Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 3797.3 1967 100.0
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 3719.9 1962 98.5
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 0.0e+00 3700.2 1962 98.1
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 0.0e+00 3628.2 2176 88.6
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 0.0e+00 3434.8 1969 91.4
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 0.0e+00 2885.5 1968 76.9
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 0.0e+00 2866.6 1969 76.7
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 0.0e+00 2445.2 1978 66.3
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 0.0e+00 2428.3 2059 63.4
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 0.0e+00 2406.7 1977 64.5
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 0.0e+00 2401.3 1979 63.8
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 0.0e+00 2377.4 1971 64.1
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 0.0e+00 2357.8 1986 63.2
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 0.0e+00 2302.7 1978 61.5
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 0.0e+00 2292.7 1972 62.6
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 0.0e+00 2279.6 1977 62.5
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 0.0e+00 2278.4 1977 61.2
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 2276.5 1986 61.2
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 0.0e+00 2263.8 2016 61.0
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 0.0e+00 2238.8 1993 60.3
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2231.4 1972 61.4
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 0.0e+00 2228.4 1977 60.3
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 0.0e+00 2191.0 2007 58.8
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 0.0e+00 2182.5 2073 57.3
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 0.0e+00 2132.5 1980 58.0
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 0.0e+00 2121.3 1986 58.1
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 0.0e+00 2098.2 1978 57.3
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 0.0e+00 2092.4 1995 57.8
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 0.0e+00 2087.0 1975 57.4
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 2085.1 1984 57.3
Gohir.A12G039200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 0.0e+00 2079.7 1791 62.3
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 0.0e+00 2068.1 1974 57.0
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 0.0e+00 2059.6 1971 55.7
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 0.0e+00 2041.5 1971 56.7
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 0.0e+00 2038.1 1969 55.7
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 2026.5 1974 55.7
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 2015.4 2058 53.9
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 0.0e+00 2014.6 1973 55.4
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 0.0e+00 1986.8 1974 54.9
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1982.6 1992 55.2
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 0.0e+00 1978.4 2043 54.3
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 0.0e+00 1973.4 1992 55.0
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 0.0e+00 1966.4 2057 53.1
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 0.0e+00 1948.7 1970 53.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 0.0e+00 1944.5 1980 53.8
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 0.0e+00 1941.8 1975 54.1
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 0.0e+00 1940.2 1976 53.5
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 0.0e+00 1939.1 1980 53.7
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 0.0e+00 1932.9 1976 53.7
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 0.0e+00 1932.5 1970 53.4
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 0.0e+00 1920.2 1974 53.5
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 0.0e+00 1897.9 2003 52.0
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1895.6 1980 52.9
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 0.0e+00 1894.4 1983 52.8
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 0.0e+00 1887.8 1980 53.1
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 0.0e+00 1886.3 1983 53.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 0.0e+00 1883.6 1987 51.6
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 0.0e+00 1872.8 1967 52.4
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 0.0e+00 1863.6 1969 51.9
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 0.0e+00 1857.0 1980 52.2
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 0.0e+00 1852.4 2022 51.4
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 0.0e+00 1842.0 1975 52.3
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 0.0e+00 1833.9 2095 49.5
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 0.0e+00 1824.7 1950 51.5
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 0.0e+00 1821.6 2020 50.8
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 0.0e+00 1818.1 1983 50.5
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 0.0e+00 1796.2 2018 50.0
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 0.0e+00 1794.2 2182 47.2
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 0.0e+00 1781.1 1974 50.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 0.0e+00 1758.8 1982 49.6
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 0.0e+00 1741.5 1992 50.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 0.0e+00 1734.5 1970 50.0
Eucgr.I01378 Eucalyptus grandis HOM05D004110 ORTHO05D004810 0.0e+00 1720.3 1742 54.4
Solyc11g039880.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 0.0e+00 1715.3 1826 51.2
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 0.0e+00 1573.9 1996 45.6
Duzib248G0147 Durio zibethinus HOM05D004110 ORTHO05D004810 0.0e+00 1527.7 1394 59.8
Cpa.g.sc37.187 Carica papaya HOM05D004110 ORTHO05D004810 0.0e+00 1497.6 1503 56.2
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 0.0e+00 1483.0 1978 45.2
Haze_02193 Corylus avellana HOM05D004110 ORTHO05D004810 0.0e+00 1427.2 1385 58.8
vmacro17377 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 0.0e+00 1363.2 1397 54.0
CSS0024884 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 0.0e+00 1308.9 1266 57.3
Oeu014463.1 Olea europaea HOM05D004110 ORTHO05D004810 0.0e+00 1265.0 2332 37.7
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 0.0e+00 1107.4 2017 36.1
AUR62010090 Chenopodium quinoa HOM05D004110 ORTHO05D004810 1.8e-298 1030.4 1236 47.7
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 8.4e-296 1021.5 2065 32.9
FAN27G1057 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.2e-287 993.0 515 100.0
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 6.4e-280 968.8 2065 32.9
CAN.G603.1 Capsicum annuum HOM05D004110 ORTHO05D004810 2.4e-274 950.3 1220 45.9
MELO3C020789.2 Cucumis melo HOM05D004110 ORTHO05D004810 2.6e-273 946.8 1022 52.7
MD10G1119400 Malus domestica HOM05D004110 ORTHO05D004810 4.9e-272 942.6 707 71.6
Nitab4.5_0006590g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.3e-259 901.4 1097 46.9
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 8.8e-253 878.6 2075 30.2
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 7.7e-249 865.5 781 57.6
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 9.1e-242 842.0 656 67.5
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.6e-238 830.1 585 70.9
ClCG02G011600 Citrullus lanatus HOM05D004110 ORTHO05D004810 6.8e-221 772.7 752 57.6
Zm00001eb026650 Zea mays HOM05D004110 ORTHO05D004810 2.9e-216 757.3 1330 37.1
CARHR294450 Cardamine hirsuta HOM05D004110 ORTHO05D004810 5.2e-205 719.9 738 52.8
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.6e-193 681.8 1476 31.2
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 2.3e-189 667.9 839 44.0
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 8.9e-189 666.0 475 71.8
CAN.G603.2 Capsicum annuum HOM05D004110 ORTHO05D004810 3.5e-169 600.9 733 47.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 5.1e-168 597.0 707 46.3
MD10G1119600 Malus domestica HOM05D004110 ORTHO05D004810 1.8e-160 572.0 390 77.4
Potri.004G168700 Populus trichocarpa HOM05D004110 ORTHO05D004810 1.6e-158 565.5 796 47.2
COL.COLO4_17262 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.8e-141 508.8 773 42.2
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 9.7e-135 486.5 2179 23.7
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 3.1e-133 481.5 500 53.2
Glyma.11G098600 Glycine max HOM05D004110 ORTHO05D004810 1.7e-131 475.7 421 61.0
Glyma.11G098551 Glycine max HOM05D004110 ORTHO05D004810 1.0e-123 449.9 336 67.3
SHI05701 Sapria himalayana HOM05D004110 ORTHO05D004810 5.5e-114 417.5 605 42.8
SEGI_22669 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 2.7e-108 398.7 743 37.1
Os10g0154600 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 9.8e-103 380.2 664 37.0
HPP92_005015 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.5e-87 329.7 632 34.3
MD10G1119500 Malus domestica HOM05D004110 ORTHO05D004810 9.8e-79 300.4 206 74.8
CSS0003289 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.7e-78 299.7 201 71.1
ClCG02G011580 Citrullus lanatus HOM05D004110 ORTHO05D004810 2.4e-77 295.8 215 67.9
FAN27G2584 Fragaria x ananassa HOM05D004110 ORTHO05D004810 8.9e-72 277.3 142 97.9
Duzib248G1214 Durio zibethinus HOM05D004110 ORTHO05D004810 5.6e-58 231.5 190 64.2
SMO171G0108 Selaginella moellendorffii HOM05D004110 ORTHO05D004810 2.1e-57 229.6 477 31.0
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 8.4e-46 191.0 127 75.6
COL.COLO4_17261 Corchorus olitorius HOM05D004110 ORTHO05D004810 3.0e-43 182.6 339 37.8
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 4.8e-41 175.3 583 28.8
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.3e-38 167.2 143 55.9
SEGI_07180 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.7e-38 166.8 397 31.5
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.9e-37 163.3 134 60.4
CSS0015162 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.2e-36 160.6 100 80.0
Lj3g0004699 Lotus japonicus HOM05D004110 ORTHO05D004810 5.9e-31 141.7 182 45.1
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 1.2e-28 134.0 143 53.8
MCO14G095 Micromonas commoda HOM05D004110 ORTHO05D004810 1.1e-26 127.5 487 26.5
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 1.9e-26 126.7 90 65.6
ClCG02G011590 Citrullus lanatus HOM05D004110 ORTHO05D004810 9.7e-26 124.4 93 62.4
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 2.8e-25 122.9 89 65.2
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.7e-25 122.5 95 63.2
HPP92_005007 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.4e-24 120.6 301 29.9
SHI05700 Sapria himalayana HOM05D004110 ORTHO05D004810 3.1e-24 119.4 124 49.2
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 1.9e-21 110.2 122 44.3
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 5.5e-21 108.6 125 44.8
AUR62040642 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.1e-20 106.7 115 48.7
SHI05699 Sapria himalayana HOM05D004110 ORTHO05D004810 6.1e-20 105.1 166 37.3
TPR.G40846 Trifolium pratense HOM05D004110 ORTHO05D004810 1.8e-19 103.6 110 50.9
Ciclev10029869m.g Citrus clementina HOM05D004110 ORTHO05D004810 5.7e-18 98.6 137 43.1
BolC8t52466H Brassica oleracea HOM05D004110 ORTHO05D004810 1.1e-16 94.4 86 54.7
CSS0014003 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 1.1e-16 94.4 91 56.0
FAN24G1876 Fragaria x ananassa HOM05D000827 ORTHO05D001318 9.1e-16 91.3 66 72.7
Psat1g093160 Pisum sativum HOM05D004110 ORTHO05D004810 3.4e-15 89.4 71 57.7
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 7.7e-15 88.2 147 34.7
PGSC0003DMG400022052 Solanum tuberosum HOM05D004110 ORTHO05D004810 1.3e-14 87.4 65 67.7
BcaB03g12223 Brassica carinata HOM05D004110 ORTHO05D004810 1.1e-13 84.3 113 47.8
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 7.2e-13 81.6 163 35.0
HanXRQChr09g0252681 Helianthus annuus HOM05D004110 ORTHO05D004810 1.8e-11 77.0 52 63.5
SHI05692 Sapria himalayana HOM05D004110 ORTHO05D004810 3.9e-11 75.9 69 53.6
SEGI_16576 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 3.9e-11 75.9 193 28.5
Psat5g216640 Pisum sativum HOM05D000564 ORTHO05D015028 2.2e-09 70.1 142 34.5
VMungo0464G1786 Vigna mungo HOM05D004110 ORTHO05D004810 2.8e-09 69.7 89 41.6
SHI05698 Sapria himalayana HOM05D004110 ORTHO05D004810 6.3e-09 68.6 85 48.2
Sabra04G0113100 Salix brachista HOM05D004110 ORTHO05D004810 2.0e-07 63.5 106 39.6
CBR_g66117 Chara braunii HOM05D000019 ORTHO05D001702 2.6e-07 63.2 105 32.4
Glyma.19G036450 Glycine max HOM05D004110 ORTHO05D004810 1.0e-06 61.2 66 47.0
Psat6g113120 Pisum sativum HOM05D020801 ORTHO05D004810 2.2e-06 60.1 52 51.9
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 3.8e-06 59.3 43 58.1
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 3.8e-06 59.3 59 50.8
SHI05695 Sapria himalayana HOM05D004110 ORTHO05D004810 3.8e-06 59.3 97 45.4


User provided reference genes

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