Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1758.0 930 100.0
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 0.0e+00 1741.5 930 99.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1718.4 922 98.8
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1678.3 930 96.1
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1669.4 922 96.2
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1464.9 939 85.6
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1365.5 924 82.1
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 0.0e+00 1196.4 951 71.0
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 0.0e+00 1193.7 951 72.2
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 0.0e+00 1174.1 949 70.3
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.5e-295 1019.6 945 62.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 2.7e-289 998.8 949 62.4
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 6.1e-289 997.7 1013 58.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 2.2e-286 989.2 950 62.7
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 4.0e-280 968.4 950 59.6
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 1.4e-277 959.9 950 59.5
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-273 946.8 949 60.1
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.3e-272 942.6 959 59.4
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.5e-271 937.6 948 59.2
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.3e-270 936.8 951 58.7
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.7e-270 935.3 951 58.6
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 4.9e-270 934.9 948 58.5
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 6.4e-270 934.5 956 57.1
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.8e-269 932.9 951 58.4
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.0e-269 931.0 954 57.3
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 5.0e-267 924.9 957 58.9
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.1e-266 923.7 954 57.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 9.2e-261 904.0 915 57.7
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 1.6e-260 903.3 950 57.5
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 2.3e-259 899.4 933 57.2
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 7.5e-255 884.4 939 57.3
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.9e-254 881.7 947 56.0
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 2.7e-252 875.9 1003 53.4
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.0e-251 874.0 953 54.6
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-251 873.6 939 56.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 6.4e-246 854.7 956 55.2
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 5.4e-245 851.7 951 56.2
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 9.6e-242 840.9 947 53.5
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.1e-241 839.7 953 54.6
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.1e-240 837.4 948 53.8
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.8e-240 836.6 950 55.6
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.2e-239 833.9 951 53.2
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 6.6e-235 818.1 956 52.8
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 2.5e-234 816.2 933 53.9
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 7.1e-229 798.1 951 54.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 6.0e-228 795.0 878 53.6
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 1.0e-227 794.3 958 51.9
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 2.3e-227 793.1 951 51.5
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 3.9e-227 792.3 931 53.2
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.3e-225 787.3 926 53.2
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.1e-225 784.6 923 51.4
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 1.2e-223 780.8 927 51.8
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 3.4e-223 779.2 923 50.9
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 7.6e-223 778.1 927 52.0
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.2e-222 776.5 982 51.7
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 3.8e-222 775.8 968 50.9
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 1.1e-221 774.2 676 64.3
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 1.9e-221 773.5 903 52.4
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 7.1e-221 771.5 933 53.3
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 7.1e-221 771.5 955 51.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 1.2e-220 770.8 950 51.5
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 3.7e-217 759.2 1020 50.1
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 4.0e-216 755.7 937 50.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 9.0e-216 754.6 981 51.0
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 9.3e-213 744.6 929 52.9
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 9.3e-213 744.6 930 50.2
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 4.6e-212 742.3 945 49.4
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 4.1e-208 729.2 915 51.6
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.2e-207 727.6 951 49.8
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 8.5e-206 721.5 932 50.9
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.2e-204 717.6 903 49.6
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.0e-202 710.3 909 49.4
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 4.3e-202 709.1 945 50.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 5.7e-202 708.8 788 55.3
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 2.2e-201 706.8 946 50.0
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 3.7e-201 706.1 920 50.0
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 7.7e-199 698.4 956 47.6
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.3e-198 697.6 899 48.7
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.5e-197 693.3 904 49.6
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 4.2e-197 692.6 916 48.7
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.5e-194 684.1 951 48.3
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 1.5e-194 684.1 927 49.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.6e-194 683.3 963 46.1
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.4e-194 681.8 904 49.2
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.7e-193 680.6 940 47.1
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.3e-190 671.0 934 45.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 3.8e-190 669.5 910 48.5
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 2.5e-189 666.8 956 46.8
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.1e-188 663.7 679 57.6
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 2.0e-186 657.1 910 46.3
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.3e-186 656.4 921 47.4
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 3.3e-186 656.4 866 49.5
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.5e-183 646.0 923 47.8
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.7e-182 644.0 920 47.8
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.9e-182 643.3 917 47.4
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 3.0e-179 633.3 928 45.2
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 3.0e-179 633.3 910 47.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 2.0e-178 630.6 897 47.2
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.3e-178 629.8 943 46.3
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 5.7e-178 629.0 876 48.9
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 3.7e-177 626.3 613 61.3
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.5e-175 619.8 924 44.8
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 2.3e-171 607.1 941 45.3
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.0e-170 604.0 960 44.9
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 2.6e-170 603.6 939 44.3
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 9.8e-170 601.7 934 45.3
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 4.8e-169 599.4 865 47.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.2e-167 594.7 871 47.3
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 5.9e-167 592.4 931 44.7
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.0e-166 589.3 942 43.1
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 8.6e-166 588.6 920 45.1
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 5.7e-162 575.9 920 42.5
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 5.4e-160 569.3 964 44.6
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 1.0e-158 565.1 921 43.9
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.4e-155 554.7 506 62.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 4.4e-154 549.7 868 44.5
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 9.8e-154 548.5 924 42.5
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 1.0e-150 538.5 944 43.8
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 3.0e-150 537.0 943 43.6
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-148 531.6 899 43.5
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 2.1e-148 530.8 962 43.2
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 2.8e-148 530.4 963 43.0
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 2.8e-148 530.4 963 43.0
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 6.2e-148 529.3 962 43.2
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 3.1e-147 526.9 698 49.7
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.2e-146 525.0 963 42.7
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 2.0e-146 524.2 944 43.1
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 5.8e-146 522.7 944 42.6
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 2.9e-145 520.4 675 50.5
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 2.9e-145 520.4 945 43.1
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 6.4e-145 519.2 944 41.9
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 3.9e-142 510.0 911 41.7
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 7.3e-141 505.8 939 39.9
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 4.4e-138 496.5 855 41.2
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.2e-137 494.2 639 49.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 7.3e-133 479.2 695 47.2
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.6e-132 476.9 962 39.5
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 8.1e-132 475.7 920 41.2
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 8.9e-131 472.2 471 58.6
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.4e-122 443.4 422 60.4
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.4e-120 437.6 862 39.0
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 9.9e-114 415.6 854 39.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 1.3e-110 405.2 848 39.6
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.8e-108 397.5 916 34.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 4.0e-107 393.7 641 44.3
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 3.3e-101 374.0 572 43.4
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 6.9e-99 366.3 927 34.1
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 5.0e-97 360.1 443 56.7
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-93 348.6 275 65.8
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 1.5e-90 338.6 1016 34.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.1e-85 322.4 338 56.5
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 9.7e-77 292.7 381 49.1
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 2.6e-74 284.6 809 32.6
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.5e-73 280.0 847 31.9
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.9e-70 270.8 826 31.0
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 3.2e-64 251.1 934 28.3
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 4.2e-64 250.8 212 63.7
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 1.2e-63 249.2 758 33.2
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 9.8e-61 239.6 426 43.2
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 2.4e-59 235.0 283 50.5
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 2.6e-53 214.9 281 48.8
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 3.7e-44 184.5 109 76.1
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.0e-42 178.7 344 41.0
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 8.6e-41 173.3 269 43.5
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 1.6e-39 169.1 586 29.4
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 2.1e-39 168.7 190 52.6
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 9.8e-37 159.8 477 30.4
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.2e-35 153.3 265 47.2
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.3e-33 149.4 103 69.9
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 6.6e-25 120.6 156 48.1
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 2.3e-22 112.1 149 43.6
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 2.4e-19 102.1 90 72.2
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.9e-17 94.7 110 43.6
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.6e-17 94.0 152 39.5
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.2e-15 87.4 117 44.4
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-14 86.3 149 36.9
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.2e-13 83.2 117 48.7
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 3.4e-13 81.6 123 43.9
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 3.8e-12 78.2 44 77.3
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.1e-11 76.6 121 37.2
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 6.0e-10 70.9 102 37.3


User provided reference genes

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