Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 2.0e-156 555.8 303 100.0
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.5e-140 503.1 302 92.4
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 4.2e-138 495.0 302 92.1
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 1.8e-128 463.0 305 86.6
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 4.9e-86 322.0 301 60.1
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 2.0e-84 316.6 304 60.5
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.4e-80 303.9 208 87.5
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 2.3e-67 260.0 301 52.5
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 2.5e-66 256.5 305 55.1
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 2.1e-65 253.4 295 49.8
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 6.2e-65 251.9 300 52.0
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 2.6e-63 246.5 306 50.0
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 2.4e-61 240.0 302 47.7
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 2.7e-60 236.5 296 47.3
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 1.7e-59 233.8 295 47.1
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 1.7e-59 233.8 310 47.7
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 1.7e-59 233.8 303 47.9
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 6.6e-59 231.9 304 48.7
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.5e-58 230.7 293 47.8
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 1.9e-58 230.3 293 47.8
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 7.3e-58 228.4 312 51.3
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 2.8e-57 226.5 295 48.1
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 2.8e-57 226.5 308 51.3
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 3.6e-57 226.1 304 52.0
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 6.2e-57 225.3 305 51.1
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 1.4e-56 224.2 303 46.2
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 2.4e-56 223.4 303 48.2
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 7.6e-55 218.4 289 45.7
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 7.6e-55 218.4 310 51.6
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 9.9e-55 218.0 211 57.8
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 1.7e-54 217.2 315 46.7
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 6.4e-54 215.3 297 49.8
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 1.4e-53 214.2 195 59.0
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 1.9e-53 213.8 269 46.5
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 2.4e-53 213.4 238 58.8
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 3.2e-53 213.0 307 44.3
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 3.2e-53 213.0 273 51.3
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 9.3e-53 211.5 360 41.1
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 2.7e-52 209.9 272 52.6
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 2.7e-52 209.9 296 52.0
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 3.5e-52 209.5 287 47.4
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 4.6e-52 209.1 231 51.1
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 6.0e-52 208.8 308 45.5
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 1.0e-51 208.0 302 42.7
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 1.3e-51 207.6 231 51.1
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 3.9e-51 206.1 296 44.6
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 6.6e-51 205.3 305 45.2
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 1.1e-50 204.5 241 51.9
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 1.5e-50 204.1 295 46.4
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 2.5e-50 203.4 213 54.0
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 9.6e-50 201.4 231 49.8
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.3e-49 201.1 247 51.4
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 1.6e-49 200.7 294 46.9
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 1.6e-49 200.7 284 44.0
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 2.8e-49 199.9 315 44.8
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 2.8e-49 199.9 295 43.4
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 3.6e-49 199.5 233 48.9
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 4.8e-49 199.1 289 47.4
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 4.8e-49 199.1 287 47.4
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 8.1e-49 198.4 213 52.1
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 1.4e-48 197.6 242 50.0
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 2.4e-48 196.8 303 43.9
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 4.0e-48 196.1 205 53.7
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 1.2e-47 194.5 289 43.6
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.0e-47 193.7 220 50.9
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 3.4e-47 193.0 242 47.5
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 4.5e-47 192.6 298 41.9
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 5.8e-47 192.2 298 41.9
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 5.8e-47 192.2 259 43.6
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 9.9e-47 191.4 235 54.9
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 2.2e-46 190.3 307 41.7
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 2.2e-46 190.3 267 47.9
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 4.9e-46 189.1 224 50.9
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 4.9e-46 189.1 379 37.5
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 8.4e-46 188.3 282 43.6
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 3.2e-45 186.4 224 51.3
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 4.2e-45 186.0 216 53.2
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 2.7e-44 183.3 260 43.5
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 6.0e-44 182.2 304 40.5
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 6.0e-44 182.2 304 44.4
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 1.0e-43 181.4 269 42.0
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 2.3e-43 180.3 308 40.9
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 1.1e-42 177.9 278 40.6
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 4.3e-42 176.0 277 40.8
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 7.4e-42 175.3 307 42.7
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 1.4e-40 171.0 313 38.7
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 5.3e-40 169.1 201 46.8
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 2.6e-39 166.8 252 44.0
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 3.4e-39 166.4 189 58.7
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 5.8e-39 165.6 203 44.8
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 5.8e-39 165.6 335 37.6
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.3e-38 164.5 302 44.0
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 2.2e-38 163.7 195 52.8
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 1.9e-37 160.6 237 41.8
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 7.9e-36 155.2 251 41.4
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 3.3e-34 149.8 349 33.5
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 9.6e-34 148.3 197 44.7
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 1.3e-33 147.9 182 53.3
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.5e-31 141.0 285 36.5
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 1.2e-23 114.8 203 40.9
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 6.5e-22 109.0 171 40.4
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 8.5e-22 108.6 220 39.1
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.6e-20 103.2 147 53.7
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 6.1e-20 102.4 252 32.1
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 1.8e-19 100.9 142 47.9
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 2.0e-15 87.4 130 47.7
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 2.2e-14 84.0 141 36.9
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.9e-13 80.9 121 50.4
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.7e-12 77.0 79 50.6
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.0e-11 75.1 70 55.7
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 1.4e-11 74.7 109 40.4
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 4.4e-10 69.7 92 57.6
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 4.4e-10 69.7 108 42.6
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.7e-09 67.8 56 58.9
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 3.7e-09 66.6 113 41.6
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 1.0e-06 58.5 45 57.8
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 2.9e-06 57.0 100 33.0


User provided reference genes

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