Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5930 Fragaria x ananassa HOM05D006573 ORTHO05D008073 2.2e-277 958.4 490 100.0
FvH4_6g01130 Fragaria vesca HOM05D006573 ORTHO05D008073 3.1e-276 954.5 490 99.4
FAN09G4254 Fragaria x ananassa HOM05D006573 ORTHO05D008073 5.7e-270 933.7 490 97.1
FAN05G2122 Fragaria x ananassa HOM05D006573 ORTHO05D008073 8.3e-269 929.9 494 95.3
FAN05G3303 Fragaria x ananassa HOM05D006573 ORTHO05D008073 1.4e-268 929.1 494 95.3
RcHm_v2.0_Chr3g0448661 Rosa chinensis HOM05D006573 ORTHO05D008073 1.0e-255 886.3 490 90.2
Prupe.6G356100 Prunus persica HOM05D006573 ORTHO05D008073 3.6e-232 808.1 490 81.8
MD12G1255200 Malus domestica HOM05D006573 ORTHO05D008073 7.6e-222 773.9 490 77.6
CANSAT21G0678 Cannabis sativa HOM05D006573 ORTHO05D008073 1.9e-201 706.1 489 71.0
Thecc.05G259800 Theobroma cacao HOM05D006573 ORTHO05D008073 5.1e-194 681.4 496 66.9
Ciclev10019925m.g Citrus clementina HOM05D006573 ORTHO05D008073 1.3e-192 676.8 492 66.3
Duzib177G1122 Durio zibethinus HOM05D006573 ORTHO05D008073 8.2e-192 674.1 496 67.5
Gohir.D11G250400 Gossypium hirsutum HOM05D006573 ORTHO05D008073 5.8e-190 667.9 496 66.3
Gorai.007G268500 Gossypium raimondii HOM05D006573 ORTHO05D008073 5.8e-190 667.9 496 66.3
Manes.09G144600 Manihot esculenta HOM05D006573 ORTHO05D008073 5.0e-189 664.8 478 68.2
TAR362G0441 Trochodendron aralioides HOM05D006573 ORTHO05D008073 2.5e-188 662.5 492 68.9
GSVIVG01026405001 Vitis vinifera HOM05D006573 ORTHO05D008073 3.2e-188 662.1 449 70.8
Potri.013G053100 Populus trichocarpa HOM05D006573 ORTHO05D008073 9.3e-188 660.6 496 67.9
CSS0006565 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 4.6e-187 658.3 492 70.1
Sabra13G0048100 Salix brachista HOM05D006573 ORTHO05D008073 2.4e-183 646.0 532 64.1
Cpa.g.sc51.78 Carica papaya HOM05D006573 ORTHO05D008073 4.1e-183 645.2 490 65.7
Eucgr.B02180 Eucalyptus grandis HOM05D006573 ORTHO05D008073 4.1e-183 645.2 491 65.4
Nn1g07946 Nelumbo nucifera HOM05D006573 ORTHO05D008073 9.0e-183 644.0 452 69.2
Atru.chr2.1254 Acer truncatum HOM05D006573 ORTHO05D008073 2.0e-182 642.9 492 66.1
Actinidia06814 Actinidia chinensis HOM05D006573 ORTHO05D008073 3.4e-182 642.1 494 66.6
Dinv19279 Davidia involucrata HOM05D006573 ORTHO05D008073 1.0e-181 640.6 492 65.7
Hma1.2p1_0123F.1_g058030 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.3e-181 640.2 492 66.1
Gohir.A11G241000 Gossypium hirsutum HOM05D006573 ORTHO05D008073 1.6e-179 633.3 492 64.8
Cc09_g03200 Coffea canephora HOM05D006573 ORTHO05D008073 2.1e-179 632.9 498 65.3
Lj1g0015745 Lotus japonicus HOM05D006573 ORTHO05D008073 1.0e-178 630.6 489 63.8
THA.LOC104805797 Tarenaya hassleriana HOM05D006573 ORTHO05D008073 8.8e-178 627.5 381 76.9
Haze_04495 Corylus avellana HOM05D006573 ORTHO05D008073 2.5e-177 625.9 372 79.3
CiPaw.07G075700 Carya illinoinensis HOM05D006573 ORTHO05D008073 4.3e-177 625.2 488 63.5
MBI11_g07442_MAGBIO Magnolia biondii HOM05D006573 ORTHO05D008073 2.8e-176 622.5 454 67.8
Glyma.19G251000 Glycine max HOM05D006573 ORTHO05D008073 3.1e-175 619.0 493 63.3
Nitab4.5_0012098g0010 Nicotiana tabacum HOM05D006573 ORTHO05D008073 5.3e-175 618.2 449 68.8
CAN.G29.20 Capsicum annuum HOM05D006573 ORTHO05D008073 2.6e-174 615.9 451 68.5
PGSC0003DMG400010688 Solanum tuberosum HOM05D006573 ORTHO05D008073 2.6e-174 615.9 451 69.0
Aa31sc20G120 Aethionema arabicum HOM05D006573 ORTHO05D008073 1.0e-173 614.0 396 71.5
Glyma.03G253500 Glycine max HOM05D006573 ORTHO05D008073 1.0e-173 614.0 381 76.4
TWI34G1215 Tripterygium wilfordii HOM05D006573 ORTHO05D008073 1.0e-173 614.0 492 61.8
Nitab4.5_0000344g0030 Nicotiana tabacum HOM05D006573 ORTHO05D008073 1.3e-173 613.6 450 68.0
AL1G18980 Arabidopsis lyrata HOM05D006573 ORTHO05D008073 1.9e-172 609.8 401 72.3
VMungo0540G0667 Vigna mungo HOM05D006573 ORTHO05D008073 1.9e-172 609.8 397 72.8
BraA06t23762Z Brassica rapa HOM05D006573 ORTHO05D008073 2.5e-172 609.4 400 72.2
Sp1g07210 Schrenkiella parvula HOM05D006573 ORTHO05D008073 1.2e-171 607.1 471 63.9
A06p05540 Brassica napus HOM05D006573 ORTHO05D008073 1.6e-171 606.7 400 71.8
Thhalv10007587m.g Eutrema salsugineum HOM05D006573 ORTHO05D008073 1.6e-171 606.7 400 71.8
TPR.G4727 Trifolium pratense HOM05D006573 ORTHO05D008073 2.1e-171 606.3 397 72.0
BolC5t29425H Brassica oleracea HOM05D006573 ORTHO05D008073 2.7e-171 605.9 400 71.8
Sopen04g022050 Solanum pennellii HOM05D006573 ORTHO05D008073 2.7e-171 605.9 493 64.5
C05p06650 Brassica napus HOM05D006573 ORTHO05D008073 6.1e-171 604.7 400 71.5
AUR62005294 Chenopodium quinoa HOM05D006573 ORTHO05D008073 7.9e-171 604.4 508 61.4
Migut.F02066 Erythranthe guttata HOM05D006573 ORTHO05D008073 1.4e-170 603.6 440 68.6
Solyc04g050930.3 Solanum lycopersicum HOM05D006573 ORTHO05D008073 1.4e-170 603.6 493 64.3
CARHR008450 Cardamine hirsuta HOM05D006573 ORTHO05D008073 1.8e-170 603.2 402 71.9
Phvul.006G108200 Phaseolus vulgaris HOM05D006573 ORTHO05D008073 1.8e-170 603.2 378 75.7
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 3.0e-170 602.4 381 73.5
AUR62000660 Chenopodium quinoa HOM05D006573 ORTHO05D008073 3.9e-170 602.1 507 61.1
Lalb_Chr18g0044221 Lupinus albus HOM05D006573 ORTHO05D008073 5.1e-170 601.7 401 69.6
CSS0039030 Camellia sinensis var. sinensis HOM05D006573 ORTHO05D008073 8.8e-170 600.9 492 65.2
Medtr7g116630 Medicago truncatula HOM05D006573 ORTHO05D008073 4.4e-169 598.6 438 65.8
SGA_v2.0_scaffold13G06342 Striga asiatica HOM05D006573 ORTHO05D008073 4.4e-169 598.6 425 69.2
Sc09g0001730 Simmondsia chinensis HOM05D006573 ORTHO05D008073 8.2e-168 594.3 443 67.5
Aqoxy2G03898 Aquilegia oxysepala HOM05D006573 ORTHO05D008073 1.1e-167 594.0 451 65.6
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 5.3e-167 591.7 422 67.3
PSO063G7541 Papaver somniferum HOM05D006573 ORTHO05D008073 5.3e-167 591.7 408 71.6
CDE05G0683 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 1.2e-166 590.5 385 72.2
ATR0069G016 Amborella trichopoda HOM05D006573 ORTHO05D008073 1.5e-166 590.1 369 75.9
arahy.Tifrunner.gnm1.ann1.L0KK3Q Arachis hypogaea HOM05D006573 ORTHO05D008073 2.6e-166 589.3 439 65.8
HPP92_020222 Vanilla planifolia HOM05D001545 ORTHO05D001600 2.6e-166 589.3 454 64.5
AT1G08550 Arabidopsis thaliana HOM05D006573 ORTHO05D008073 4.5e-166 588.6 401 70.3
EL10Ac4g09803 Beta vulgaris HOM05D006573 ORTHO05D008073 4.5e-166 588.6 494 60.7
PSO017G7064 Papaver somniferum HOM05D006573 ORTHO05D008073 1.0e-165 587.4 420 69.3
Carub.0001s0791 Capsella rubella HOM05D006573 ORTHO05D008073 2.9e-165 585.9 401 70.8
Oeu054601.1 Olea europaea HOM05D006573 ORTHO05D008073 2.5e-164 582.8 487 61.4
Lj2A407T38 Lonicera japonica HOM05D006573 ORTHO05D008073 4.7e-163 578.6 395 73.4
MSTRG.8177 Avicennia marina HOM05D006573 ORTHO05D008073 3.9e-162 575.5 454 63.4
Psat3g005000 Pisum sativum HOM05D006573 ORTHO05D008073 8.8e-162 574.3 467 61.2
ECA248G2645 Erigeron canadensis HOM05D006573 ORTHO05D008073 2.0e-161 573.2 507 59.0
DCAR_013654 Daucus carota HOM05D006573 ORTHO05D008073 7.4e-161 571.2 523 59.1
Zm00001eb085840 Zea mays HOM05D006573 ORTHO05D008073 1.7e-160 570.1 386 69.2
HanXRQChr13g0406621 Helianthus annuus HOM05D006573 ORTHO05D008073 6.3e-160 568.2 386 70.7
BcaB07g34098 Brassica carinata HOM05D006573 ORTHO05D008073 8.2e-160 567.8 400 69.0
Peaxi162Scf01011g00215 Petunia axillaris HOM05D006573 ORTHO05D008073 8.2e-160 567.8 451 65.0
Lj2A405T39 Lonicera japonica HOM05D006573 ORTHO05D008073 2.2e-157 559.7 400 70.2
vmacro12852 Vaccinium macrocarpon HOM05D006573 ORTHO05D008073 2.7e-155 552.7 581 53.7
Lsat_1_v5_gn_7_62281 Lactuca sativa HOM05D006573 ORTHO05D008073 1.2e-153 547.4 386 68.9
ClCG11G010060 Citrullus lanatus HOM05D006573 ORTHO05D008073 7.0e-151 538.1 380 66.6
CsaV3_2G010250 Cucumis sativus L. HOM05D006573 ORTHO05D008073 1.2e-150 537.3 362 70.2
MELO3C008677.2 Cucumis melo HOM05D006573 ORTHO05D008073 2.7e-150 536.2 362 69.9
Hund07152 Selenicereus undatus HOM05D006573 ORTHO05D008073 7.7e-150 534.6 496 58.7
Sed0012720 Sechium edule HOM05D006573 ORTHO05D008073 2.5e-148 529.6 442 62.2
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 2.1e-147 526.6 488 58.4
SEGI_03231 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 8.0e-147 524.6 356 69.9
Ah.06g188810 Amaranthus hybridus HOM05D006573 ORTHO05D008073 3.0e-146 522.7 387 66.9
SalBow1G2715 Salvia bowleyana HOM05D006573 ORTHO05D008073 6.3e-144 515.0 483 58.8
SalBow1G0293 Salvia bowleyana HOM05D006573 ORTHO05D008073 2.4e-143 513.1 483 58.6
Mapoly0111s0023 Marchantia polymorpha HOM05D006573 ORTHO05D008073 6.1e-139 498.4 372 65.6
COL.COLO4_20557 Corchorus olitorius HOM05D006573 ORTHO05D008073 4.0e-138 495.7 272 81.6
AagrBONN_evm.TU.Sc2ySwM_228.1660 Anthoceros agrestis HOM05D006573 ORTHO05D008073 1.8e-130 470.3 384 59.9
Pp3c3_13220 Physcomitrium patens HOM05D006573 ORTHO05D008073 6.8e-130 468.4 389 60.7
SMO270G0104 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 1.3e-128 464.2 339 65.2
CBR_g38554 Chara braunii HOM05D006573 ORTHO05D008073 3.7e-120 436.0 361 57.3
CDE05G0621 Ceratophyllum demersum HOM05D006573 ORTHO05D008073 8.9e-114 414.8 247 74.5
SEGI_19143 Sequoiadendron giganteum HOM05D006573 ORTHO05D008073 1.6e-110 404.1 288 63.2
Hma1.2p1_0123F.1_g058020 Hydrangea macrophylla HOM05D006573 ORTHO05D008073 1.1e-103 381.3 316 61.7
Os04g0379700 Oryza sativa ssp. japonica HOM05D006573 ORTHO05D008073 1.8e-98 364.0 252 68.3
Lj2C408T2 Lonicera japonica HOM05D006573 ORTHO05D008073 7.6e-97 358.6 384 54.2
unitig_46.g17980 Utricularia gibba HOM05D006573 ORTHO05D008073 7.1e-95 352.1 240 70.0
PGSC0003DMG400010690 Solanum tuberosum HOM05D006573 ORTHO05D008073 5.8e-81 305.8 239 62.3
SMO297G0027 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.2e-72 277.3 204 57.8
SMO334G0031 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.2e-72 277.3 204 57.8
PRCOL_00001224 Prasinoderma coloniale HOM05D006573 ORTHO05D008073 1.4e-71 274.6 307 44.3
MCO16G084 Micromonas commoda HOM05D006573 ORTHO05D008073 4.2e-71 273.1 310 44.5
SMO297G0014 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 5.5e-71 272.7 204 56.9
SMO270G0143 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 2.7e-70 270.4 204 55.9
PGSC0003DMG400020993 Solanum tuberosum HOM05D006573 ORTHO05D008073 7.2e-55 219.2 210 53.3
unitig_46.g17981 Utricularia gibba HOM05D006573 ORTHO05D008073 2.2e-35 154.5 149 57.7
SMO266G0012 Selaginella moellendorffii HOM05D006573 ORTHO05D008073 4.1e-34 150.2 98 61.2
QL93p0249_0008 Quercus lobata HOM05D006573 ORTHO05D008073 4.0e-29 133.7 165 47.9
Haze_04503 Corylus avellana HOM05D006573 ORTHO05D008073 2.2e-19 101.3 101 59.4
Haze_04505 Corylus avellana HOM05D006573 ORTHO05D008073 9.5e-15 85.9 92 56.5
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 1.5e-12 78.6 269 23.0
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.4e-12 77.4 341 23.5
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 4.4e-12 77.0 266 23.3
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 7.5e-12 76.3 267 21.3
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 7.5e-12 76.3 269 22.7
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 9.8e-12 75.9 309 23.0
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 1.3e-11 75.5 277 22.7
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 4.9e-11 73.6 273 22.7
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 4.9e-11 73.6 282 23.4
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 8.3e-11 72.8 243 22.2
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.1e-10 72.4 270 21.1
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 1.1e-10 72.4 295 19.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.1e-10 72.4 295 19.7
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 1.4e-10 72.0 259 20.8
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.4e-10 72.0 293 20.8
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.9e-10 71.6 273 20.1
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 1.9e-10 71.6 330 21.5
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 2.4e-10 71.2 275 22.9
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 3.2e-10 70.9 293 21.2
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 4.1e-10 70.5 293 21.2
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 5.4e-10 70.1 162 24.1
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 7.0e-10 69.7 296 22.6
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.0e-10 69.7 294 21.4
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.6e-09 68.6 268 20.5
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 2.0e-09 68.2 321 21.2
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 2.0e-09 68.2 295 19.7
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 2.7e-09 67.8 270 22.6
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 4.6e-09 67.0 267 22.5
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.0e-08 65.9 137 22.6
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 1.5e-07 62.0 378 20.9


User provided reference genes

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