Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 0.0e+00 1082.4 547 100.0
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 7.3e-258 893.6 484 94.6
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 1.2e-212 743.4 461 80.5
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 3.9e-203 711.8 463 78.8
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 2.0e-194 682.9 464 74.1
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 5.9e-191 671.4 464 72.6
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 4.4e-186 655.2 332 98.2
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 1.4e-184 650.2 458 72.7
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 1.6e-180 636.7 464 70.0
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 5.2e-179 631.7 466 69.3
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.0e-178 629.8 464 70.5
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.6e-178 629.4 465 68.8
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.4e-176 622.9 464 66.6
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 3.8e-174 615.5 466 69.7
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 1.5e-173 613.6 443 69.5
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 1.2e-170 604.0 439 69.0
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 1.5e-170 603.6 432 69.9
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 7.5e-170 601.3 430 71.6
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 8.3e-169 597.8 454 67.6
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 3.2e-168 595.9 469 65.7
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 4.1e-168 595.5 461 67.0
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 9.2e-168 594.3 438 66.9
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.2e-167 594.0 461 66.8
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 3.5e-167 592.4 450 66.4
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 5.9e-167 591.7 450 66.4
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 3.0e-166 589.3 427 69.6
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 3.3e-165 585.9 442 67.0
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.6e-164 583.6 431 66.4
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 2.8e-164 582.8 434 68.2
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 4.7e-164 582.0 433 66.3
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 4.7e-164 582.0 431 66.1
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 1.0e-163 580.9 441 64.6
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 5.2e-163 578.6 478 63.6
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 7.5e-162 574.7 464 63.6
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 1.3e-161 573.9 458 62.4
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 8.3e-161 571.2 456 62.3
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 1.1e-160 570.9 315 90.2
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.4e-160 570.5 456 62.1
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 1.9e-160 570.1 439 64.9
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 7.0e-160 568.2 454 64.3
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 7.8e-159 564.7 444 63.1
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 1.3e-158 563.9 450 64.7
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 2.1e-156 556.6 446 63.9
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 1.1e-155 554.3 446 64.1
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 2.3e-155 553.1 447 64.7
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.2e-154 550.8 452 62.8
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.2e-154 550.8 463 61.3
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 4.4e-154 548.9 440 62.7
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 9.8e-154 547.7 459 62.1
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 3.7e-153 545.8 450 62.2
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 1.4e-152 543.9 452 60.6
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 4.1e-152 542.3 407 64.1
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 2.1e-151 540.0 450 63.6
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 3.5e-151 539.3 463 61.3
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 6.0e-151 538.5 459 61.4
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 2.3e-150 536.6 441 63.0
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 3.0e-150 536.2 450 62.9
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 3.9e-150 535.8 459 60.1
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 6.6e-150 535.0 459 61.2
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 1.9e-149 533.5 417 65.0
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 2.5e-149 533.1 412 62.4
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 5.6e-149 531.9 474 59.3
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 7.3e-149 531.6 452 62.6
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.2e-148 530.8 445 62.5
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 1.2e-148 530.8 433 63.0
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 1.8e-147 526.9 449 61.9
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 1.5e-146 523.9 449 61.9
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 2.0e-146 523.5 434 62.2
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.3e-145 520.8 444 61.5
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 3.8e-145 519.2 450 61.8
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 8.4e-145 518.1 450 62.0
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 9.2e-144 514.6 455 57.1
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.2e-143 514.2 466 59.2
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 1.7e-142 510.4 450 61.1
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 2.3e-142 510.0 443 59.8
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 6.6e-142 508.4 446 60.1
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 8.6e-142 508.1 399 65.2
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 2.1e-140 503.4 483 57.8
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 4.9e-137 492.3 504 54.4
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 2.8e-132 476.5 356 67.1
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.8e-131 473.8 471 55.6
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.7e-127 459.9 242 97.1
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 4.6e-127 459.1 431 55.2
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 4.6e-127 459.1 445 54.2
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 2.3e-126 456.8 435 54.3
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 3.9e-126 456.1 455 58.2
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 1.1e-123 448.0 433 55.0
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 3.2e-120 436.4 329 65.0
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 1.0e-118 431.4 715 38.7
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 1.4e-112 411.0 301 66.8
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 4.2e-112 409.5 384 59.1
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.2e-111 407.9 435 49.0
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 4.1e-107 392.9 330 59.7
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 2.5e-104 383.6 357 52.9
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 1.6e-103 380.9 444 49.1
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.1e-99 368.2 386 45.9
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 1.0e-97 361.7 310 59.7
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 5.5e-96 355.9 319 57.4
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 1.6e-95 354.4 317 59.0
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 1.0e-94 351.7 383 48.0
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 3.0e-94 350.1 319 58.3
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 6.9e-91 339.0 235 70.6
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 4.2e-88 329.7 350 54.9
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.8e-86 324.3 396 49.7
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.6e-71 274.6 212 65.1
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.8e-70 271.2 434 40.3
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.4e-67 261.5 217 61.3
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.9e-65 253.8 174 68.4
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.5e-64 251.5 147 89.8
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 1.1e-56 225.3 213 56.3
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 2.6e-53 214.2 211 56.4
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 6.4e-44 183.0 135 66.7
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 3.2e-43 180.6 233 45.1
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.5e-40 171.8 172 51.2
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 6.8e-38 162.9 142 62.7
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 2.7e-34 151.0 132 62.9
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 1.2e-29 135.6 133 57.9
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 2.9e-28 131.0 98 64.3
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.7e-25 121.7 400 26.8
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 7.3e-24 116.3 390 25.9
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 1.1e-22 112.5 105 49.5
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 2.2e-20 104.8 373 25.7
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 1.0e-17 95.9 125 45.6
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 6.6e-17 93.2 74 64.9
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 2.8e-15 87.8 90 52.2
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 7.1e-11 73.2 440 22.7
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 9.6e-08 62.8 40 75.0


User provided reference genes

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