Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3315 Fragaria x ananassa HOM05D016056 ORTHO05D014811 5.8e-186 654.1 327 100.0
FAN09G2121 Fragaria x ananassa HOM05D016056 ORTHO05D014811 2.5e-67 260.0 198 71.7
FAN09G2219 Fragaria x ananassa HOM05D016056 ORTHO05D014811 6.2e-63 245.4 283 54.4
FvH4_6g48600 Fragaria vesca HOM05D016056 ORTHO05D014811 5.5e-59 232.3 192 67.2
FAN02G4173 Fragaria x ananassa HOM05D016056 ORTHO05D014811 1.5e-53 214.2 389 42.7
FAN05G0532 Fragaria x ananassa HOM05D016056 ORTHO05D014811 7.4e-40 168.7 263 45.2
FAN09G2231 Fragaria x ananassa HOM05D016056 ORTHO05D014811 2.7e-26 123.6 134 56.7
RcHm_v2.0_Chr2g0168431 Rosa chinensis HOM05D000113 ORTHO05D014811 2.6e-24 117.1 95 68.4
FAN14G5275 Fragaria x ananassa HOM05D016056 ORTHO05D199332 5.4e-22 109.4 59 88.1
RcHm_v2.0_Chr2g0168451 Rosa chinensis HOM05D000113 ORTHO05D006161 3.5e-21 106.7 59 88.1
RcHm_v2.0_Chr7g0220161 Rosa chinensis HOM05D000113 ORTHO05D006161 2.7e-13 80.5 62 69.4
RcHm_v2.0_Chr7g0220171 Rosa chinensis HOM05D000113 ORTHO05D006161 2.7e-13 80.5 92 53.3
FvH4_3g40090 Fragaria vesca HOM05D000113 ORTHO05D006161 4.5e-13 79.7 92 52.2
FAN11G2310 Fragaria x ananassa HOM05D000113 ORTHO05D006161 4.5e-13 79.7 92 52.2
FAN16G3510 Fragaria x ananassa HOM05D000113 ORTHO05D006161 4.5e-13 79.7 92 52.2
FAN21G3024 Fragaria x ananassa HOM05D000113 ORTHO05D006161 4.5e-13 79.7 92 52.2
RcHm_v2.0_Chr4g0407811 Rosa chinensis HOM05D000113 ORTHO05D006161 5.9e-13 79.3 92 52.2
Prupe.1G193500 Prunus persica HOM05D000113 ORTHO05D006161 7.7e-13 79.0 92 52.2
DCAR_018927 Daucus carota HOM05D000310 ORTHO05D006161 3.8e-12 76.6 93 49.5
COL.COLO4_23301 Corchorus olitorius HOM05D000113 ORTHO05D006161 1.5e-11 74.7 95 46.3
MD04G1241500 Malus domestica HOM05D000113 ORTHO05D006161 2.5e-11 73.9 92 48.9
Duzib138G1872 Durio zibethinus HOM05D000113 ORTHO05D006161 4.2e-11 73.2 94 47.9
Prupe.1G445700 Prunus persica HOM05D000113 ORTHO05D006161 5.6e-11 72.8 92 50.0
PSO675G6280 Papaver somniferum HOM05D000113 ORTHO05D006161 1.2e-10 71.6 92 44.6
FAN05G5637 Fragaria x ananassa HOM05D016056 ORTHO05D035858 2.1e-10 70.9 38 92.1
TAR633G2709 Trochodendron aralioides HOM05D000113 ORTHO05D006161 2.8e-10 70.5 95 44.2
CSS0016737 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 3.6e-10 70.1 92 47.8
Os02g0736600 Oryza sativa ssp. japonica HOM05D000113 ORTHO05D006161 3.6e-10 70.1 91 44.0
PSO339G3312 Papaver somniferum HOM05D000113 ORTHO05D006161 4.7e-10 69.7 92 46.7
Thecc.10G083300 Theobroma cacao HOM05D000113 ORTHO05D006161 4.7e-10 69.7 92 46.7
Eucgr.E04059 Eucalyptus grandis HOM05D000113 ORTHO05D006161 6.1e-10 69.3 166 33.1
Gohir.D07G130400 Gossypium hirsutum HOM05D000113 ORTHO05D006161 6.1e-10 69.3 94 45.7
Hma1.2p1_0212F.1_g090260 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 6.1e-10 69.3 92 46.7
Lj5A370T56 Lonicera japonica HOM05D000113 ORTHO05D006161 6.1e-10 69.3 92 47.8
DCAR_012372 Daucus carota HOM05D000113 ORTHO05D006161 8.0e-10 68.9 91 46.2
Lj2C1199T13 Lonicera japonica HOM05D000113 ORTHO05D006161 8.0e-10 68.9 92 47.8
SalBow6G1114 Salvia bowleyana HOM05D000113 ORTHO05D006161 8.0e-10 68.9 94 43.6
Thecc.01G306300 Theobroma cacao HOM05D000113 ORTHO05D006161 8.0e-10 68.9 92 43.5
Dinv42093 Davidia involucrata HOM05D000113 ORTHO05D006161 1.0e-09 68.6 92 45.7
HanXRQChr04g0105431 Helianthus annuus HOM05D000113 ORTHO05D006161 1.0e-09 68.6 85 47.1
Gorai.001G141100 Gossypium raimondii HOM05D000113 ORTHO05D006161 1.4e-09 68.2 94 45.7
Manes.01G223000 Manihot esculenta HOM05D000113 ORTHO05D006161 1.4e-09 68.2 92 45.7
PGR044G2751 Punica granatum HOM05D000113 ORTHO05D006161 1.4e-09 68.2 90 45.6
SGA_v2.0_scaffold334G49027 Striga asiatica HOM05D000113 ORTHO05D006161 1.4e-09 68.2 237 28.7
vmacro04631 Vaccinium macrocarpon HOM05D000113 ORTHO05D006161 2.3e-09 67.4 91 45.1
Zm00001eb253900 Zea mays HOM05D000113 ORTHO05D006161 3.0e-09 67.0 87 41.4
CDE07G0864 Ceratophyllum demersum HOM05D000113 ORTHO05D006161 5.2e-09 66.2 198 29.3
Sc26g0003690 Simmondsia chinensis HOM05D000113 ORTHO05D006161 5.2e-09 66.2 96 45.8
Cpa.g.sc151.33 Carica papaya HOM05D000113 ORTHO05D006161 8.9e-09 65.5 97 44.3
Cfa005867 Carpinus fangiana HOM05D000113 ORTHO05D006161 8.9e-09 65.5 92 44.6
Hma1.2p1_0098F.1_g048470 Hydrangea macrophylla HOM05D000113 ORTHO05D006161 8.9e-09 65.5 87 44.8
MD05G1017800 Malus domestica HOM05D000113 ORTHO05D006161 8.9e-09 65.5 135 40.7
Potri.002G201400 Populus trichocarpa HOM05D000113 ORTHO05D006161 8.9e-09 65.5 63 58.7
Sopen01g039450 Solanum pennellii HOM05D000113 ORTHO05D006161 8.9e-09 65.5 96 42.7
TWI59G0818 Tripterygium wilfordii HOM05D000113 ORTHO05D006161 8.9e-09 65.5 92 45.7
TAR362G0332 Trochodendron aralioides HOM05D000113 ORTHO05D006161 8.9e-09 65.5 95 41.1
unitig_22.g5234 Utricularia gibba HOM05D000113 ORTHO05D006161 8.9e-09 65.5 136 33.1
AT1G33390 Arabidopsis thaliana HOM05D000113 ORTHO05D006161 1.2e-08 65.1 100 40.0
arahy.Tifrunner.gnm1.ann1.M111ST Arachis hypogaea HOM05D000113 ORTHO05D006161 1.2e-08 65.1 91 44.0
CiPaw.07G112500 Carya illinoinensis HOM05D000113 ORTHO05D006161 1.2e-08 65.1 93 43.0
Sed0026170 Sechium edule HOM05D000113 ORTHO05D006161 1.2e-08 65.1 87 43.7
arahy.Tifrunner.gnm1.ann1.SIBB7F Arachis hypogaea HOM05D000113 ORTHO05D006161 1.5e-08 64.7 91 44.0
Gohir.A07G126300 Gossypium hirsutum HOM05D000113 ORTHO05D006161 1.5e-08 64.7 94 43.6
Nn5g26851 Nelumbo nucifera HOM05D000113 ORTHO05D006161 2.0e-08 64.3 92 40.2
Oeu008340.1 Olea europaea HOM05D000113 ORTHO05D006161 2.0e-08 64.3 93 43.0
Actinidia25823 Actinidia chinensis HOM05D000113 ORTHO05D006161 2.6e-08 63.9 93 44.1
TPR.G23919 Trifolium pratense HOM05D000113 ORTHO05D006161 2.6e-08 63.9 199 28.6
CAN.G986.23 Capsicum annuum HOM05D000113 ORTHO05D006161 3.4e-08 63.5 96 41.7
AL8G14950 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 4.4e-08 63.2 98 38.8
Sp7g11220 Schrenkiella parvula HOM05D000113 ORTHO05D006161 4.4e-08 63.2 148 30.4
AL1G47770 Arabidopsis lyrata HOM05D000113 ORTHO05D006161 5.7e-08 62.8 98 38.8
EL10Ac6g14998 Beta vulgaris HOM05D000113 ORTHO05D006161 5.7e-08 62.8 63 54.0
Lj2g0016628 Lotus japonicus HOM05D000113 ORTHO05D006161 5.7e-08 62.8 91 41.8
Sc15g0001890 Simmondsia chinensis HOM05D000113 ORTHO05D006161 5.7e-08 62.8 96 44.8
THA.LOC104802184 Tarenaya hassleriana HOM05D000113 ORTHO05D006161 5.7e-08 62.8 94 40.4
CARHR032810 Cardamine hirsuta HOM05D000113 ORTHO05D006161 7.5e-08 62.4 147 30.6
Atru.chr5.1086 Acer truncatum HOM05D000113 ORTHO05D006161 9.8e-08 62.0 142 35.2
CSS0034422 Camellia sinensis var. sinensis HOM05D000113 ORTHO05D006161 9.8e-08 62.0 92 42.4
MELO3C015960.2 Cucumis melo HOM05D000113 ORTHO05D006161 9.8e-08 62.0 157 32.5
Thhalv10024243m.g Eutrema salsugineum HOM05D000113 ORTHO05D006161 9.8e-08 62.0 99 37.4
Migut.D00126 Erythranthe guttata HOM05D000113 ORTHO05D006161 1.3e-07 61.6 63 52.4
SEGI_29750 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 1.3e-07 61.6 98 40.8
Lj4g0011992 Lotus japonicus HOM05D000113 ORTHO05D006161 2.2e-07 60.8 91 40.7
QL12p027746 Quercus lobata HOM05D000113 ORTHO05D006161 2.2e-07 60.8 63 55.6
Aa31LG1G28830 Aethionema arabicum HOM05D000113 ORTHO05D006161 2.9e-07 60.5 96 37.5
Cc08_g12990 Coffea canephora HOM05D000113 ORTHO05D006161 2.9e-07 60.5 91 42.9
CsaV3_7G029610 Cucumis sativus L. HOM05D000113 ORTHO05D006161 2.9e-07 60.5 87 42.5
ECA248G0290 Erigeron canadensis HOM05D000113 ORTHO05D006161 2.9e-07 60.5 91 39.6
Psat7g233480 Pisum sativum HOM05D000113 ORTHO05D006161 2.9e-07 60.5 92 41.3
Solyc01g095710.3 Solanum lycopersicum HOM05D000113 ORTHO05D006161 2.9e-07 60.5 63 52.4
Ca_15122_v3 Cicer arietinum L. HOM05D000113 ORTHO05D006161 3.7e-07 60.1 92 40.2
ClCG09G005490 Citrullus lanatus HOM05D000113 ORTHO05D006161 3.7e-07 60.1 87 39.1
BcaB07g30168 Brassica carinata HOM05D000113 ORTHO05D006161 4.9e-07 59.7 98 36.7
AUR62008717 Chenopodium quinoa HOM05D000113 ORTHO05D006161 6.4e-07 59.3 63 54.0
Ciclev10018519m.g Citrus clementina HOM05D000113 ORTHO05D006161 6.4e-07 59.3 95 42.1
Peaxi162Scf00150g00139 Petunia axillaris HOM05D000113 ORTHO05D006161 6.4e-07 59.3 63 50.8
PGSC0003DMG401000100 Solanum tuberosum HOM05D000113 ORTHO05D006161 6.4e-07 59.3 63 50.8
BcaC03g17457 Brassica carinata HOM05D000113 ORTHO05D006161 8.3e-07 58.9 63 52.4
A02p35320 Brassica napus HOM05D000113 ORTHO05D006161 8.3e-07 58.9 63 52.4
C02p54060 Brassica napus HOM05D000113 ORTHO05D006161 8.3e-07 58.9 63 52.4
BolC2t11468H Brassica oleracea HOM05D000113 ORTHO05D006161 8.3e-07 58.9 63 52.4
BraA02t08535Z Brassica rapa HOM05D000113 ORTHO05D006161 8.3e-07 58.9 63 52.4
Carub.0001s3158 Capsella rubella HOM05D000113 ORTHO05D006161 8.3e-07 58.9 147 28.6
AUR62025517 Chenopodium quinoa HOM05D000113 ORTHO05D006161 8.3e-07 58.9 96 41.7
Glyma.03G024000 Glycine max HOM05D000113 ORTHO05D006161 8.3e-07 58.9 62 56.5
Rhsim01G0287700 Rhododendron simsii HOM05D000113 ORTHO05D006161 8.3e-07 58.9 63 54.0
TPR.G9858 Trifolium pratense HOM05D000113 ORTHO05D006161 8.3e-07 58.9 92 40.2
BcaB03g16074 Brassica carinata HOM05D000113 ORTHO05D095878 1.1e-06 58.5 62 53.2
SEGI_22008 Sequoiadendron giganteum HOM05D000113 ORTHO05D006161 1.1e-06 58.5 98 39.8
EL10Ac4g10264 Beta vulgaris HOM05D000113 ORTHO05D006161 1.4e-06 58.2 91 39.6
Nitab4.5_0004367g0140 Nicotiana tabacum HOM05D000113 ORTHO05D006161 1.4e-06 58.2 63 49.2
RcHm_v2.0_Chr2g0168441 Rosa chinensis HOM05D000113 ORTHO05D014811 1.4e-06 58.2 41 70.7
EL10Ac4g10280 Beta vulgaris HOM05D000113 ORTHO05D006161 1.8e-06 57.8 91 39.6
Lsat_1_v5_gn_3_139220 Lactuca sativa HOM05D000113 ORTHO05D006161 2.4e-06 57.4 65 50.8
Medtr4g120070 Medicago truncatula HOM05D000113 ORTHO05D006161 2.4e-06 57.4 92 39.1
Haze_04980 Corylus avellana HOM05D001493 ORTHO05D006161 3.2e-06 57.0 61 50.8
RcHm_v2.0_Chr4g0386411 Rosa chinensis HOM05D000113 ORTHO05D035858 3.2e-06 57.0 44 68.2
Dinv42094 Davidia involucrata HOM05D000113 ORTHO05D006161 4.1e-06 56.6 61 54.1
CANSAT80G0530 Cannabis sativa HOM05D000113 ORTHO05D006161 5.4e-06 56.2 63 52.4
CAN.G986.24 Capsicum annuum HOM05D000113 ORTHO05D000001 5.4e-06 56.2 63 49.2
Lj3A171T9 Lonicera japonica HOM05D000113 ORTHO05D014811 5.4e-06 56.2 85 40.0
Medtr4g023590 Medicago truncatula HOM05D000113 ORTHO05D006161 5.4e-06 56.2 92 38.0
Atru.chr9.1267 Acer truncatum HOM05D000113 ORTHO05D006161 7.0e-06 55.8 63 55.6
BcaC03g17455 Brassica carinata HOM05D000113 ORTHO05D006161 7.0e-06 55.8 86 38.4
Lalb_Chr10g0099391 Lupinus albus HOM05D000113 ORTHO05D006161 7.0e-06 55.8 62 54.8
Phvul.010G084200 Phaseolus vulgaris HOM05D000113 ORTHO05D006161 7.0e-06 55.8 62 54.8
AagrBONN_evm.TU.Sc2ySwM_344.808 Anthoceros agrestis HOM05D000482 ORTHO05D000349 9.2e-06 55.5 90 40.0
MSTRG.21654 Avicennia marina HOM05D000113 ORTHO05D006161 9.2e-06 55.5 63 50.8
Hund05453 Selenicereus undatus HOM05D000113 ORTHO05D006161 9.2e-06 55.5 92 39.1


User provided reference genes

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