Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G5085 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.5e-72 274.2 142 100.0
FAN02G2337 Fragaria x ananassa HOM05D003159 ORTHO05D003780 2.5e-61 238.8 142 88.7
FvH4_6g42830 Fragaria vesca HOM05D003159 ORTHO05D003780 3.0e-54 215.3 111 99.1
FAN09G3766 Fragaria x ananassa HOM05D003159 ORTHO05D003780 6.7e-54 214.2 133 86.5
RcHm_v2.0_Chr3g0450361 Rosa chinensis HOM05D003159 ORTHO05D003780 2.5e-40 169.1 142 70.4
FAN05G1365 Fragaria x ananassa HOM05D003159 ORTHO05D003780 5.5e-40 167.9 120 77.5
Prupe.6G346800 Prunus persica HOM05D003159 ORTHO05D003780 3.1e-35 152.1 142 63.4
MD04G1227600 Malus domestica HOM05D003159 ORTHO05D003780 2.6e-34 149.1 142 61.3
MD12G1244300 Malus domestica HOM05D003159 ORTHO05D003780 5.9e-34 147.9 142 60.6
CANSAT54G0311 Cannabis sativa HOM05D003159 ORTHO05D003780 5.0e-33 144.8 142 60.6
Duzib128G1665 Durio zibethinus HOM05D003159 ORTHO05D003780 1.1e-32 143.7 142 60.6
Potri.013G043500 Populus trichocarpa HOM05D003159 ORTHO05D003780 1.1e-32 143.7 142 60.6
Cpa.g.sc162.4 Carica papaya HOM05D003159 ORTHO05D003780 2.5e-32 142.5 142 59.9
Manes.15G108700 Manihot esculenta HOM05D003159 ORTHO05D003780 2.5e-32 142.5 142 59.2
GSVIVG01036258001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.5e-32 142.5 142 59.2
Gohir.A09G017500 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.5e-32 141.4 140 59.3
Gohir.D13G031700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 5.5e-32 141.4 140 59.3
Gorai.013G036100 Gossypium raimondii HOM05D003159 ORTHO05D003780 5.5e-32 141.4 140 59.3
FAN08G2202 Fragaria x ananassa HOM05D003159 ORTHO05D003780 7.2e-32 141.0 142 59.9
FAN18G4088 Fragaria x ananassa HOM05D003159 ORTHO05D003780 7.2e-32 141.0 142 59.9
Gorai.007G279300 Gossypium raimondii HOM05D003159 ORTHO05D003780 7.2e-32 141.0 140 58.6
FvH4_5g12790 Fragaria vesca HOM05D003159 ORTHO05D003780 9.4e-32 140.6 142 59.9
FAN18G4090 Fragaria x ananassa HOM05D003159 ORTHO05D003780 9.4e-32 140.6 142 59.9
Actinidia06777 Actinidia chinensis HOM05D003159 ORTHO05D003780 1.2e-31 140.2 140 58.6
QL01p030114 Quercus lobata HOM05D003159 ORTHO05D003780 2.1e-31 139.4 141 57.4
Oeu054532.1 Olea europaea HOM05D003159 ORTHO05D003780 2.7e-31 139.0 140 57.9
Thecc.05G277700 Theobroma cacao HOM05D003159 ORTHO05D003780 2.7e-31 139.0 140 58.6
Peaxi162Scf00120g00723 Petunia axillaris HOM05D003159 ORTHO05D003780 3.6e-31 138.7 140 57.9
Sabra19G0017400 Salix brachista HOM05D003159 ORTHO05D003780 3.6e-31 138.7 142 57.7
vmacro19526 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.6e-31 138.7 140 59.3
vmacro20008 Vaccinium macrocarpon HOM05D003159 ORTHO05D003780 3.6e-31 138.7 140 59.3
COL.COLO4_15406 Corchorus olitorius HOM05D003159 ORTHO05D003780 4.7e-31 138.3 142 57.7
Potri.019G012300 Populus trichocarpa HOM05D003159 ORTHO05D003780 6.1e-31 137.9 142 57.7
HanXRQChr04g0112121 Helianthus annuus HOM05D003159 ORTHO05D003780 1.0e-30 137.1 140 57.9
Sabra19G0024900 Salix brachista HOM05D003159 ORTHO05D003780 1.0e-30 137.1 142 57.0
Nitab4.5_0001781g0080 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.4e-30 136.7 140 57.9
SalBow8G0718 Salvia bowleyana HOM05D003159 ORTHO05D003780 1.4e-30 136.7 140 57.9
CiPaw.08G119500 Carya illinoinensis HOM05D003159 ORTHO05D003780 1.8e-30 136.3 142 57.7
Eucgr.J00270 Eucalyptus grandis HOM05D003159 ORTHO05D003780 1.8e-30 136.3 142 57.0
Solyc11g006340.2 Solanum lycopersicum HOM05D003159 ORTHO05D003780 1.8e-30 136.3 140 57.1
Sopen11g002240 Solanum pennellii HOM05D003159 ORTHO05D003780 1.8e-30 136.3 140 57.1
CAN.G143.64 Capsicum annuum HOM05D003159 ORTHO05D003780 2.3e-30 136.0 140 57.1
Gohir.D11G260700 Gossypium hirsutum HOM05D003159 ORTHO05D003780 2.3e-30 136.0 140 57.1
Nn3g19572 Nelumbo nucifera HOM05D003159 ORTHO05D003780 2.3e-30 136.0 140 58.6
Rhsim01G0186900 Rhododendron simsii HOM05D003159 ORTHO05D003780 3.0e-30 135.6 147 57.1
Migut.F01579 Erythranthe guttata HOM05D003159 ORTHO05D003780 4.0e-30 135.2 140 56.4
PGSC0003DMG400000995 Solanum tuberosum HOM05D003159 ORTHO05D003780 4.0e-30 135.2 140 57.1
Ciclev10027983m.g Citrus clementina HOM05D003159 ORTHO05D003780 6.7e-30 134.4 140 57.1
HanXRQChr05g0152861 Helianthus annuus HOM05D003159 ORTHO05D003780 6.7e-30 134.4 140 57.9
SGA_v2.0_scaffold4G01959 Striga asiatica HOM05D003159 ORTHO05D003780 6.7e-30 134.4 140 57.1
DCAR_028953 Daucus carota HOM05D003159 ORTHO05D003780 8.8e-30 134.0 140 57.1
TAR362G0530 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.5e-29 133.3 142 56.3
CSS0035771 Camellia sinensis var. sinensis HOM05D003159 ORTHO05D003780 2.0e-29 132.9 132 59.8
PGR031G1742 Punica granatum HOM05D003159 ORTHO05D003780 2.0e-29 132.9 140 55.0
ECA248G3699 Erigeron canadensis HOM05D003159 ORTHO05D003780 2.6e-29 132.5 140 57.1
Sed0018461 Sechium edule HOM05D003159 ORTHO05D003780 5.7e-29 131.3 136 58.1
Dinv05722 Davidia involucrata HOM05D003159 ORTHO05D003780 7.5e-29 131.0 132 59.1
Glyma.10G163700 Glycine max HOM05D003159 ORTHO05D003780 9.7e-29 130.6 140 55.7
TPR.G26626 Trifolium pratense HOM05D003159 ORTHO05D003780 9.7e-29 130.6 140 54.3
TPR.G33936 Trifolium pratense HOM05D003159 ORTHO05D003780 9.7e-29 130.6 140 54.3
Glyma.20G226300 Glycine max HOM05D003159 ORTHO05D003780 1.7e-28 129.8 140 55.0
CsaV3_2G033180 Cucumis sativus L. HOM05D003159 ORTHO05D003780 2.2e-28 129.4 134 58.2
AUR62033998 Chenopodium quinoa HOM05D003159 ORTHO05D003780 2.8e-28 129.0 140 54.3
Phvul.007G188800 Phaseolus vulgaris HOM05D003159 ORTHO05D003780 2.8e-28 129.0 140 55.7
Ah.09g228380 Amaranthus hybridus HOM05D003159 ORTHO05D003780 3.7e-28 128.6 140 54.3
Cc02_g09140 Coffea canephora HOM05D003159 ORTHO05D003780 4.8e-28 128.3 140 55.7
MSTRG.927 Avicennia marina HOM05D003159 ORTHO05D003780 8.2e-28 127.5 139 54.7
Carub.0004s1964 Capsella rubella HOM05D003159 ORTHO05D003780 8.2e-28 127.5 140 54.3
MELO3C008089.2 Cucumis melo HOM05D003159 ORTHO05D003780 8.2e-28 127.5 134 57.5
AL4G34620 Arabidopsis lyrata HOM05D003159 ORTHO05D003780 1.1e-27 127.1 140 54.3
arahy.Tifrunner.gnm1.ann1.N0IL4Q Arachis hypogaea HOM05D003159 ORTHO05D003780 1.1e-27 127.1 140 53.6
arahy.Tifrunner.gnm1.ann1.W48W00 Arachis hypogaea HOM05D003159 ORTHO05D003780 1.1e-27 127.1 140 53.6
Lsat_1_v5_gn_9_121981 Lactuca sativa HOM05D003159 ORTHO05D003780 1.4e-27 126.7 139 56.1
Aqoxy4G01990 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 2.4e-27 125.9 140 53.6
Medtr1g080500 Medicago truncatula HOM05D003159 ORTHO05D003780 2.4e-27 125.9 140 52.9
AT2G37690 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 3.1e-27 125.6 140 53.6
Sp4g20070 Schrenkiella parvula HOM05D003159 ORTHO05D003780 3.1e-27 125.6 140 52.9
BcaB01g03763 Brassica carinata HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.1
BcaC01g05601 Brassica carinata HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.9
BcaC02g07498 Brassica carinata HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.1
A03p20800 Brassica napus HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.9
A04p28880 Brassica napus HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.1
C04p66140 Brassica napus HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.1
BraA03t11320Z Brassica rapa HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.9
BraA04t18362Z Brassica rapa HOM05D003159 ORTHO05D003780 4.1e-27 125.2 140 52.1
Aqoxy6G02795 Aquilegia oxysepala HOM05D003159 ORTHO05D003780 5.3e-27 124.8 140 53.6
BcaB06g29020 Brassica carinata HOM05D003159 ORTHO05D003780 5.3e-27 124.8 140 52.9
Sc06g0010270 Simmondsia chinensis HOM05D003159 ORTHO05D003780 5.3e-27 124.8 140 55.0
THA.LOC104808027 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 5.3e-27 124.8 140 53.6
QL07p003261 Quercus lobata HOM05D003159 ORTHO05D003780 7.0e-27 124.4 141 54.6
Aa31LG8G11740 Aethionema arabicum HOM05D003159 ORTHO05D003780 9.1e-27 124.0 140 53.6
C03p24440 Brassica napus HOM05D003159 ORTHO05D003780 9.1e-27 124.0 140 52.1
BolC4t28117H Brassica oleracea HOM05D003159 ORTHO05D003780 1.2e-26 123.6 140 51.4
Thhalv10016367m.g Eutrema salsugineum HOM05D003159 ORTHO05D003780 1.2e-26 123.6 140 52.9
Lj5g0023348 Lotus japonicus HOM05D003159 ORTHO05D003780 1.2e-26 123.6 139 53.2
AT2G05140 Arabidopsis thaliana HOM05D003159 ORTHO05D003780 1.6e-26 123.2 140 52.9
Haze_04383 Corylus avellana HOM05D003159 ORTHO05D003780 1.6e-26 123.2 140 55.7
CARHR131850 Cardamine hirsuta HOM05D003159 ORTHO05D003780 3.5e-26 122.1 140 52.9
Sabra19G0025000 Salix brachista HOM05D003159 ORTHO05D003780 3.5e-26 122.1 142 53.5
Aa31sc70G90 Aethionema arabicum HOM05D003159 ORTHO05D003780 4.5e-26 121.7 140 52.1
HPP92_021777 Vanilla planifolia HOM05D003159 ORTHO05D003780 4.5e-26 121.7 142 50.0
TWI81G0941 Tripterygium wilfordii HOM05D003159 ORTHO05D003780 1.3e-25 120.2 137 52.6
Lalb_Chr06g0168161 Lupinus albus HOM05D003159 ORTHO05D003780 3.8e-25 118.6 141 52.5
Lalb_Chr21g0311061 Lupinus albus HOM05D003159 ORTHO05D003780 3.8e-25 118.6 140 52.1
Rhsim05G0176200 Rhododendron simsii HOM05D003159 ORTHO05D003780 1.1e-24 117.1 184 44.6
Sabra19G0025200 Salix brachista HOM05D003159 ORTHO05D003780 1.9e-24 116.3 152 50.7
Sabra19G0025600 Salix brachista HOM05D003159 ORTHO05D003780 2.5e-24 115.9 152 50.7
ATR0111G007 Amborella trichopoda HOM05D003159 ORTHO05D003780 7.2e-24 114.4 137 51.8
VMungo0720G2291 Vigna mungo HOM05D003159 ORTHO05D003780 9.4e-24 114.0 123 54.5
DCAR_001864 Daucus carota HOM05D003159 ORTHO05D003780 1.2e-23 113.6 111 59.5
EL10Ac8g19239 Beta vulgaris HOM05D003159 ORTHO05D003780 1.6e-23 113.2 166 44.0
Ca_10033_v3 Cicer arietinum L. HOM05D003159 ORTHO05D003780 2.1e-23 112.8 110 58.2
Hund02191 Selenicereus undatus HOM05D003159 ORTHO05D003780 2.7e-23 112.5 130 52.3
MBI12_g21500_MAGBIO Magnolia biondii HOM05D003159 ORTHO05D003780 3.6e-23 112.1 140 48.6
BolC3t14843H Brassica oleracea HOM05D003159 ORTHO05D003780 8.0e-23 110.9 111 56.8
PSO675G5476 Papaver somniferum HOM05D003159 ORTHO05D003780 1.4e-22 110.2 140 49.3
Sabra19G0025100 Salix brachista HOM05D003159 ORTHO05D003780 2.3e-22 109.4 131 52.7
unitig_22.g5684 Utricularia gibba HOM05D003159 ORTHO05D003780 3.0e-22 109.0 138 50.0
Psat6g145160 Pisum sativum HOM05D003159 ORTHO05D003780 4.0e-22 108.6 116 55.2
PSO541G5176 Papaver somniferum HOM05D003159 ORTHO05D003780 6.8e-22 107.8 140 48.6
SMO270G0125 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 1.5e-21 106.7 138 43.5
Mapoly0046s0034 Marchantia polymorpha HOM05D003159 ORTHO05D003780 2.0e-21 106.3 139 46.8
Pp3c2_24240 Physcomitrium patens HOM05D003159 ORTHO05D003780 3.4e-21 105.5 139 46.8
AUR62027480 Chenopodium quinoa HOM05D003159 ORTHO05D003780 5.7e-21 104.8 111 56.8
PSO170G0868 Papaver somniferum HOM05D003159 ORTHO05D003780 7.5e-21 104.4 140 46.4
PSO782G2231 Papaver somniferum HOM05D003159 ORTHO05D003780 1.3e-20 103.6 140 46.4
Sabra19G0025400 Salix brachista HOM05D003159 ORTHO05D003780 2.2e-20 102.8 115 55.7
Os01g0199900 Oryza sativa ssp. japonica HOM05D003159 ORTHO05D003780 1.4e-19 100.1 138 44.9
Zm00001eb120570 Zea mays HOM05D003159 ORTHO05D003780 2.4e-19 99.4 139 45.3
MCO10G267 Micromonas commoda HOM05D003159 ORTHO05D003780 1.2e-18 97.1 139 43.2
Nitab4.5_0007901g0030 Nicotiana tabacum HOM05D003159 ORTHO05D003780 1.6e-18 96.7 150 47.3
Sabra19G0025900 Salix brachista HOM05D003159 ORTHO05D003780 2.0e-18 96.3 115 54.8
CDE05G0407 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.7e-18 95.9 138 43.5
QL03p028499 Quercus lobata HOM05D003159 ORTHO05D003780 3.5e-18 95.5 141 46.8
Cre12.g503300 Chlamydomonas reinhardtii HOM05D003159 ORTHO05D003780 1.0e-17 94.0 140 42.1
Lj3C918G0 Lonicera japonica HOM05D003159 ORTHO05D003780 1.0e-17 94.0 137 43.8
SHI06090 Sapria himalayana HOM05D003159 ORTHO05D003780 1.0e-17 94.0 131 46.6
Cfa025150 Carpinus fangiana HOM05D003159 ORTHO05D003780 2.9e-17 92.4 138 39.9
CDE11G0603 Ceratophyllum demersum HOM05D003159 ORTHO05D003780 2.9e-17 92.4 138 41.3
SMO358G0312 Selaginella moellendorffii HOM05D003159 ORTHO05D003780 2.5e-16 89.4 139 40.3
PRCOL_00005277 Prasinoderma coloniale HOM05D003159 ORTHO05D003780 7.2e-16 87.8 142 43.0
Hma1.2p1_0345F.1_g131280 Hydrangea macrophylla HOM05D003159 ORTHO05D003780 3.6e-15 85.5 60 73.3
PSO170G3230 Papaver somniferum HOM05D003159 ORTHO05D003780 4.7e-15 85.1 140 42.1
arahy.Tifrunner.gnm1.ann1.H397QS Arachis hypogaea HOM05D003159 ORTHO05D003780 2.3e-14 82.8 60 71.7
THA.LOC104799866 Tarenaya hassleriana HOM05D003159 ORTHO05D003780 4.0e-14 82.0 60 71.7
TAR362G1104 Trochodendron aralioides HOM05D003159 ORTHO05D003468 1.2e-13 80.5 60 71.7
CBR_g8948 Chara braunii HOM05D003159 ORTHO05D003780 3.4e-13 79.0 112 44.6
TAR362G0177 Trochodendron aralioides HOM05D003159 ORTHO05D003780 1.3e-12 77.0 92 52.2
BcaB02g09259 Brassica carinata HOM05D003159 ORTHO05D003780 3.7e-12 75.5 107 44.9
Glyma.01G101050 Glycine max HOM05D003159 ORTHO05D003780 2.4e-11 72.8 58 67.2
SEGI_34284 Sequoiadendron giganteum HOM05D003159 ORTHO05D003780 4.1e-11 72.0 60 61.7
ClCG11G008930 Citrullus lanatus HOM05D003159 ORTHO05D003780 5.4e-11 71.6 60 65.0
Sed0012102 Sechium edule HOM05D003159 ORTHO05D003780 1.2e-10 70.5 136 41.9
Gorai.007G279200 Gossypium raimondii HOM05D003159 ORTHO05D003780 5.9e-10 68.2 64 56.2
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 7.8e-10 67.8 52 67.3
GSVIVG01036259001 Vitis vinifera HOM05D003159 ORTHO05D003780 2.5e-08 62.8 104 45.2
C09p45540 Brassica napus HOM05D003159 ORTHO05D003780 7.3e-08 61.2 134 35.1
Ciclev10021626m.g Citrus clementina HOM05D003159 ORTHO05D003780 4.0e-06 55.5 109 37.6
Cc06_g22420 Coffea canephora HOM05D003159 ORTHO05D003780 5.2e-06 55.1 63 49.2


User provided reference genes

Program Settings