Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G3294 Fragaria x ananassa HOM05D006439 ORTHO05D008152 0.0e+00 1927.9 966 100.0
FAN02G3052 Fragaria x ananassa HOM05D006439 ORTHO05D008152 0.0e+00 1683.7 1061 82.9
Prupe.7G115000 Prunus persica HOM05D006439 ORTHO05D008152 0.0e+00 1276.2 993 67.8
MD12G1021400 Malus domestica HOM05D006439 ORTHO05D008152 0.0e+00 1275.4 994 67.7
RcHm_v2.0_Chr3g0472491 Rosa chinensis HOM05D006439 ORTHO05D008152 0.0e+00 1256.5 783 82.5
FvH4_6g18170 Fragaria vesca HOM05D006439 ORTHO05D008152 0.0e+00 1239.2 989 69.0
QL07p039851 Quercus lobata HOM05D006439 ORTHO05D008152 3.1e-304 1048.5 1007 56.4
Cfa016567 Carpinus fangiana HOM05D006439 ORTHO05D008152 7.5e-298 1027.3 1003 57.1
CiPaw.09G010200 Carya illinoinensis HOM05D006439 ORTHO05D008152 4.3e-293 1011.5 1001 55.6
TWI74G0883 Tripterygium wilfordii HOM05D006439 ORTHO05D008152 6.6e-286 987.6 996 53.1
Hma1.2p1_0232F.1_g097640 Hydrangea macrophylla HOM05D006439 ORTHO05D008152 2.3e-283 979.2 999 53.3
Manes.08G022900 Manihot esculenta HOM05D006439 ORTHO05D008152 1.9e-280 969.5 1000 52.8
GSVIVG01033817001 Vitis vinifera HOM05D006439 ORTHO05D008152 8.6e-278 960.7 1036 51.8
Gorai.007G371000 Gossypium raimondii HOM05D006439 ORTHO05D008152 1.4e-275 953.4 1003 51.9
Lalb_Chr01g0018261 Lupinus albus HOM05D006439 ORTHO05D008152 1.2e-263 913.7 1008 50.3
Lj1g0012097 Lotus japonicus HOM05D006439 ORTHO05D008152 1.6e-260 903.3 1003 49.8
Glyma.03G192900 Glycine max HOM05D006439 ORTHO05D008152 1.5e-258 896.7 999 49.3
TPR.G19544 Trifolium pratense HOM05D006439 ORTHO05D008152 3.2e-256 889.0 997 50.7
THA.LOC104823488 Tarenaya hassleriana HOM05D006439 ORTHO05D008152 9.3e-256 887.5 996 48.6
Psat3g034720 Pisum sativum HOM05D006439 ORTHO05D008152 3.5e-255 885.6 999 49.4
Duzib093G0471 Durio zibethinus HOM05D006439 ORTHO05D008152 7.8e-255 884.4 1010 49.6
Phvul.001G188000 Phaseolus vulgaris HOM05D006439 ORTHO05D008152 4.3e-253 878.6 1006 48.6
arahy.Tifrunner.gnm1.ann1.YQ8CLY Arachis hypogaea HOM05D006439 ORTHO05D008152 1.6e-252 876.7 1019 48.4
Gohir.A11G321900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 2.4e-251 872.8 939 51.0
Medtr7g104170 Medicago truncatula HOM05D006439 ORTHO05D008152 3.1e-251 872.5 1000 49.9
arahy.Tifrunner.gnm1.ann1.JQB9X3 Arachis hypogaea HOM05D006439 ORTHO05D008152 4.5e-250 868.6 1028 47.7
Haze_19565 Corylus avellana HOM05D006439 ORTHO05D008152 1.3e-246 857.1 1033 50.1
AT2G36370 Arabidopsis thaliana HOM05D006439 ORTHO05D008152 7.4e-237 824.7 996 46.8
Gohir.D11G340900 Gossypium hirsutum HOM05D006439 ORTHO05D008152 1.6e-236 823.5 880 52.0
AL4G32530 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.6e-234 816.2 993 46.2
Nn2g14057 Nelumbo nucifera HOM05D006439 ORTHO05D008152 8.4e-233 811.2 999 47.3
Migut.L01768 Erythranthe guttata HOM05D006439 ORTHO05D008152 1.1e-229 800.8 967 46.4
HanXRQChr09g0247281 Helianthus annuus HOM05D006439 ORTHO05D008152 4.3e-229 798.9 996 46.5
BcaC02g07604 Brassica carinata HOM05D006439 ORTHO05D008152 4.8e-228 795.4 995 45.7
BcaB06g28933 Brassica carinata HOM05D006439 ORTHO05D008152 1.7e-225 786.9 1030 44.6
BolC4t28018H Brassica oleracea HOM05D006439 ORTHO05D008152 7.2e-224 781.6 999 45.1
Sopen10g035010 Solanum pennellii HOM05D006439 ORTHO05D008152 3.6e-223 779.2 969 45.6
CARHR130670 Cardamine hirsuta HOM05D006439 ORTHO05D008152 1.0e-222 777.7 985 45.1
Thhalv10017885m.g Eutrema salsugineum HOM05D006439 ORTHO05D008152 6.7e-222 775.0 936 45.9
Actinidia31281 Actinidia chinensis HOM05D006439 ORTHO05D008152 1.9e-221 773.5 839 51.0
Solyc10g085600.2 Solanum lycopersicum HOM05D006439 ORTHO05D008152 9.7e-221 771.2 969 45.5
A04p27880 Brassica napus HOM05D006439 ORTHO05D008152 1.4e-219 767.3 941 45.7
BraA04t18280Z Brassica rapa HOM05D006439 ORTHO05D008152 4.1e-219 765.8 942 45.9
SGA_v2.0_scaffold184G39949 Striga asiatica HOM05D006439 ORTHO05D008152 3.8e-217 759.2 1054 42.4
Aa31LG5G21550 Aethionema arabicum HOM05D006439 ORTHO05D008152 8.5e-217 758.1 977 45.4
Cc06_g05440 Coffea canephora HOM05D006439 ORTHO05D008152 1.5e-213 747.3 942 45.4
ECA233G3232 Erigeron canadensis HOM05D006439 ORTHO05D008152 2.6e-213 746.5 967 44.2
PSO384G3820 Papaver somniferum HOM05D006439 ORTHO05D008152 7.7e-210 734.9 967 43.6
Sc07g0005420 Simmondsia chinensis HOM05D006439 ORTHO05D008152 3.8e-209 732.6 886 46.6
Peaxi162Scf00146g00718 Petunia axillaris HOM05D006439 ORTHO05D008152 1.0e-206 724.5 943 43.4
Oeu034357.1 Olea europaea HOM05D006439 ORTHO05D008152 2.0e-205 720.3 1030 41.8
Lsat_1_v5_gn_6_69500 Lactuca sativa HOM05D006439 ORTHO05D008152 6.3e-204 715.3 915 45.0
Ciclev10011131m.g Citrus clementina HOM05D006439 ORTHO05D008152 7.7e-202 708.4 767 52.3
Thecc.05G084500 Theobroma cacao HOM05D006439 ORTHO05D008152 1.2e-197 694.5 678 55.3
Cpa.g.sc5.59 Carica papaya HOM05D006439 ORTHO05D008152 1.8e-195 687.2 968 44.3
Sp4g18660 Schrenkiella parvula HOM05D006439 ORTHO05D008152 2.2e-188 663.7 792 46.7
EL10Ac7g16960 Beta vulgaris HOM05D006439 ORTHO05D008152 4.1e-187 659.4 919 42.3
Ca_08981_v3 Cicer arietinum L. HOM05D006439 ORTHO05D008152 7.7e-186 655.2 794 48.0
SalBow5G0766 Salvia bowleyana HOM05D006439 ORTHO05D008152 1.5e-181 641.0 788 45.3
CAN.G1099.9 Capsicum annuum HOM05D006439 ORTHO05D008152 1.9e-176 624.0 771 46.2
PGR142G3529 Punica granatum HOM05D006439 ORTHO05D008152 2.5e-176 623.6 798 46.1
VMungo1383G0775 Vigna mungo HOM05D006439 ORTHO05D008152 1.6e-175 620.9 698 49.9
vmacro08831 Vaccinium macrocarpon HOM05D006439 ORTHO05D008152 3.5e-170 603.2 630 51.3
AUR62028585 Chenopodium quinoa HOM05D006439 ORTHO05D008152 1.0e-169 601.7 888 39.8
Nitab4.5_0000381g0240 Nicotiana tabacum HOM05D006439 ORTHO05D008152 1.5e-165 587.8 816 41.7
Os01g0968600 Oryza sativa ssp. japonica HOM05D006439 ORTHO05D008152 3.9e-161 573.2 995 36.7
Aqoxy2G01352 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 1.1e-160 571.6 689 46.9
Atru.chr8.1601 Acer truncatum HOM05D006439 ORTHO05D008152 4.3e-160 569.7 505 57.6
DCAR_009146 Daucus carota HOM05D006439 ORTHO05D008152 2.3e-150 537.3 922 37.3
Ah.15g091040 Amaranthus hybridus HOM05D006439 ORTHO05D008152 9.9e-149 531.9 859 39.1
HPP92_005462 Vanilla planifolia HOM05D006439 ORTHO05D008152 4.0e-142 510.0 952 35.8
TAR623G1631 Trochodendron aralioides HOM05D006439 ORTHO05D008152 1.9e-139 501.1 521 52.2
Atru.chr8.1600 Acer truncatum HOM05D006439 ORTHO05D008152 7.9e-130 469.2 492 52.8
Dinv21235 Davidia involucrata HOM05D000103 ORTHO05D008152 4.5e-125 453.4 454 53.3
Carub.0004s1817 Capsella rubella HOM05D006439 ORTHO05D008152 3.2e-123 447.2 501 49.5
PSO801G0048 Papaver somniferum HOM05D006439 ORTHO05D008152 7.1e-115 419.5 785 36.2
Rhsim04G0133900 Rhododendron simsii HOM05D006439 ORTHO05D008152 1.3e-108 398.7 366 55.5
Zm00001eb139990 Zea mays HOM05D006439 ORTHO05D008152 5.3e-102 376.7 616 37.7
Dinv21234 Davidia involucrata HOM05D006439 ORTHO05D008152 3.4e-101 374.0 407 51.1
CSS0038647 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.8e-95 354.4 311 59.2
QL11p044009 Quercus lobata HOM05D006439 ORTHO05D009270 1.1e-91 342.4 562 40.2
Carub.0004s1816 Capsella rubella HOM05D006439 ORTHO05D008152 2.7e-90 337.8 416 46.4
Lj3A1001T30 Lonicera japonica HOM05D006439 ORTHO05D008152 1.5e-75 288.9 245 60.4
Pp3c16_1040 Physcomitrium patens HOM05D006439 ORTHO05D008152 7.2e-75 286.6 1020 27.0
RcHm_v2.0_Chr3g0472501 Rosa chinensis HOM05D006439 ORTHO05D008152 3.6e-74 284.3 150 88.7
MBI17_g23163_MAGBIO Magnolia biondii HOM05D006439 ORTHO05D008152 3.0e-73 281.2 393 43.5
Nitab4.5_0005447g0020 Nicotiana tabacum HOM05D006439 ORTHO05D008152 7.2e-67 260.0 475 34.7
Mapoly0116s0006 Marchantia polymorpha HOM05D006439 ORTHO05D008152 1.0e-65 256.1 970 25.4
Lj3A1001T29 Lonicera japonica HOM05D006439 ORTHO05D008152 8.0e-58 229.9 321 43.3
SMO238G0046 Selaginella moellendorffii HOM05D006439 ORTHO05D008152 8.9e-57 226.5 923 25.7
AagrBONN_evm.TU.Sc2ySwM_117.1948 Anthoceros agrestis HOM05D006439 ORTHO05D008152 2.1e-50 205.3 926 25.5
Ciclev10013912m.g Citrus clementina HOM05D006439 ORTHO05D008152 1.5e-48 199.1 193 54.4
VMungo1383G1144 Vigna mungo HOM05D006439 ORTHO05D008152 2.0e-48 198.7 244 42.2
QL07p039868 Quercus lobata HOM05D006439 ORTHO05D008152 2.6e-48 198.4 218 49.5
FAN09G3024 Fragaria x ananassa HOM05D006439 ORTHO05D008152 1.7e-47 195.7 165 66.1
PGSC0003DMG402008399 Solanum tuberosum HOM05D006439 ORTHO05D008152 2.3e-41 175.3 192 46.9
Lj3A1001G26 Lonicera japonica HOM05D006439 ORTHO05D008152 5.1e-36 157.5 200 45.0
SEGI_26522 Sequoiadendron giganteum HOM05D006439 ORTHO05D000001 9.5e-35 153.3 199 42.7
CAN.G1099.8 Capsicum annuum HOM05D006439 ORTHO05D008152 1.6e-34 152.5 124 56.5
Aqoxy2G01351 Aquilegia oxysepala HOM05D006439 ORTHO05D008152 8.1e-34 150.2 188 43.6
Nitab4.5_0000381g0270 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.1e-33 149.8 133 54.9
AL4G34520 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 2.2e-31 142.1 182 42.3
TAR623G0848 Trochodendron aralioides HOM05D006439 ORTHO05D008152 7.1e-30 137.1 104 62.5
SEGI_31112 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.0e-28 133.3 281 33.8
AUR62028586 Chenopodium quinoa HOM05D006439 ORTHO05D008152 3.0e-28 131.7 95 63.2
Lj3A1001T31 Lonicera japonica HOM05D006439 ORTHO05D008152 1.9e-27 129.0 97 62.9
SEGI_37059 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 9.6e-27 126.7 130 46.2
VMungo1127G2301 Vigna mungo HOM05D006439 ORTHO05D008152 6.2e-26 124.0 190 41.6
CSS0030357 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.8e-25 122.5 173 46.8
CSS0006664 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 2.8e-18 98.6 92 56.5
SEGI_02684 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 1.9e-14 85.9 102 42.2
AUR62033535 Chenopodium quinoa HOM05D006439 ORTHO05D008152 2.4e-14 85.5 82 48.8
SEGI_31670 Sequoiadendron giganteum HOM05D006439 ORTHO05D008152 2.1e-13 82.4 88 46.6
Lj1g0014420 Lotus japonicus HOM05D006439 ORTHO05D046803 3.3e-11 75.1 77 53.2
Glyma.19G193000 Glycine max HOM05D006439 ORTHO05D046803 5.6e-11 74.3 73 49.3
AL4G34560 Arabidopsis lyrata HOM05D006439 ORTHO05D008152 8.1e-10 70.5 137 34.3
Thecc.10G111400 Theobroma cacao HOM05D006439 ORTHO05D008152 5.3e-09 67.8 97 40.2
Lj1g0023385 Lotus japonicus HOM05D006439 ORTHO05D008152 6.9e-09 67.4 74 48.6
Psat6g076200 Pisum sativum HOM05D006439 ORTHO05D008152 3.8e-07 61.6 42 64.3
ECA232G2349 Erigeron canadensis HOM05D006439 ORTHO05D008321 4.9e-07 61.2 65 43.1
Phvul.010G159100 Phaseolus vulgaris HOM05D001219 ORTHO05D001017 6.4e-07 60.8 231 25.5
TPR.G15726 Trifolium pratense HOM05D001219 ORTHO05D001017 6.4e-07 60.8 213 25.4
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 6.4e-07 60.8 379 23.5
CSS0045256 Camellia sinensis var. sinensis HOM05D006439 ORTHO05D008152 1.9e-06 59.3 53 54.7
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 2.5e-06 58.9 211 24.6
Medtr3g074570 Medicago truncatula HOM05D001219 ORTHO05D001017 9.3e-06 57.0 361 21.3


User provided reference genes

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