.2 109 62.4
Peaxi162Scf00946g00016 Petunia axillaris HOM05D004195 ORTHO05D005309 4.2e-33 144.8 109 61.5
Psat5g084360 Pisum sativum HOM05D004195 ORTHO05D005309 4.2e-33 144.8 109 64.2
ECA233G3807 Erigeron canadensis HOM05D004195 ORTHO05D005309 5.5e-33 144.4 109 61.5
Thhalv10000457m.g Eutrema salsugineum HOM05D004195 ORTHO05D005309 7.2e-33 144.1 109 60.6
Oeu045951.3 Olea europaea HOM05D004195 ORTHO05D005309 7.2e-33 144.1 109 61.5
PGR042G0897 Punica granatum HOM05D004195 ORTHO05D005309 7.2e-33 144.1 109 60.6
Migut.C01079 Erythranthe guttata HOM05D004195 ORTHO05D005309 9.4e-33 143.7 109 59.6
Manes.02G169300 Manihot esculenta HOM05D004195 ORTHO05D005309 9.4e-33 143.7 109 64.2
Oeu047171.1 Olea europaea HOM05D004195 ORTHO05D005309 9.4e-33 143.7 109 62.4
Eucgr.F03856 Eucalyptus grandis HOM05D004195 ORTHO05D005309 1.2e-32 143.3 116 59.5
BcaB08g35185 Brassica carinata HOM05D004195 ORTHO05D005309 1.6e-32 142.9 109 59.6
Lj4A674G55 Lonicera japonica HOM05D004195 ORTHO05D005309 1.6e-32 142.9 109 63.3
unitig_748.g7692 Utricularia gibba HOM05D004195 ORTHO05D005309 2.1e-32 142.5 109 60.6
MSTRG.25350 Avicennia marina HOM05D004195 ORTHO05D005309 2.7e-32 142.1 109 57.8
Medtr3g088650 Medicago truncatula HOM05D004195 ORTHO05D005309 2.7e-32 142.1 108 59.3
MSTRG.1402 Avicennia marina HOM05D004195 ORTHO05D005309 4.7e-32 141.4 122 54.9
Gohir.A05G238300 Gossypium hirsutum HOM05D004195 ORTHO05D005309 4.7e-32 141.4 109 60.6
HanXRQChr02g0055521 Helianthus annuus HOM05D004195 ORTHO05D005309 6.1e-32 141.0 109 59.6
FvH4_2g28000 Fragaria vesca HOM05D004195 ORTHO05D005309 1.4e-31 139.8 81 85.2
SalBow7G3728 Salvia bowleyana HOM05D004195 ORTHO05D005309 3.0e-31 138.7 109 59.6
Cc10_g13640 Coffea canephora HOM05D004195 ORTHO05D005309 3.9e-31 138.3 108 58.3
Zm00001eb272890 Zea mays HOM05D004195 ORTHO05D005309 3.9e-31 138.3 108 57.4
ECA238G0374 Erigeron canadensis HOM05D004195 ORTHO05D005309 6.7e-31 137.5 109 58.7
CDE07G0325 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 1.5e-30 136.3 109 59.6
HanXRQChr14g0452241 Helianthus annuus HOM05D004195 ORTHO05D005309 1.5e-30 136.3 109 57.8
SHI09238 Sapria himalayana HOM05D004195 ORTHO05D005309 1.5e-30 136.3 110 55.5
SGA_v2.0_scaffold7G03728 Striga asiatica HOM05D004195 ORTHO05D005309 7.4e-30 134.0 109 55.0
SEGI_41147 Sequoiadendron giganteum HOM05D004195 ORTHO05D005309 1.3e-29 133.3 109 57.8
HPP92_009336 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.2e-29 132.5 109 58.7
Lsat_1_v5_gn_2_99200 Lactuca sativa HOM05D004195 ORTHO05D005309 2.8e-29 132.1 110 55.5
Zm00001eb226930 Zea mays HOM05D004195 ORTHO05D005309 4.8e-29 131.3 108 55.6
Nitab4.5_0000317g0080 Nicotiana tabacum HOM05D004195 ORTHO05D005309 6.3e-29 131.0 101 61.4
CANSAT25G3797 Cannabis sativa HOM05D004195 ORTHO05D005309 8.2e-29 130.6 131 52.7
CDE06G0343 Ceratophyllum demersum HOM05D004195 ORTHO05D005309 8.2e-29 130.6 109 56.0
BcaB08g36106 Brassica carinata HOM05D004195 ORTHO05D005309 1.2e-27 126.7 109 56.0
Os06g0701200 Oryza sativa ssp. japonica HOM05D004195 ORTHO05D005309 1.6e-27 126.3 108 52.8
Sed0024885 Sechium edule HOM05D004195 ORTHO05D005309 1.6e-27 126.3 98 60.2
HPP92_005775 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.5e-27 125.2 111 55.0
HPP92_005816 Vanilla planifolia HOM05D004195 ORTHO05D005309 3.5e-27 125.2 111 55.0
ATR1001G002 Amborella trichopoda HOM05D004195 ORTHO05D005309 2.2e-26 122.5 108 55.6
AagrBONN_evm.TU.Sc2ySwM_228.475 Anthoceros agrestis HOM05D004195 ORTHO05D005309 3.6e-24 115.2 109 51.4
SMO144G0039 Selaginella moellendorffii HOM05D004195 ORTHO05D005309 1.0e-23 113.6 108 50.0
VMungo0720G0521 Vigna mungo HOM05D000196 ORTHO05D000279 1.4e-23 113.2 76 64.5
Pp3c14_26160 Physcomitrium patens HOM05D004195 ORTHO05D005309 3.0e-23 112.1 111 48.6
Ca_16614_v3 Cicer arietinum L. HOM05D004195 ORTHO05D005309 8.8e-23 110.5 70 70.0
arahy.Tifrunner.gnm1.ann1.8W34DS Arachis hypogaea HOM05D004195 ORTHO05D005309 1.5e-22 109.8 70 70.0
arahy.Tifrunner.gnm1.ann1.MX6LT2 Arachis hypogaea HOM05D004195 ORTHO05D005309 1.5e-22 109.8 70 70.0
arahy.Tifrunner.gnm1.ann1.TVXF2I Arachis hypogaea HOM05D004195 ORTHO05D005309 1.5e-22 109.8 70 70.0
Mapoly0020s0171 Marchantia polymorpha HOM05D004195 ORTHO05D005309 3.7e-21 105.1 110 45.5
Sc26g0002830 Simmondsia chinensis HOM05D004195 ORTHO05D005309 4.8e-21 104.8 79 58.2
Dinv14704 Davidia involucrata HOM05D004195 ORTHO05D005309 5.3e-20 101.3 109 52.3
Gohir.A10G100400 Gossypium hirsutum HOM05D004195 ORTHO05D005309 2.7e-19 99.0 75 54.7
HPP92_009371 Vanilla planifolia HOM05D004195 ORTHO05D005309 2.2e-18 95.9 69 62.3
SGA_v2.0_scaffold52G18908 Striga asiatica HOM05D004195 ORTHO05D005309 8.5e-18 94.0 70 57.1
Hma1.2p1_0349F.1_g132280 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 2.5e-17 92.4 58 69.0
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 6.1e-16 87.8 116 43.1
vmacro00869 Vaccinium macrocarpon HOM05D004195 ORTHO05D005309 8.0e-16 87.4 106 46.2
Gorai.005G087200 Gossypium raimondii HOM05D004195 ORTHO05D005309 3.7e-13 78.6 91 47.3
Gohir.D02G077650 Gossypium hirsutum HOM05D004195 ORTHO05D005309 6.3e-13 77.8 91 45.1
Hma1.2p1_2689F.1_g326990 Hydrangea macrophylla HOM05D004195 ORTHO05D005309 1.2e-11 73.6 58 60.3
Lsat_1_v5_gn_6_45121 Lactuca sativa HOM05D004195 ORTHO05D035846 3.8e-10 68.6 69 50.7
Lsat_1_v5_gn_6_43041 Lactuca sativa HOM05D004195 ORTHO05D035846 3.6e-08 62.0 35 68.6
Hund26745 Selenicereus undatus HOM05D004195 ORTHO05D005309 5.2e-07 58.2 55 56.4
Lj4C664G15 Lonicera japonica HOM05D004195 ORTHO05D005309 7.5e-06 54.3 51 52.9
Pp3c7_22840 Physcomitrium patens HOM05D004195 ORTHO05D005309 7.5e-06 54.3 63 39.7


User provided reference genes

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