Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G2672 Fragaria x ananassa HOM05D006821 ORTHO05D008740 6.0e-175 617.5 325 100.0
FvH4_6g02990 Fragaria vesca HOM05D006821 ORTHO05D008740 5.6e-173 610.9 325 99.1
FAN02G2705 Fragaria x ananassa HOM05D006821 ORTHO05D008740 4.8e-172 607.8 325 97.8
FAN09G4578 Fragaria x ananassa HOM05D006821 ORTHO05D008740 8.1e-172 607.1 325 97.8
FAN05G4221 Fragaria x ananassa HOM05D006821 ORTHO05D008740 3.1e-171 605.1 325 97.5
FAN05G1836 Fragaria x ananassa HOM05D006821 ORTHO05D008740 9.0e-171 603.6 325 97.5
RcHm_v2.0_Chr3g0451171 Rosa chinensis HOM05D006821 ORTHO05D008740 9.3e-160 567.0 325 91.1
Prupe.6G342700 Prunus persica HOM05D006821 ORTHO05D008740 8.5e-129 464.2 321 75.4
MD12G1240800 Malus domestica HOM05D006821 ORTHO05D008740 3.7e-124 448.7 324 74.4
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 5.3e-123 444.9 324 72.5
TAR362G0286 Trochodendron aralioides HOM05D006821 ORTHO05D008740 1.8e-115 419.9 326 67.5
TAR633G1083 Trochodendron aralioides HOM05D006821 ORTHO05D008740 2.0e-114 416.4 326 66.3
Manes.09G153500 Manihot esculenta HOM05D006821 ORTHO05D008740 4.2e-112 408.7 325 65.8
Duzib128G0425 Durio zibethinus HOM05D006821 ORTHO05D008740 8.0e-111 404.4 331 64.7
CSS0006427 Camellia sinensis var. sinensis HOM05D006821 ORTHO05D008740 6.8e-110 401.4 329 63.5
Haze_04355 Corylus avellana HOM05D006821 ORTHO05D008740 3.4e-109 399.1 329 62.3
Duzib177G0830 Durio zibethinus HOM05D006821 ORTHO05D008740 9.8e-109 397.5 325 64.6
Manes.08G134300 Manihot esculenta HOM05D006821 ORTHO05D008740 1.1e-107 394.0 328 63.7
Cfa006429 Carpinus fangiana HOM05D006821 ORTHO05D008740 3.1e-107 392.5 329 62.0
Thecc.05G283900 Theobroma cacao HOM05D006821 ORTHO05D008740 5.4e-107 391.7 331 62.2
Actinidia18357 Actinidia chinensis HOM05D006821 ORTHO05D008740 2.0e-106 389.8 325 63.4
Ciclev10001807m.g Citrus clementina HOM05D006821 ORTHO05D008740 4.5e-106 388.7 332 63.3
TWI56G0757 Tripterygium wilfordii HOM05D006821 ORTHO05D008740 7.7e-106 387.9 328 64.0
CANSAT54G2350 Cannabis sativa HOM05D006821 ORTHO05D008740 2.9e-105 386.0 329 63.5
Glyma.03G246900 Glycine max HOM05D006821 ORTHO05D008740 1.5e-104 383.6 324 62.0
Potri.005G052900 Populus trichocarpa HOM05D006821 ORTHO05D008740 4.3e-104 382.1 327 61.8
COL.COLO4_15343 Corchorus olitorius HOM05D006821 ORTHO05D008740 7.3e-104 381.3 331 61.9
Gohir.D13G107900 Gossypium hirsutum HOM05D006821 ORTHO05D008740 2.1e-103 379.8 331 59.2
Nitab4.5_0012228g0010 Nicotiana tabacum HOM05D006821 ORTHO05D008740 2.1e-103 379.8 329 61.7
Gorai.013G120900 Gossypium raimondii HOM05D006821 ORTHO05D008740 2.8e-103 379.4 331 59.2
CiPaw.07G067000 Carya illinoinensis HOM05D006821 ORTHO05D008740 3.6e-103 379.0 323 60.4
PGSC0003DMG400019432 Solanum tuberosum HOM05D006821 ORTHO05D008740 6.1e-103 378.3 327 61.2
Atru.chr2.810 Acer truncatum HOM05D006821 ORTHO05D008740 1.0e-102 377.5 332 60.8
CAN.G134.100 Capsicum annuum HOM05D006821 ORTHO05D008740 1.4e-102 377.1 327 60.9
Hma1.2p1_0195F.1_g084560 Hydrangea macrophylla HOM05D006821 ORTHO05D008740 3.0e-102 375.9 328 61.9
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 4.0e-102 375.6 325 60.6
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 8.9e-102 374.4 325 61.5
Gohir.A13G104500 Gossypium hirsutum HOM05D006821 ORTHO05D008740 1.5e-101 373.6 331 58.6
QL03p025768 Quercus lobata HOM05D006821 ORTHO05D008740 2.6e-101 372.9 386 54.1
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 5.7e-101 371.7 322 63.0
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 9.8e-101 370.9 328 59.8
Cc02_g30600 Coffea canephora HOM05D006821 ORTHO05D008740 1.7e-100 370.2 325 58.8
Peaxi162Scf00282g00328 Petunia axillaris HOM05D006821 ORTHO05D008740 1.1e-99 367.5 326 60.7
Sc20g0000300 Simmondsia chinensis HOM05D006821 ORTHO05D008740 2.4e-99 366.3 330 60.0
Sopen01g041020 Solanum pennellii HOM05D006821 ORTHO05D008740 4.1e-99 365.5 324 60.8
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 5.4e-99 365.2 325 61.2
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 7.0e-99 364.8 325 61.5
Dinv10030 Davidia involucrata HOM05D006821 ORTHO05D008740 7.0e-99 364.8 336 60.7
Solyc01g097350.4 Solanum lycopersicum HOM05D006821 ORTHO05D008740 7.0e-99 364.8 324 60.8
Oeu038441.1 Olea europaea HOM05D006821 ORTHO05D008740 2.0e-98 363.2 327 59.0
Nitab4.5_0001592g0080 Nicotiana tabacum HOM05D006821 ORTHO05D008740 1.7e-97 360.1 343 58.0
Potri.013G040500 Populus trichocarpa HOM05D006821 ORTHO05D008740 1.7e-97 360.1 334 58.4
Aqoxy2G03492 Aquilegia oxysepala HOM05D006821 ORTHO05D008740 1.1e-96 357.5 323 59.1
Sed0012709 Sechium edule HOM05D006821 ORTHO05D008740 4.7e-95 352.1 325 56.9
MBI11_g26138_MAGBIO Magnolia biondii HOM05D006821 ORTHO05D008740 1.0e-94 350.9 327 57.2
Ca_09420_v3 Cicer arietinum L. HOM05D006821 ORTHO05D008740 3.1e-94 349.4 327 57.5
CsaV3_2G004180 Cucumis sativus L. HOM05D006821 ORTHO05D008740 3.1e-94 349.4 327 56.3
Sabra05G0046500 Salix brachista HOM05D006821 ORTHO05D008740 5.2e-94 348.6 380 52.9
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 6.8e-94 348.2 328 57.0
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 3.4e-93 345.9 328 56.4
ClCG02G016590 Citrullus lanatus HOM05D006821 ORTHO05D008740 9.8e-93 344.4 328 54.3
Migut.N01911 Erythranthe guttata HOM05D006821 ORTHO05D008740 1.3e-92 344.0 325 56.9
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 1.3e-92 344.0 325 56.6
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 1.7e-92 343.6 323 57.3
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 4.1e-91 339.0 330 55.5
Psat2g125040 Pisum sativum HOM05D006821 ORTHO05D008740 5.4e-91 338.6 329 56.8
Medtr7g115070 Medicago truncatula HOM05D006821 ORTHO05D008740 1.2e-90 337.4 331 56.8
PSO461G0046 Papaver somniferum HOM05D006821 ORTHO05D008740 1.6e-90 337.0 325 55.4
PSO210G3560 Papaver somniferum HOM05D006821 ORTHO05D008740 2.7e-90 336.3 327 54.7
PSO210G3856 Papaver somniferum HOM05D006821 ORTHO05D008740 2.7e-90 336.3 327 54.7
DCAR_029732 Daucus carota HOM05D006821 ORTHO05D008740 8.6e-89 331.3 328 54.9
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 2.8e-87 326.2 322 55.9
Lj7A490T61 Lonicera japonica HOM05D006821 ORTHO05D008740 2.8e-87 326.2 381 49.9
Thhalv10004570m.g Eutrema salsugineum HOM05D006821 ORTHO05D008740 3.6e-87 325.9 325 53.2
SalBow4G1195 Salvia bowleyana HOM05D006821 ORTHO05D008740 3.6e-87 325.9 329 54.1
SalBow4G2420 Salvia bowleyana HOM05D006821 ORTHO05D008740 3.6e-87 325.9 329 54.1
Sp2g20040 Schrenkiella parvula HOM05D006821 ORTHO05D008740 3.1e-86 322.8 324 52.5
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 2.0e-85 320.1 326 53.4
EL10Ac4g09134 Beta vulgaris HOM05D006821 ORTHO05D008740 9.8e-85 317.8 403 47.1
BraA09t36137Z Brassica rapa HOM05D006821 ORTHO05D008740 4.9e-84 315.5 328 51.5
Carub.0006s2610 Capsella rubella HOM05D006821 ORTHO05D008740 1.9e-83 313.5 329 50.2
A09p04980 Brassica napus HOM05D006821 ORTHO05D008740 5.4e-83 312.0 328 51.2
BcaB04g19632 Brassica carinata HOM05D006821 ORTHO05D008740 9.2e-83 311.2 328 50.6
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 2.7e-82 309.7 331 53.5
Aa31LG11G8550 Aethionema arabicum HOM05D006821 ORTHO05D008740 4.6e-82 308.9 323 49.8
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 4.6e-82 308.9 325 50.8
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 4.6e-82 308.9 325 50.8
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 1.7e-81 307.0 325 50.8
AL6G40810 Arabidopsis lyrata HOM05D006821 ORTHO05D008740 5.6e-80 302.0 326 48.8
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 9.5e-80 301.2 315 49.8
CARHR185340 Cardamine hirsuta HOM05D006821 ORTHO05D008740 4.7e-79 298.9 328 48.8
MELO3C004376.2 Cucumis melo HOM05D006821 ORTHO05D008740 6.2e-79 298.5 327 50.8
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 8.9e-78 294.7 338 51.2
TPR.G6944 Trifolium pratense HOM05D006821 ORTHO05D008740 2.0e-77 293.5 246 61.0
HPP92_024348 Vanilla planifolia HOM05D006821 ORTHO05D008740 3.8e-76 289.3 327 49.2
Cpa.g.sc117.86 Carica papaya HOM05D006821 ORTHO05D008740 2.1e-74 283.5 300 53.7
Dinv04728 Davidia involucrata HOM05D006821 ORTHO05D008740 2.1e-74 283.5 211 68.7
CDE07G0065 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 3.5e-74 282.7 325 48.0
CDE04G3363 Ceratophyllum demersum HOM05D006821 ORTHO05D008740 8.6e-73 278.1 325 47.4
PSO210G3711 Papaver somniferum HOM05D006821 ORTHO05D008740 2.1e-66 256.9 225 60.0
Nn1g02511 Nelumbo nucifera HOM05D006821 ORTHO05D008740 5.3e-62 242.3 213 58.2
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 1.1e-48 198.0 341 37.2
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 4.5e-45 186.0 335 36.7
Ah.07g201960 Amaranthus hybridus HOM05D006821 ORTHO05D008740 3.7e-39 166.4 324 32.7
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 7.6e-37 158.7 332 36.4
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 1.5e-32 144.4 287 32.4
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 5.7e-32 142.5 227 37.9
AagrBONN_evm.TU.Sc2ySwM_228.4145 Anthoceros agrestis HOM05D006821 ORTHO05D008740 1.2e-18 98.2 174 37.4
FAN15G3704 Fragaria x ananassa HOM05D006821 ORTHO05D208196 8.2e-15 85.5 102 55.9
TAR365G0108 Trochodendron aralioides HOM05D006821 ORTHO05D008740 3.1e-14 83.6 142 40.1
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 1.0e-12 78.6 245 26.1
CARHR032970 Cardamine hirsuta HOM05D006821 ORTHO05D008740 1.7e-12 77.8 69 53.6
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.2e-12 77.4 262 27.1
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.8e-12 76.6 262 25.6
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 1.1e-11 75.1 256 25.4
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.5e-11 74.7 223 26.5
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 3.2e-11 73.6 229 26.6
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 3.2e-11 73.6 222 24.3
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 3.2e-11 73.6 247 25.9
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 4.2e-11 73.2 221 24.0
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 5.5e-11 72.8 226 23.9
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 5.5e-11 72.8 223 25.6
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 5.5e-11 72.8 223 25.6
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 7.2e-11 72.4 254 24.8
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 9.4e-11 72.0 226 26.5
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 1.6e-10 71.2 226 26.1
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 1.6e-10 71.2 226 26.1
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 2.1e-10 70.9 226 26.5
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 2.1e-10 70.9 226 25.7
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 2.1e-10 70.9 226 26.5
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 3.6e-10 70.1 256 23.4
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 3.6e-10 70.1 248 26.2
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 1.8e-09 67.8 226 24.3
TPR.G24580 Trifolium pratense HOM05D006821 ORTHO05D008740 2.3e-09 67.4 102 44.1
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 4.0e-09 66.6 222 24.8
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 4.0e-09 66.6 223 22.9
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 4.0e-09 66.6 225 22.2
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 5.2e-09 66.2 222 24.8
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 6.7e-09 65.9 222 23.9
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 8.8e-09 65.5 222 24.8
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 8.8e-09 65.5 225 24.0
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 8.8e-09 65.5 260 23.8
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 1.5e-08 64.7 227 24.2
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 2.0e-08 64.3 230 27.8
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 2.0e-08 64.3 219 22.4
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 2.0e-08 64.3 225 25.3
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 2.0e-08 64.3 222 24.3
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 2.0e-08 64.3 258 23.6
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 2.6e-08 63.9 226 22.6
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 2.6e-08 63.9 249 23.3
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 3.3e-08 63.5 233 24.0
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 3.3e-08 63.5 225 25.3
MELO3C028972.2 Cucumis melo HOM05D006821 ORTHO05D034973 9.7e-08 62.0 89 40.4
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 9.7e-08 62.0 213 21.6
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 1.3e-07 61.6 222 22.5
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 1.7e-07 61.2 255 21.2
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 1.7e-07 61.2 222 24.3
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 2.8e-07 60.5 257 23.0
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 4.8e-07 59.7 224 22.8
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 1.4e-06 58.2 221 23.5
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 2.4e-06 57.4 128 27.3
CARHR215930 Cardamine hirsuta HOM05D006821 ORTHO05D008740 4.1e-06 56.6 68 45.6
Aa31LG9G3980 Aethionema arabicum HOM05D006821 ORTHO05D059654 5.3e-06 56.2 39 61.5
Aa31sc1953G10 Aethionema arabicum HOM05D006821 ORTHO05D059742 5.3e-06 56.2 39 61.5


User provided reference genes

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