Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G2209 Fragaria x ananassa HOM05D008633 ORTHO05D202467 8.3e-108 393.7 192 100.0
FAN24G2402 Fragaria x ananassa HOM05D008633 ORTHO05D204449 2.6e-45 186.0 201 52.7
FvH4_6g31070 Fragaria vesca HOM05D008633 ORTHO05D017951 7.2e-27 124.8 86 75.6
FAN15G3172 Fragaria x ananassa HOM05D008633 ORTHO05D011158 9.8e-24 114.4 138 50.0
FAN14G4620 Fragaria x ananassa HOM05D008633 ORTHO05D017951 6.3e-23 111.7 81 71.6
FAN12G0974 Fragaria x ananassa HOM05D008633 ORTHO05D017951 8.3e-23 111.3 70 78.6
FAN12G2054 Fragaria x ananassa HOM05D008633 ORTHO05D017951 8.3e-23 111.3 70 78.6
FvH4_6g39960 Fragaria vesca HOM05D008633 ORTHO05D045938 7.0e-22 108.2 61 86.9
FAN14G5716 Fragaria x ananassa HOM05D008633 ORTHO05D045938 9.1e-22 107.8 60 88.3
FAN18G2888 Fragaria x ananassa HOM05D008633 ORTHO05D017951 7.7e-21 104.8 81 69.1
FAN04G0347 Fragaria x ananassa HOM05D008633 ORTHO05D017951 2.9e-20 102.8 62 80.6
FvH4_5g24170 Fragaria vesca HOM05D002288 ORTHO05D029429 1.9e-19 100.1 70 74.3
FvH4_3g43970 Fragaria vesca HOM05D008485 ORTHO05D009647 3.3e-19 99.4 70 72.9
FAN15G3228 Fragaria x ananassa HOM05D008633 ORTHO05D198917 4.2e-19 99.0 62 82.3
FAN19G0363 Fragaria x ananassa HOM05D008633 ORTHO05D011158 9.5e-19 97.8 184 41.3
FAN13G1772 Fragaria x ananassa HOM05D008633 ORTHO05D017951 5.2e-17 92.0 66 69.7
FAN21G0585 Fragaria x ananassa HOM05D008633 ORTHO05D017951 2.0e-16 90.1 61 73.8
FAN14G3023 Fragaria x ananassa HOM05D002288 ORTHO05D029429 1.3e-15 87.4 54 79.6
FAN21G3573 Fragaria x ananassa HOM05D007608 ORTHO05D009451 1.6e-13 80.5 55 72.7
FAN07G0426 Fragaria x ananassa HOM05D008633 ORTHO05D200904 3.5e-13 79.3 41 90.2
FAN24G1694 Fragaria x ananassa HOM05D008633 ORTHO05D019156 3.5e-13 79.3 65 61.5
FAN20G3110 Fragaria x ananassa HOM05D008633 ORTHO05D011158 5.9e-13 78.6 46 78.3
FvH4_7g14550 Fragaria vesca HOM05D008633 ORTHO05D019156 1.0e-12 77.8 55 69.1
FAN05G3974 Fragaria x ananassa HOM05D008633 ORTHO05D019156 1.0e-12 77.8 55 69.1
FAN11G1950 Fragaria x ananassa HOM05D008633 ORTHO05D019156 1.0e-12 77.8 55 69.1
FAN12G1067 Fragaria x ananassa HOM05D008633 ORTHO05D019156 1.0e-12 77.8 55 69.1
FvH4_4g33840 Fragaria vesca HOM05D008633 ORTHO05D011158 2.3e-12 76.6 45 80.0
FvH4_1g16320 Fragaria vesca HOM05D008633 ORTHO05D019156 5.0e-12 75.5 56 66.1
FAN07G2325 Fragaria x ananassa HOM05D008633 ORTHO05D210629 5.0e-12 75.5 42 81.0
FvH4_2g18400 Fragaria vesca HOM05D008633 ORTHO05D019156 1.1e-11 74.3 55 67.3
FAN07G2111 Fragaria x ananassa HOM05D000276 ORTHO05D205886 1.1e-11 74.3 90 52.2
FAN15G1198 Fragaria x ananassa HOM05D008633 ORTHO05D011158 1.5e-11 73.9 55 63.6
FAN07G2718 Fragaria x ananassa HOM05D008633 ORTHO05D206936 2.5e-11 73.2 57 61.4
FAN24G2285 Fragaria x ananassa HOM05D007608 ORTHO05D009451 2.5e-11 73.2 54 64.8
FAN20G0575 Fragaria x ananassa HOM05D008633 ORTHO05D011158 9.5e-11 71.2 55 63.6
FAN13G2045 Fragaria x ananassa HOM05D002399 ORTHO05D002479 1.6e-10 70.5 113 44.2
FAN02G2435 Fragaria x ananassa HOM05D008633 ORTHO05D019156 4.7e-10 68.9 54 63.0
FAN03G2773 Fragaria x ananassa HOM05D002288 ORTHO05D029429 4.7e-10 68.9 40 82.5
FAN16G0177 Fragaria x ananassa HOM05D008633 ORTHO05D199459 1.0e-09 67.8 68 54.4
FAN05G5276 Fragaria x ananassa HOM05D008633 ORTHO05D201895 2.3e-09 66.6 43 74.4
FAN05G3547 Fragaria x ananassa HOM05D008633 ORTHO05D210534 3.1e-09 66.2 55 60.0
FAN07G1921 Fragaria x ananassa HOM05D008633 ORTHO05D202773 4.0e-09 65.9 36 80.6
FAN08G2179 Fragaria x ananassa HOM05D008633 ORTHO05D011158 4.0e-09 65.9 44 70.5
FAN17G1127 Fragaria x ananassa HOM05D017029 ORTHO05D208879 6.8e-09 65.1 42 73.8
Pp3c22_8870 Physcomitrium patens HOM05D000276 ORTHO05D003669 2.2e-07 60.1 59 50.8
FvH4_6g54252 Fragaria vesca HOM05D008633 ORTHO05D017951 2.9e-07 59.7 42 69.0
FAN04G0940 Fragaria x ananassa HOM05D008633 ORTHO05D210886 3.7e-07 59.3 33 81.8
BcaB04g20122 Brassica carinata HOM05D000276 ORTHO05D003669 6.4e-07 58.5 69 44.9
THA.LOC104826565 Tarenaya hassleriana HOM05D000276 ORTHO05D003669 6.4e-07 58.5 69 44.9
Aa31LG1G14640 Aethionema arabicum HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
AL5G31670 Arabidopsis lyrata HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
AL8G45450 Arabidopsis lyrata HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
AT3G51260 Arabidopsis thaliana HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
AT5G66140 Arabidopsis thaliana HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
Carub.0005s1763 Capsella rubella HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
CARHR281600 Cardamine hirsuta HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
Ciclev10026339m.g Citrus clementina HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 44.9
Thhalv10004818m.g Eutrema salsugineum HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
Thhalv10004820m.g Eutrema salsugineum HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
FAN20G2729 Fragaria x ananassa HOM05D043562 ORTHO05D207117 8.3e-07 58.2 50 56.0
Oeu006645.2 Olea europaea HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 46.4
Sp2g30550 Schrenkiella parvula HOM05D000276 ORTHO05D003669 8.3e-07 58.2 69 43.5
ATR0752G002 Amborella trichopoda HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
FvH4_1g11520 Fragaria vesca HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
FAN19G1428 Fragaria x ananassa HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
FAN23G3003 Fragaria x ananassa HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
FAN26G3449 Fragaria x ananassa HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
MBI09_g13308_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
MD15G1243400 Malus domestica HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
Prupe.7G170800 Prunus persica HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
RcHm_v2.0_Chr2g0099151 Rosa chinensis HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 44.9
Sed0024543 Sechium edule HOM05D000276 ORTHO05D003669 1.1e-06 57.8 69 46.4
BcaC06g33043 Brassica carinata HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
A03p48220 Brassica napus HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
C07p46250 Brassica napus HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
BolC7t45141H Brassica oleracea HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
BraA03t13930Z Brassica rapa HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
MELO3C007920.2 Cucumis melo HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 44.9
Lj2A479T49 Lonicera japonica HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
Lj4A222T50 Lonicera japonica HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
Nn5g30758 Nelumbo nucifera HOM05D000276 ORTHO05D003669 1.4e-06 57.4 54 53.7
PSO170G0788 Papaver somniferum HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
PSO210G1597 Papaver somniferum HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
PSO541G5976 Papaver somniferum HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
PSO675G0433 Papaver somniferum HOM05D000276 ORTHO05D003669 1.4e-06 57.4 69 43.5
BcaB01g00537 Brassica carinata HOM05D000276 ORTHO05D003669 1.9e-06 57.0 69 42.0
A09p44290 Brassica napus HOM05D000276 ORTHO05D003669 1.9e-06 57.0 69 42.0
BraA09t39891Z Brassica rapa HOM05D000276 ORTHO05D003669 1.9e-06 57.0 69 42.0
FAN07G0056 Fragaria x ananassa HOM05D008633 ORTHO05D202086 1.9e-06 57.0 40 67.5
Peaxi162Scf00362g00836 Petunia axillaris HOM05D000276 ORTHO05D003669 1.9e-06 57.0 59 49.2
Peaxi162Scf01221g00028 Petunia axillaris HOM05D000276 ORTHO05D003669 1.9e-06 57.0 59 49.2
Sp5g10960 Schrenkiella parvula HOM05D000276 ORTHO05D003669 1.9e-06 57.0 69 42.0
SMO356G0431 Selaginella moellendorffii HOM05D000276 ORTHO05D003669 1.9e-06 57.0 59 49.2
THA.LOC104819170 Tarenaya hassleriana HOM05D000276 ORTHO05D003669 1.9e-06 57.0 69 43.5
CSS0004688 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 2.4e-06 56.6 69 43.5
CSS0008790 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 2.4e-06 56.6 69 43.5
Haze_03738 Corylus avellana HOM05D000276 ORTHO05D003669 2.4e-06 56.6 54 51.9
HanXRQChr16g0531541 Helianthus annuus HOM05D000276 ORTHO05D003669 2.4e-06 56.6 69 43.5
Nn6g32009 Nelumbo nucifera HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
Pp3c18_9650 Physcomitrium patens HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
Pp3c19_7610 Physcomitrium patens HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
Pp3c21_8390 Physcomitrium patens HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
QL06p051000 Quercus lobata HOM05D000276 ORTHO05D003669 2.4e-06 56.6 69 43.5
Sc16g0002340 Simmondsia chinensis HOM05D000276 ORTHO05D003669 2.4e-06 56.6 69 43.5
TAR381G1163 Trochodendron aralioides HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
GSVIVG01018748001 Vitis vinifera HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
GSVIVG01024037001 Vitis vinifera HOM05D000276 ORTHO05D003669 2.4e-06 56.6 59 49.2
Atru.chr3.841 Acer truncatum HOM05D000276 ORTHO05D003669 3.2e-06 56.2 69 43.5
Actinidia02852 Actinidia chinensis HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CSS0050163 Camellia sinensis var. sinensis HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CANSAT25G3590 Cannabis sativa HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CARHR160840 Cardamine hirsuta HOM05D000276 ORTHO05D003669 3.2e-06 56.2 69 42.0
Cfa006993 Carpinus fangiana HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CiPaw.07G060600 Carya illinoinensis HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CiPaw.08G129900 Carya illinoinensis HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CDE02G4234 Ceratophyllum demersum HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
CDE04G3614 Ceratophyllum demersum HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
DCAR_000691 Daucus carota HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
DCAR_011600 Daucus carota HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
Dinv33649 Davidia involucrata HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
ECA232G0366 Erigeron canadensis HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
Eucgr.I02334 Eucalyptus grandis HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
HanXRQChr09g0256741 Helianthus annuus HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
Lsat_1_v5_gn_4_145821 Lactuca sativa HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
PGR119G0595 Punica granatum HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
Rhsim08G0032400 Rhododendron simsii HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
Hund14057 Selenicereus undatus HOM05D000276 ORTHO05D003669 3.2e-06 56.2 69 43.5
SGA_v2.0_scaffold207G41911 Striga asiatica HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
SGA_v2.0_scaffold80G25845 Striga asiatica HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 49.2
TAR376G0640 Trochodendron aralioides HOM05D000276 ORTHO05D003669 3.2e-06 56.2 59 47.5
HPP92_015008 Vanilla planifolia HOM05D000276 ORTHO05D003669 3.2e-06 56.2 58 50.0
Atru.chr5.3304 Acer truncatum HOM05D000276 ORTHO05D003669 4.1e-06 55.8 69 42.0
EL10Ac6g15494 Beta vulgaris HOM05D000276 ORTHO05D003669 4.1e-06 55.8 69 43.5
Cc02_g16280 Coffea canephora HOM05D000276 ORTHO05D003669 4.1e-06 55.8 59 49.2
CsaV3_6G047290 Cucumis sativus L. HOM05D000276 ORTHO05D003669 4.1e-06 55.8 59 49.2
Migut.B00090 Erythranthe guttata HOM05D000276 ORTHO05D003669 4.1e-06 55.8 69 43.5
FAN17G0472 Fragaria x ananassa HOM05D008633 ORTHO05D035826 4.1e-06 55.8 34 73.5
FAN28G1455 Fragaria x ananassa HOM05D000276 ORTHO05D003669 4.1e-06 55.8 69 43.5
MBI15_g10641_MAGBIO Magnolia biondii HOM05D000276 ORTHO05D003669 4.1e-06 55.8 69 43.5
MD02G1128200 Malus domestica HOM05D000276 ORTHO05D003669 4.1e-06 55.8 69 43.5
Nitab4.5_0013387g0030 Nicotiana tabacum HOM05D000276 ORTHO05D003669 4.1e-06 55.8 59 47.5
Ah.03g149040 Amaranthus hybridus HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
Aqoxy6G02191 Aquilegia oxysepala HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
CAN.G588.64 Capsicum annuum HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
ClCG01G020410 Citrullus lanatus HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 43.5
FAN02G3000 Fragaria x ananassa HOM05D002288 ORTHO05D205043 5.4e-06 55.5 39 69.2
Glyma.02G046400 Glycine max HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
Lalb_Chr05g0229771 Lupinus albus HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
Manes.04G074800 Manihot esculenta HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
Mapoly0053s0095 Marchantia polymorpha HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
Nitab4.5_0000247g0040 Nicotiana tabacum HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
Nitab4.5_0005396g0020 Nicotiana tabacum HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
Nitab4.5_0006138g0010 Nicotiana tabacum HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
Os08g0548900 Oryza sativa ssp. japonica HOM05D000276 ORTHO05D003669 5.4e-06 55.5 58 48.3
Sed0028012 Sechium edule HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 43.5
Solyc01g111450.3 Solanum lycopersicum HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
Sopen01g053510 Solanum pennellii HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
PGSC0003DMG400006193 Solanum tuberosum HOM05D000276 ORTHO05D003669 5.4e-06 55.5 59 47.5
TPR.G19484 Trifolium pratense HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
TPR.G25817 Trifolium pratense HOM05D000276 ORTHO05D003669 5.4e-06 55.5 69 42.0
vmacro22146 Vaccinium macrocarpon HOM05D000276 ORTHO05D003669 5.4e-06 55.5 53 50.9
Zm00001eb103720 Zea mays HOM05D000276 ORTHO05D003669 5.4e-06 55.5 58 48.3
Zm00001eb332040 Zea mays HOM05D000276 ORTHO05D003669 5.4e-06 55.5 58 48.3
MSTRG.20001 Avicennia marina HOM05D000276 ORTHO05D003669 7.0e-06 55.1 59 47.5
C08p26530 Brassica napus HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 40.6
BolC8t50267H Brassica oleracea HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 40.6
Ciclev10029139m.g Citrus clementina HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 40.6
Gohir.A11G174100 Gossypium hirsutum HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 42.0
Gohir.D11G181200 Gossypium hirsutum HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 42.0
Gorai.007G193100 Gossypium raimondii HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 42.0
Medtr2g016050 Medicago truncatula HOM05D000276 ORTHO05D003669 7.0e-06 55.1 59 47.5
Sc03g0003670 Simmondsia chinensis HOM05D000276 ORTHO05D003669 7.0e-06 55.1 69 42.0
AagrBONN_evm.TU.Sc2ySwM_369.547 Anthoceros agrestis HOM05D000276 ORTHO05D003669 9.2e-06 54.7 59 47.5
FAN12G0821 Fragaria x ananassa HOM05D012050 ORTHO05D011158 9.2e-06 54.7 65 49.2
Potri.004G174200 Populus trichocarpa HOM05D000276 ORTHO05D003669 9.2e-06 54.7 69 42.0
Potri.009G133800 Populus trichocarpa HOM05D000276 ORTHO05D003669 9.2e-06 54.7 69 42.0
Sabra09G0103700 Salix brachista HOM05D000276 ORTHO05D003669 9.2e-06 54.7 69 42.0
SalBow3G1852 Salvia bowleyana HOM05D000276 ORTHO05D003669 9.2e-06 54.7 59 47.5


User provided reference genes

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