Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.4e-63 246.1 126 100.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 1.3e-45 186.4 114 84.2
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 5.0e-45 184.5 107 87.9
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.5e-44 183.0 110 85.5
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 7.3e-44 180.6 107 85.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 4.0e-42 174.9 114 76.3
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 4.0e-42 174.9 123 74.8
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.6e-41 172.2 107 82.2
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 6.4e-40 167.5 110 77.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 8.3e-40 167.2 110 76.4
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.7e-38 162.2 110 74.5
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 2.7e-38 162.2 110 74.5
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.7e-38 162.2 110 75.5
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.0e-37 160.2 110 73.6
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.7e-37 159.5 108 74.1
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 3.0e-37 158.7 110 73.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 8.6e-37 157.1 110 70.0
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 8.6e-37 157.1 111 69.4
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.9e-36 156.0 110 71.8
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 4.3e-36 154.8 106 72.6
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 7.3e-36 154.1 112 70.5
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.6e-35 152.9 110 67.3
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 1.6e-35 152.9 110 69.1
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 1.1e-34 150.2 110 68.2
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.1e-34 150.2 110 65.5
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.1e-34 150.2 110 67.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.3e-34 149.1 111 71.2
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 2.3e-34 149.1 108 67.6
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 3.1e-34 148.7 106 70.8
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.1e-34 148.7 111 70.3
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.1e-34 148.7 108 65.7
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.1e-34 148.7 116 70.7
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 4.0e-34 148.3 102 72.5
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.2e-34 147.9 106 70.8
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 5.2e-34 147.9 106 69.8
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 6.8e-34 147.5 112 65.2
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 6.8e-34 147.5 108 66.7
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 8.9e-34 147.1 103 68.9
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 8.9e-34 147.1 102 70.6
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 8.9e-34 147.1 103 72.8
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.0e-33 146.0 107 69.2
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 2.0e-33 146.0 113 61.9
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.6e-33 145.6 103 68.9
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 3.4e-33 145.2 113 61.1
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 3.4e-33 145.2 107 64.5
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 3.4e-33 145.2 102 68.6
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 4.4e-33 144.8 112 63.4
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.4e-33 144.8 102 67.6
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 7.6e-33 144.1 105 64.8
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 7.6e-33 144.1 105 64.8
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 1.3e-32 143.3 120 65.0
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.3e-32 143.3 102 66.7
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 1.7e-32 142.9 113 61.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.7e-32 142.9 104 67.3
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 2.2e-32 142.5 106 70.8
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.9e-32 142.1 105 66.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.9e-32 142.1 108 66.7
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 3.7e-32 141.7 116 62.1
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 6.4e-32 141.0 114 59.6
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.4e-32 141.0 105 67.6
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 8.4e-32 140.6 106 65.1
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 8.4e-32 140.6 106 63.2
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 8.4e-32 140.6 103 66.0
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-31 140.2 109 64.2
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.1e-31 140.2 103 66.0
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.1e-31 140.2 109 64.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.9e-31 139.4 105 65.7
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.9e-31 139.4 107 62.6
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 3.2e-31 138.7 105 64.8
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 3.2e-31 138.7 108 63.9
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 4.1e-31 138.3 103 66.0
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 4.1e-31 138.3 108 63.9
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 5.4e-31 137.9 105 62.9
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 7.1e-31 137.5 122 61.5
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 2.1e-30 136.0 102 64.7
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 2.1e-30 136.0 105 65.7
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.6e-30 134.8 138 58.0
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 4.6e-30 134.8 113 61.9
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 4.6e-30 134.8 103 65.0
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 6.0e-30 134.4 104 62.5
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 7.8e-30 134.0 106 60.4
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 7.8e-30 134.0 113 57.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 1.3e-29 133.3 110 59.1
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 1.7e-29 132.9 110 57.3
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 2.3e-29 132.5 119 60.5
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 3.0e-29 132.1 112 54.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 3.9e-29 131.7 103 59.2
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 5.1e-29 131.3 104 59.6
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.1e-29 131.3 110 58.2
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 5.1e-29 131.3 121 58.7
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 6.6e-29 131.0 119 58.0
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.1e-28 130.2 113 55.8
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.5e-28 129.8 107 58.9
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 1.9e-28 129.4 93 68.8
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 4.3e-28 128.3 105 61.9
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 7.3e-28 127.5 105 62.9
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.6e-27 126.3 89 69.7
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.1e-27 125.9 105 61.0
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.1e-27 125.9 105 61.0
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 2.1e-27 125.9 110 60.0
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 4.7e-27 124.8 110 60.0
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 4.7e-27 124.8 88 69.3
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 4.7e-27 124.8 115 55.7
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 4.0e-26 121.7 72 81.9
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 8.9e-26 120.6 78 71.8
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.8e-24 115.2 125 51.2
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 2.1e-22 109.4 88 61.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 6.0e-22 107.8 88 60.2
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 6.0e-22 107.8 88 60.2
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 2.3e-21 105.9 82 63.4
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 3.0e-21 105.5 88 58.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.7e-21 104.0 111 43.2
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.5e-20 103.2 108 50.0
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 3.6e-19 98.6 114 41.2
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.6e-17 92.4 124 37.9
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 5.8e-17 91.3 81 64.2
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 7.6e-17 90.9 102 43.1
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 8.4e-16 87.4 72 54.2
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 4.2e-15 85.1 51 78.4
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 7.1e-15 84.3 53 71.7
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 6.0e-14 81.3 81 50.6
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 9.0e-10 67.4 74 44.6
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.1e-07 60.5 62 58.1
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 7.1e-07 57.8 69 37.7
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-06 57.0 31 90.3


User provided reference genes

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