Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.2e-178 628.2 306 100.0
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 9.4e-138 493.8 249 98.8
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.6e-129 465.3 250 94.0
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.2e-126 456.1 252 91.7
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 1.5e-122 443.4 293 78.2
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 6.8e-96 354.8 248 71.8
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 4.6e-92 342.0 219 76.7
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 9.3e-77 291.2 253 60.1
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 2.3e-75 286.6 267 56.9
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 1.1e-72 277.7 250 58.0
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.3e-65 254.2 251 56.2
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 2.5e-61 240.0 244 54.5
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 3.7e-41 172.9 210 47.6
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 3.7e-41 172.9 245 43.7
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 3.1e-40 169.9 202 43.6
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 4.1e-40 169.5 245 40.0
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 4.1e-40 169.5 238 40.8
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 9.1e-40 168.3 182 47.8
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.5e-39 167.5 196 42.9
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 7.7e-39 165.2 196 41.8
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 7.7e-39 165.2 196 41.8
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 1.7e-38 164.1 248 36.7
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 2.9e-38 163.3 246 39.8
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 5.0e-38 162.5 250 38.0
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 5.0e-38 162.5 245 40.0
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 6.5e-38 162.2 235 39.6
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 8.5e-38 161.8 227 38.8
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 8.5e-38 161.8 203 39.4
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.1e-37 161.4 222 41.9
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 1.5e-37 161.0 261 39.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 4.2e-37 159.5 229 39.3
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 5.5e-37 159.1 194 42.8
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 7.2e-37 158.7 229 39.3
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 1.2e-36 157.9 195 41.0
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 1.6e-36 157.5 196 42.3
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 1.6e-36 157.5 201 43.3
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 2.7e-36 156.8 204 39.7
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 2.7e-36 156.8 242 38.0
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 2.7e-36 156.8 242 38.0
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 2.7e-36 156.8 239 39.3
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.7e-36 156.8 231 39.8
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.7e-36 156.8 231 39.8
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 4.7e-36 156.0 215 36.7
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 6.1e-36 155.6 227 37.0
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 6.1e-36 155.6 232 38.4
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 8.0e-36 155.2 239 37.2
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 1.8e-35 154.1 196 40.8
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.3e-35 153.7 238 39.1
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 3.0e-35 153.3 206 41.3
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 3.9e-35 152.9 193 42.5
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 5.2e-35 152.5 186 41.4
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.7e-35 152.1 230 40.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 6.7e-35 152.1 222 39.2
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 6.7e-35 152.1 210 39.0
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 8.8e-35 151.8 216 39.4
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 1.1e-34 151.4 222 37.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 2.0e-34 150.6 213 37.6
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 2.6e-34 150.2 205 41.0
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 3.3e-34 149.8 195 40.5
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 3.3e-34 149.8 222 36.0
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 5.7e-34 149.1 214 39.3
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.7e-34 149.1 214 39.7
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 9.7e-34 148.3 210 39.0
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 9.7e-34 148.3 202 40.1
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.3e-33 147.9 236 36.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 2.2e-33 147.1 195 40.5
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 2.8e-33 146.7 195 40.5
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.8e-33 146.7 215 39.5
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 4.8e-33 146.0 194 39.7
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 4.8e-33 146.0 194 39.7
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 6.3e-33 145.6 195 40.0
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 6.3e-33 145.6 197 39.1
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.1e-32 144.8 251 33.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.1e-32 144.8 211 37.9
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.4e-32 144.4 212 38.2
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 1.8e-32 144.1 251 34.7
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.8e-32 144.1 217 35.5
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 7.0e-32 142.1 195 39.5
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 2.0e-31 140.6 195 39.5
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 2.0e-31 140.6 168 40.5
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 2.6e-31 140.2 195 39.0
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 2.6e-31 140.2 195 39.5
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 2.6e-31 140.2 195 39.5
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 2.6e-31 140.2 186 39.8
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.6e-31 140.2 196 37.2
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 3.5e-31 139.8 229 35.8
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 3.5e-31 139.8 201 36.8
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.5e-31 139.4 184 39.7
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 1.0e-30 138.3 253 31.2
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.0e-30 138.3 247 33.2
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 1.3e-30 137.9 218 31.2
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 1.7e-30 137.5 191 38.7
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.2e-30 137.1 210 36.7
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.9e-30 136.7 216 34.7
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 2.9e-30 136.7 198 36.9
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 3.8e-30 136.3 195 35.4
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 3.8e-30 136.3 198 37.9
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 6.5e-30 135.6 251 33.9
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 8.5e-30 135.2 212 36.3
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 8.5e-30 135.2 195 36.9
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 8.5e-30 135.2 195 36.9
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 8.5e-30 135.2 204 37.7
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.5e-29 134.4 189 39.7
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 3.2e-29 133.3 239 35.6
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.5e-29 132.5 173 40.5
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 7.2e-29 132.1 232 34.1
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 7.2e-29 132.1 223 35.0
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.2e-28 131.3 175 37.7
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 2.1e-28 130.6 219 37.4
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 3.6e-28 129.8 160 41.2
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 4.7e-28 129.4 225 34.7
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 4.7e-28 129.4 195 35.9
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 6.1e-28 129.0 196 35.7
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 1.0e-27 128.3 231 34.6
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 2.3e-27 127.1 191 33.5
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 3.0e-27 126.7 202 35.1
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 4.0e-27 126.3 231 34.2
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 6.8e-27 125.6 243 31.3
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 1.2e-26 124.8 161 41.0
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 1.5e-26 124.4 184 37.0
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.0e-26 124.0 176 39.8
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 5.7e-26 122.5 146 42.5
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 5.7e-26 122.5 145 42.8
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 7.5e-26 122.1 179 38.5
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 9.8e-26 121.7 245 30.2
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.2e-25 120.6 145 42.1
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.2e-25 120.6 204 36.3
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 4.8e-25 119.4 227 32.2
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 6.3e-25 119.0 197 32.0
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 1.8e-24 117.5 193 36.3
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.4e-24 117.1 177 36.2
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 4.1e-24 116.3 145 41.4
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 1.6e-23 114.4 182 35.7
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 2.7e-23 113.6 235 27.7
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 3.5e-23 113.2 211 31.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 2.9e-22 110.2 139 40.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.2e-20 104.8 189 32.8
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 4.7e-20 102.8 187 29.9
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 8.0e-20 102.1 228 31.6
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 8.0e-20 102.1 139 38.1
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.2e-18 98.2 194 32.0
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 1.5e-18 97.8 165 29.7
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.1e-16 91.7 193 30.6
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 1.4e-16 91.3 195 31.3
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.5e-15 86.3 135 40.7
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 7.7e-15 85.5 175 29.7
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-12 78.2 194 26.8
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 6.1e-12 75.9 199 26.6
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 3.4e-10 70.1 137 33.6
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 4.9e-09 66.2 154 27.9
MD17G1053100 Malus domestica HOM05D004214 ORTHO05D004963 2.0e-07 60.8 115 40.0
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.7e-07 60.5 82 40.2
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 3.9e-06 56.6 191 25.1


User provided reference genes

Program Settings