Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.9e-49 196.8 102 100.0
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-21 105.1 57 98.2
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.1e-21 105.1 57 98.2
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 7.0e-21 104.0 58 96.6
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 4.3e-18 94.7 59 91.5
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.3e-18 94.7 59 91.5
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.3e-18 94.7 59 91.5
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.3e-18 94.7 59 91.5
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 5.6e-18 94.4 59 89.8
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.3e-18 94.0 59 89.8
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 5.4e-13 77.8 59 74.6
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 7.0e-13 77.4 60 76.7
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.2e-12 76.6 60 76.7
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 2.7e-12 75.5 59 72.9
FAN12G1572 Fragaria x ananassa HOM05D000558 ORTHO05D001857 7.8e-12 73.9 43 83.7
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 1.0e-11 73.6 59 78.0
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 1.3e-11 73.2 61 70.5
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.7e-11 72.8 60 73.3
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 5.0e-11 71.2 59 74.6
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 5.0e-11 71.2 60 70.0
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 6.6e-11 70.9 61 68.9
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 6.6e-11 70.9 59 72.9
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 8.6e-11 70.5 61 68.9
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 8.6e-11 70.5 61 68.9
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 8.6e-11 70.5 61 68.9
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 8.6e-11 70.5 61 68.9
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 8.6e-11 70.5 60 70.0
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 8.6e-11 70.5 61 68.9
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 8.6e-11 70.5 59 71.2
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 8.6e-11 70.5 59 74.6
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 8.6e-11 70.5 60 70.0
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 1.1e-10 70.1 61 70.5
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.1e-10 70.1 61 70.5
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 1.1e-10 70.1 61 68.9
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 1.9e-10 69.3 61 67.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.5e-10 68.9 60 70.0
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 2.5e-10 68.9 61 67.2
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 2.5e-10 68.9 64 65.6
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 2.5e-10 68.9 59 72.9
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 2.5e-10 68.9 61 67.2
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 3.3e-10 68.6 61 65.6
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 3.3e-10 68.6 59 69.5
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 3.3e-10 68.6 60 68.3
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 4.3e-10 68.2 61 67.2
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 4.3e-10 68.2 61 67.2
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.3e-10 67.4 60 68.3
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 7.3e-10 67.4 60 66.7
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 9.5e-10 67.0 60 68.3
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 1.2e-09 66.6 60 66.7
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 2.1e-09 65.9 60 63.3
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 2.8e-09 65.5 60 63.3
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 2.8e-09 65.5 61 65.6
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 2.8e-09 65.5 60 65.0
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 3.6e-09 65.1 60 70.0
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 4.7e-09 64.7 59 66.1
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 6.2e-09 64.3 60 60.0
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 1.8e-08 62.8 80 53.8
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.3e-08 62.4 60 61.7
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.3e-08 62.4 60 61.7
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 2.3e-08 62.4 63 63.5
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 2.3e-08 62.4 58 65.5
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 5.2e-08 61.2 60 60.0
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 6.8e-08 60.8 59 61.0
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 6.8e-08 60.8 60 61.7
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 6.8e-08 60.8 60 61.7
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 6.8e-08 60.8 60 63.3
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 6.8e-08 60.8 62 56.5
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 8.9e-08 60.5 61 59.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 8.9e-08 60.5 73 58.9
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.2e-07 60.1 60 61.7
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 1.5e-07 59.7 59 62.7
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 1.5e-07 59.7 60 58.3
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 1.5e-07 59.7 59 62.7
FAN24G1143 Fragaria x ananassa HOM05D000558 ORTHO05D001857 2.0e-07 59.3 39 71.8
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 2.0e-07 59.3 72 59.7
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 2.6e-07 58.9 59 59.3
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.6e-07 58.9 61 57.4
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 2.6e-07 58.9 59 59.3
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 7.5e-07 57.4 59 61.0
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 9.8e-07 57.0 71 54.9
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 9.8e-07 57.0 60 56.7
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.3e-06 56.6 61 54.1
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 1.3e-06 56.6 61 54.1
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 1.7e-06 56.2 51 66.7
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 2.2e-06 55.8 62 58.1
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 3.7e-06 55.1 58 58.6
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 3.7e-06 55.1 60 56.7
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 4.9e-06 54.7 62 62.9
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 4.9e-06 54.7 50 66.0
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 4.9e-06 54.7 61 52.5
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 8.3e-06 53.9 56 51.8
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 8.3e-06 53.9 60 58.3


User provided reference genes

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