Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2487 Fragaria x ananassa HOM05D004753 ORTHO05D005920 9.1e-185 650.2 352 100.0
FAN27G0535 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.3e-183 646.4 352 99.1
FAN20G2170 Fragaria x ananassa HOM05D004753 ORTHO05D005920 1.8e-180 636.0 323 98.5
FvH4_2g25700 Fragaria vesca HOM05D004753 ORTHO05D005920 8.2e-178 627.1 352 97.7
FAN24G0086 Fragaria x ananassa HOM05D004753 ORTHO05D005920 5.3e-177 624.4 352 97.2
RcHm_v2.0_Chr6g0293981 Rosa chinensis HOM05D004753 ORTHO05D005920 3.0e-172 608.6 327 94.2
MD03G1288000 Malus domestica HOM05D004753 ORTHO05D005920 7.5e-139 497.7 326 77.0
MD11G1310300 Malus domestica HOM05D004753 ORTHO05D005920 2.2e-138 496.1 326 76.4
CiPaw.14G100000 Carya illinoinensis HOM05D004753 ORTHO05D005920 1.1e-137 493.8 326 76.7
Haze_04935 Corylus avellana HOM05D004753 ORTHO05D005920 5.0e-135 485.0 326 74.5
Haze_24929 Corylus avellana HOM05D004753 ORTHO05D005920 1.5e-134 483.4 326 74.2
QL12p028506 Quercus lobata HOM05D004753 ORTHO05D005920 1.6e-133 479.9 326 74.5
QL09p032163 Quercus lobata HOM05D004753 ORTHO05D005920 3.1e-132 475.7 326 73.9
CANSAT54G1658 Cannabis sativa HOM05D004753 ORTHO05D005920 5.2e-132 474.9 316 75.0
ClCG10G010920 Citrullus lanatus HOM05D004753 ORTHO05D005920 1.2e-131 473.8 320 74.4
MELO3C017956.2 Cucumis melo HOM05D004753 ORTHO05D005920 1.2e-131 473.8 325 73.2
PGR044G2668 Punica granatum HOM05D004753 ORTHO05D005920 1.2e-131 473.8 326 73.6
Sabra14G0096300 Salix brachista HOM05D004753 ORTHO05D005920 1.5e-131 473.4 330 73.9
Potri.014G129700 Populus trichocarpa HOM05D004753 ORTHO05D005920 3.4e-131 472.2 319 74.9
CsaV3_4G000800 Cucumis sativus L. HOM05D004753 ORTHO05D005920 4.4e-131 471.9 325 72.9
Sed0000474 Sechium edule HOM05D004753 ORTHO05D005920 7.5e-131 471.1 319 73.4
Potri.002G204900 Populus trichocarpa HOM05D004753 ORTHO05D005920 2.2e-130 469.5 331 72.5
Eucgr.K03479 Eucalyptus grandis HOM05D004753 ORTHO05D005920 4.9e-130 468.4 329 72.6
Ciclev10023300m.g Citrus clementina HOM05D004753 ORTHO05D005920 1.4e-129 466.8 321 73.8
Duzib133G0229 Durio zibethinus HOM05D004753 ORTHO05D005920 1.4e-129 466.8 323 74.9
Gorai.004G142400 Gossypium raimondii HOM05D004753 ORTHO05D005920 1.4e-129 466.8 329 73.9
Sabra02G0154600 Salix brachista HOM05D004753 ORTHO05D005920 1.4e-129 466.8 322 72.7
Thecc.01G300100 Theobroma cacao HOM05D004753 ORTHO05D005920 1.4e-129 466.8 333 73.6
CSS0011058 Camellia sinensis var. sinensis HOM05D004753 ORTHO05D005920 2.4e-129 466.1 314 74.2
Gohir.D08G138800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.4e-129 466.1 329 74.2
Duzib138G1754 Durio zibethinus HOM05D004753 ORTHO05D005920 3.2e-129 465.7 328 73.8
vmacro15009 Vaccinium macrocarpon HOM05D004753 ORTHO05D005920 9.2e-129 464.2 318 73.6
Cc09_g07750 Coffea canephora HOM05D004753 ORTHO05D005920 2.7e-128 462.6 320 73.4
Oeu046682.2 Olea europaea HOM05D004753 ORTHO05D005920 2.7e-128 462.6 330 73.0
Cpa.g.sc16.169 Carica papaya HOM05D004753 ORTHO05D005920 3.5e-128 462.2 319 73.4
THA.LOC104818291 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 3.5e-128 462.2 324 72.8
Manes.01G218800 Manihot esculenta HOM05D004753 ORTHO05D005920 1.0e-127 460.7 325 72.3
COL.COLO4_23348 Corchorus olitorius HOM05D004753 ORTHO05D005920 1.3e-127 460.3 337 72.1
GSVIVG01028012001 Vitis vinifera HOM05D004753 ORTHO05D005920 3.0e-127 459.1 335 70.7
Peaxi162Scf01084g00120 Petunia axillaris HOM05D004753 ORTHO05D005920 3.9e-127 458.8 325 71.1
SGA_v2.0_scaffold2G01394 Striga asiatica HOM05D004753 ORTHO05D005920 5.1e-127 458.4 321 72.6
ECA238G0492 Erigeron canadensis HOM05D004753 ORTHO05D005920 6.6e-127 458.0 327 72.5
Lsat_1_v5_gn_4_87281 Lactuca sativa HOM05D004753 ORTHO05D005920 8.6e-127 457.6 324 71.3
Rhsim01G0243400 Rhododendron simsii HOM05D004753 ORTHO05D005920 8.6e-127 457.6 368 66.3
MSTRG.18152 Avicennia marina HOM05D004753 ORTHO05D005920 1.1e-126 457.2 330 72.1
Oeu011458.1 Olea europaea HOM05D004753 ORTHO05D005920 1.1e-126 457.2 315 74.6
Atru.chr5.901 Acer truncatum HOM05D004753 ORTHO05D005920 1.5e-126 456.8 326 71.8
TAR636G3371 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.9e-126 456.4 324 71.3
TWI59G0801 Tripterygium wilfordii HOM05D004753 ORTHO05D005920 3.3e-126 455.7 329 70.5
Gohir.A08G117800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.6e-126 454.9 322 73.0
Nn3g21484 Nelumbo nucifera HOM05D004753 ORTHO05D005920 7.3e-126 454.5 315 73.0
MBI18_g06877_MAGBIO Magnolia biondii HOM05D004753 ORTHO05D005920 8.1e-125 451.1 328 69.5
SalBow3G1002 Salvia bowleyana HOM05D004753 ORTHO05D005920 1.8e-124 449.9 321 71.0
CARHR275530 Cardamine hirsuta HOM05D004753 ORTHO05D005920 3.1e-124 449.1 325 70.2
Lj2A1194G52 Lonicera japonica HOM05D004753 ORTHO05D005920 4.0e-124 448.7 317 72.2
Thhalv10004503m.g Eutrema salsugineum HOM05D004753 ORTHO05D005920 5.2e-124 448.4 328 69.8
Sp2g24970 Schrenkiella parvula HOM05D004753 ORTHO05D005920 5.2e-124 448.4 326 70.2
Aqoxy2G02947 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 8.9e-124 447.6 327 69.4
DCAR_012396 Daucus carota HOM05D004753 ORTHO05D005920 3.4e-123 445.7 321 70.1
HanXRQChr08g0207921 Helianthus annuus HOM05D004753 ORTHO05D005920 5.8e-123 444.9 310 72.9
Carub.0008s2246 Capsella rubella HOM05D004753 ORTHO05D005920 1.7e-122 443.4 321 70.4
AL8G38530 Arabidopsis lyrata HOM05D004753 ORTHO05D005920 2.2e-122 443.0 323 69.7
PGSC0003DMG401027528 Solanum tuberosum HOM05D004753 ORTHO05D005920 2.2e-122 443.0 327 70.0
Nitab4.5_0002687g0080 Nicotiana tabacum HOM05D004753 ORTHO05D005920 3.7e-122 442.2 325 68.9
arahy.Tifrunner.gnm1.ann1.89EUFG Arachis hypogaea HOM05D004753 ORTHO05D005920 1.4e-121 440.3 323 71.8
AT5G61770 Arabidopsis thaliana HOM05D004753 ORTHO05D005920 2.4e-121 439.5 323 69.3
SGA_v2.0_scaffold1G00368 Striga asiatica HOM05D004753 ORTHO05D005920 2.4e-121 439.5 362 64.9
BcaC01g02428 Brassica carinata HOM05D004753 ORTHO05D005920 7.1e-121 438.0 328 67.4
A06p28420 Brassica napus HOM05D004753 ORTHO05D005920 7.1e-121 438.0 328 67.4
C03p65390 Brassica napus HOM05D004753 ORTHO05D005920 7.1e-121 438.0 328 67.4
BolC3t18792H Brassica oleracea HOM05D004753 ORTHO05D005920 7.1e-121 438.0 328 67.4
BraA06t25786Z Brassica rapa HOM05D004753 ORTHO05D005920 7.1e-121 438.0 328 67.4
arahy.Tifrunner.gnm1.ann1.B7L3V1 Arachis hypogaea HOM05D004753 ORTHO05D005920 9.2e-121 437.6 323 71.5
BcaC04g23436 Brassica carinata HOM05D004753 ORTHO05D005920 1.6e-120 436.8 335 67.8
C09p08350 Brassica napus HOM05D004753 ORTHO05D005920 1.6e-120 436.8 335 67.8
BolC9t53745H Brassica oleracea HOM05D004753 ORTHO05D005920 1.6e-120 436.8 335 67.8
Nitab4.5_0008999g0010 Nicotiana tabacum HOM05D004753 ORTHO05D005920 1.6e-120 436.8 307 71.0
BraA09t36398Z Brassica rapa HOM05D004753 ORTHO05D005920 2.7e-120 436.0 335 67.2
Glyma.12G026700 Glycine max HOM05D004753 ORTHO05D005920 6.0e-120 434.9 318 70.8
Sc17g0002740 Simmondsia chinensis HOM05D004753 ORTHO05D005920 6.0e-120 434.9 318 70.1
A09p07440 Brassica napus HOM05D004753 ORTHO05D005920 3.0e-119 432.6 335 66.9
Lalb_Chr01g0001441 Lupinus albus HOM05D004753 ORTHO05D005920 6.6e-119 431.4 303 72.9
Phvul.011G029700 Phaseolus vulgaris HOM05D004753 ORTHO05D005920 6.6e-119 431.4 321 70.1
Lj3g0027269 Lotus japonicus HOM05D004753 ORTHO05D005920 8.6e-119 431.0 307 71.3
VMungo1127G1640 Vigna mungo HOM05D004753 ORTHO05D005920 8.6e-119 431.0 318 70.4
CAN.G134.43 Capsicum annuum HOM05D004753 ORTHO05D005920 1.9e-118 429.9 323 68.7
Ca_19020_v3 Cicer arietinum L. HOM05D004753 ORTHO05D005920 2.5e-118 429.5 322 68.3
HPP92_002997 Vanilla planifolia HOM05D004753 ORTHO05D005920 2.5e-118 429.5 325 68.0
Hund05425 Selenicereus undatus HOM05D004753 ORTHO05D005920 3.3e-118 429.1 329 69.6
BcaB02g09600 Brassica carinata HOM05D004753 ORTHO05D005920 5.6e-118 428.3 322 67.4
Glyma.11G100700 Glycine max HOM05D004753 ORTHO05D005920 7.3e-118 427.9 318 69.2
Actinidia15830 Actinidia chinensis HOM05D004753 ORTHO05D005920 9.6e-118 427.6 320 70.0
Solyc01g096800.3 Solanum lycopersicum HOM05D004753 ORTHO05D005920 9.6e-118 427.6 327 67.9
Sopen01g040500 Solanum pennellii HOM05D004753 ORTHO05D005920 1.6e-117 426.8 327 67.9
Aa31LG11G1720 Aethionema arabicum HOM05D004753 ORTHO05D005920 2.1e-117 426.4 333 67.0
ATR0584G246 Amborella trichopoda HOM05D004753 ORTHO05D005920 4.7e-117 425.2 306 69.0
AUR62008626 Chenopodium quinoa HOM05D004753 ORTHO05D005920 4.0e-116 422.2 312 68.3
BcaNung01420 Brassica carinata HOM05D004753 ORTHO05D005920 5.2e-116 421.8 344 65.4
TPR.G32348 Trifolium pratense HOM05D004753 ORTHO05D005920 1.2e-115 420.6 322 68.9
PSO832G3876 Papaver somniferum HOM05D004753 ORTHO05D005920 2.9e-114 416.0 326 66.6
PSO017G3074 Papaver somniferum HOM05D004753 ORTHO05D005920 4.9e-114 415.2 326 65.3
PSO170G0569 Papaver somniferum HOM05D004753 ORTHO05D005920 4.9e-114 415.2 323 65.3
HanXRQChr12g0368811 Helianthus annuus HOM05D004753 ORTHO05D005920 7.1e-113 411.4 312 67.6
PSO210G3006 Papaver somniferum HOM05D004753 ORTHO05D005920 3.5e-112 409.1 323 65.3
Ah.08g213470 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.6e-107 392.9 328 65.5
Dinv37873 Davidia involucrata HOM05D004753 ORTHO05D005920 1.7e-106 390.2 269 73.6
AUR62033145 Chenopodium quinoa HOM05D004753 ORTHO05D005920 9.3e-105 384.4 312 63.8
unitig_26.g10170 Utricularia gibba HOM05D004753 ORTHO05D005920 2.3e-103 379.8 272 71.3
Ah.15g093220 Amaranthus hybridus HOM05D004753 ORTHO05D005920 2.5e-102 376.3 305 66.2
Prupe.8G261200 Prunus persica HOM05D004753 ORTHO05D005920 6.9e-100 368.2 236 76.3
Os03g0343700 Oryza sativa ssp. japonica HOM05D004753 ORTHO05D005920 4.5e-99 365.5 317 59.6
TAR365G0243 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.2e-96 357.5 236 74.2
Zm00001eb016460 Zea mays HOM05D004753 ORTHO05D005920 1.1e-94 350.9 293 60.8
Actinidia01484 Actinidia chinensis HOM05D004753 ORTHO05D005920 2.1e-93 346.7 281 65.8
Gorai.002G117300 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.7e-93 345.9 320 59.7
Pp3c2_30030 Physcomitrium patens HOM05D004753 ORTHO05D005920 8.1e-93 344.7 320 55.6
CDE09G1083 Ceratophyllum demersum HOM05D004753 ORTHO05D005920 4.0e-92 342.4 268 67.9
Medtr4g075050 Medicago truncatula HOM05D004753 ORTHO05D005920 6.9e-92 341.7 324 57.7
SMO331G0088 Selaginella moellendorffii HOM05D004753 ORTHO05D005920 4.5e-91 339.0 289 58.1
Psat7g177400 Pisum sativum HOM05D004753 ORTHO05D005920 1.1e-89 334.3 241 71.0
AagrBONN_evm.TU.Sc2ySwM_362.2675 Anthoceros agrestis HOM05D004753 ORTHO05D005920 6.7e-87 325.1 304 53.9
Mapoly0097s0041 Marchantia polymorpha HOM05D004753 ORTHO05D005920 1.5e-86 323.9 312 53.2
Aqoxy311s002 Aquilegia oxysepala HOM05D004753 ORTHO05D005920 3.1e-84 316.2 237 67.9
CBR_g227 Chara braunii HOM05D004753 ORTHO05D005920 9.7e-78 294.7 257 59.1
Actinidia32213 Actinidia chinensis HOM05D004753 ORTHO05D005920 3.0e-71 273.1 242 59.9
MCO08G191 Micromonas commoda HOM05D004753 ORTHO05D005920 1.7e-69 267.3 293 45.1
Cre10.g450879 Chlamydomonas reinhardtii HOM05D004753 ORTHO05D005920 8.2e-69 265.0 279 46.6
Sed0023746 Sechium edule HOM05D004753 ORTHO05D005920 1.4e-63 247.7 326 46.9
Gorai.012G092400 Gossypium raimondii HOM05D004753 ORTHO05D005920 2.0e-62 243.8 176 71.0
THA.LOC104801723 Tarenaya hassleriana HOM05D004753 ORTHO05D005920 2.0e-59 233.8 155 74.2
AUR62033152 Chenopodium quinoa HOM05D004753 ORTHO05D005920 7.5e-46 188.7 163 60.1
PRCOL_00006477 Prasinoderma coloniale HOM05D004753 ORTHO05D005920 2.0e-43 180.6 236 41.1
Migut.B01152 Erythranthe guttata HOM05D004753 ORTHO05D005920 1.5e-41 174.5 117 75.2
Cfa026076 Carpinus fangiana HOM05D004753 ORTHO05D005920 4.2e-41 172.9 373 32.4
Haze_27315 Corylus avellana HOM05D004753 ORTHO05D005920 1.8e-39 167.5 293 37.2
MD08G1232400 Malus domestica HOM05D004753 ORTHO05D005920 6.1e-32 142.5 111 66.7
arahy.Tifrunner.gnm1.ann1.81M7HI Arachis hypogaea HOM05D004753 ORTHO05D005920 2.3e-31 140.6 102 73.5
arahy.Tifrunner.gnm1.ann1.JRXS1U Arachis hypogaea HOM05D004753 ORTHO05D005920 6.8e-31 139.0 100 74.0
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.0e-30 137.5 92 72.8
Gohir.D11G077800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 2.6e-30 137.1 196 43.9
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 5.7e-30 136.0 92 71.7
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 5.7e-30 136.0 92 71.7
Actinidia16175 Actinidia chinensis HOM05D004753 ORTHO05D005920 1.8e-28 131.0 133 54.9
Gorai.007G256100 Gossypium raimondii HOM05D004753 ORTHO05D005920 3.5e-19 100.1 64 76.6
Migut.D00217 Erythranthe guttata HOM05D004753 ORTHO05D005920 4.0e-15 86.7 67 65.7
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 2.0e-14 84.3 56 71.4
Hma1.2p1_1471F.1_g285675 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.9e-12 77.8 48 72.9
Hma1.2p1_1471F.1_g285690 Hydrangea macrophylla HOM05D004753 ORTHO05D005920 1.9e-12 77.8 48 72.9
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.9e-12 77.8 58 63.8
CANSAT21G1846 Cannabis sativa HOM05D000521 ORTHO05D000384 5.4e-12 76.3 50 70.0
PGSC0003DMG400004411 Solanum tuberosum HOM05D004753 ORTHO05D005920 1.9e-09 67.8 58 56.9


User provided reference genes

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