Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.1e-82 310.1 168 100.0
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 3.4e-81 305.1 168 98.2
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.8e-81 304.3 168 97.6
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.4e-79 299.7 168 97.0
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 6.7e-77 290.8 168 95.8
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 4.6e-70 268.1 168 85.1
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.1e-68 263.5 168 83.9
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.5e-68 263.1 168 83.9
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 4.3e-68 261.5 168 82.1
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 2.4e-66 255.8 168 79.8
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 2.4e-66 255.8 169 81.1
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 2.4e-66 255.8 168 81.0
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 4.1e-66 255.0 167 79.0
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 1.2e-65 253.4 171 81.3
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 2.0e-65 252.7 168 79.8
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 3.4e-65 251.9 168 79.8
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 7.6e-65 250.8 168 78.0
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 2.2e-64 249.2 171 79.5
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 2.9e-64 248.8 168 79.8
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 6.5e-64 247.7 168 79.2
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 8.4e-64 247.3 169 76.3
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 1.4e-63 246.5 168 76.8
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 2.5e-63 245.7 168 76.8
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.2e-63 245.4 168 76.2
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 3.2e-63 245.4 168 75.6
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 4.2e-63 245.0 169 77.5
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 5.5e-63 244.6 168 76.2
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 5.5e-63 244.6 168 76.8
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 7.2e-63 244.2 168 75.0
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 9.3e-63 243.8 168 76.8
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 1.6e-62 243.0 162 77.8
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 2.7e-62 242.3 169 76.3
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 3.5e-62 241.9 169 76.3
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 3.5e-62 241.9 168 75.6
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 4.6e-62 241.5 168 75.6
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 7.9e-62 240.7 169 76.3
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.0e-61 240.4 171 75.4
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 1.8e-61 239.6 168 75.0
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.3e-61 239.2 169 75.1
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 3.9e-61 238.4 169 78.7
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 6.7e-61 237.7 169 74.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 6.7e-61 237.7 169 74.0
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 6.7e-61 237.7 168 74.4
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.1e-60 236.9 169 72.8
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 1.5e-60 236.5 168 73.8
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-60 236.5 168 73.2
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 1.9e-60 236.1 168 73.2
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.5e-60 235.7 170 74.1
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 3.3e-60 235.3 169 74.6
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 3.3e-60 235.3 170 73.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 4.3e-60 235.0 169 74.6
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 5.7e-60 234.6 168 74.4
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 5.7e-60 234.6 169 74.6
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 5.7e-60 234.6 169 72.8
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 7.4e-60 234.2 172 75.0
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 1.6e-59 233.0 164 75.6
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 2.8e-59 232.3 168 73.8
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 74.0
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 2.8e-59 232.3 168 72.6
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 71.6
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 4.8e-59 231.5 170 69.4
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 6.3e-59 231.1 168 71.4
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 6.3e-59 231.1 168 71.4
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 8.2e-59 230.7 168 71.4
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.1e-58 230.3 169 72.2
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.1e-58 230.3 169 72.2
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 2.4e-58 229.2 168 70.8
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 3.1e-58 228.8 169 72.2
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 1.5e-57 226.5 168 72.6
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 2.0e-57 226.1 172 72.7
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 2.0e-57 226.1 168 70.2
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 4.5e-57 224.9 169 71.6
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 5.9e-57 224.6 168 69.6
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 5.9e-57 224.6 168 69.0
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 5.9e-57 224.6 168 69.0
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 5.9e-57 224.6 168 69.0
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 7.7e-57 224.2 168 70.8
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 7.7e-57 224.2 172 69.8
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 1.0e-56 223.8 168 69.6
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 1.7e-56 223.0 168 68.5
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 67.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 67.9
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 67.9
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.0e-56 221.5 168 67.3
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 6.5e-56 221.1 173 72.3
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 8.5e-56 220.7 169 69.8
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 2.5e-55 219.2 169 69.2
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 2.5e-55 219.2 169 68.6
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 3.2e-55 218.8 168 69.6
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 4.2e-55 218.4 168 69.0
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 4.2e-55 218.4 168 69.0
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 4.2e-55 218.4 154 77.3
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 66.7
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 9.4e-55 217.2 170 66.5
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 9.4e-55 217.2 168 66.1
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.2e-54 216.9 165 70.9
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 2.7e-54 215.7 169 69.2
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 3.6e-54 215.3 168 68.5
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 3.6e-54 215.3 169 67.5
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 4.6e-54 214.9 168 68.5
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 68.6
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 68.6
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 7.9e-54 214.2 168 68.5
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 7.9e-54 214.2 172 68.0
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 7.9e-54 214.2 172 68.0
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 7.9e-54 214.2 172 68.0
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 1.0e-53 213.8 168 67.9
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 3.0e-53 212.2 157 73.9
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 3.9e-53 211.8 161 70.2
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 3.9e-53 211.8 169 66.9
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 5.1e-53 211.5 172 64.5
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 5.1e-53 211.5 164 69.5
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 6.7e-53 211.1 166 68.7
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 6.7e-53 211.1 170 65.3
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 1.1e-52 210.3 171 64.9
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 1.1e-52 210.3 172 65.1
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 1.5e-52 209.9 173 65.9
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.5e-52 209.9 166 65.1
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.0e-52 209.5 168 66.7
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 2.0e-52 209.5 171 64.9
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 2.0e-52 209.5 171 64.9
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 4.3e-52 208.4 171 64.3
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 5.7e-52 208.0 170 65.3
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 5.7e-52 208.0 170 65.3
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 2.8e-51 205.7 169 66.3
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 3.7e-51 205.3 168 65.5
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.8e-51 204.9 172 65.1
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 4.8e-51 204.9 163 66.9
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 8.2e-51 204.1 171 65.5
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 8.2e-51 204.1 169 65.7
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 67.3
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 67.3
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 5.3e-50 201.4 168 64.3
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 1.2e-49 200.3 170 66.5
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 6.5e-48 194.5 145 73.1
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 6.5e-48 194.5 171 64.3
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 4.2e-47 191.8 170 61.2
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.7e-46 189.1 169 61.5
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 8.8e-45 184.1 102 83.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.8e-43 179.1 102 80.4
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 8.2e-43 177.6 101 82.2
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.8e-42 176.4 100 83.0
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 5.9e-41 171.4 169 59.8
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 5.0e-40 168.3 175 54.9
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 3.2e-39 165.6 170 57.6
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.0e-37 160.6 168 56.5
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 1.4e-37 160.2 119 68.9
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.3e-35 153.7 209 46.9
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.6e-33 146.7 171 49.1
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 2.9e-32 142.5 174 47.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 3.8e-32 142.1 167 49.7
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.1e-31 140.6 174 46.0
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.8e-29 133.3 174 44.8
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 1.2e-28 130.6 172 48.3
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 4.4e-28 128.6 139 51.8
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 1.7e-27 126.7 178 51.7
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 6.3e-27 124.8 70 82.9
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.1e-26 122.5 70 80.0
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 5.4e-26 121.7 149 49.0
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 1.1e-23 114.0 170 43.5
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 9.4e-23 110.9 162 42.0
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.8e-19 99.4 67 71.6
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.6e-17 93.6 81 60.5
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 6.6e-16 88.2 44 90.9
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 2.7e-09 66.2 69 65.2
TAR628G0544 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.6e-06 55.8 63 60.3


User provided reference genes

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