Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.8e-146 522.7 286 100.0
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 5.2e-146 521.2 286 99.7
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.8e-138 493.8 287 95.1
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.3e-133 479.9 286 93.0
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 5.2e-130 468.0 285 85.6
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 1.0e-117 427.2 284 80.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 2.7e-78 296.2 293 55.3
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 7.6e-73 278.1 257 56.0
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 9.9e-73 277.7 288 52.8
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.2e-71 272.7 287 51.2
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 2.3e-69 266.5 260 53.8
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 3.0e-69 266.2 292 46.9
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.1e-68 264.2 257 53.3
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 3.3e-68 262.7 257 54.1
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 9.6e-68 261.2 288 49.3
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-67 260.4 288 49.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 2.1e-67 260.0 291 49.1
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 6.2e-67 258.5 257 52.9
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 8.1e-67 258.1 289 49.1
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.4e-66 256.5 256 52.0
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 5.3e-66 255.4 269 50.6
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 1.2e-65 254.2 289 48.1
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.2e-65 254.2 288 48.3
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 2.0e-65 253.4 290 50.0
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.5e-65 252.3 289 48.1
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.5e-65 252.3 256 51.2
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 4.5e-65 252.3 255 52.5
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.6e-65 251.5 289 48.1
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.3e-64 250.8 288 47.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.9e-64 249.6 256 50.4
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 4.9e-64 248.8 289 48.4
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 6.5e-64 248.4 295 46.8
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 6.5e-64 248.4 256 49.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 8.4e-64 248.1 289 47.8
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.4e-63 247.3 256 52.0
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 2.5e-63 246.5 255 51.4
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 4.2e-63 245.7 286 47.9
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 4.2e-63 245.7 255 51.4
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 4.2e-63 245.7 255 51.4
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 7.1e-63 245.0 254 51.2
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 7.1e-63 245.0 287 47.0
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 7.1e-63 245.0 260 51.2
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 1.2e-62 244.2 254 52.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.2e-62 244.2 288 46.2
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.5e-62 242.7 254 51.2
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.6e-62 242.3 260 50.8
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 1.8e-61 240.4 298 49.7
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 5.1e-61 238.8 289 46.7
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 6.7e-61 238.4 254 50.0
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 8.7e-61 238.0 257 51.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.1e-60 237.7 269 50.9
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-60 237.7 292 46.2
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.5e-60 237.3 288 45.1
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 1.9e-60 236.9 261 47.1
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.5e-60 236.5 247 49.8
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.5e-60 236.5 256 49.2
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 3.3e-60 236.1 286 46.2
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 3.3e-60 236.1 240 52.1
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 5.7e-60 235.3 238 52.1
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.3e-59 234.2 273 48.0
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 2.8e-59 233.0 256 46.5
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 2.8e-59 233.0 254 48.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.3e-59 231.9 267 47.6
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 6.3e-59 231.9 260 46.9
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.1e-58 231.1 273 46.9
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.1e-58 231.1 255 50.2
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.4e-58 230.7 266 49.2
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 1.8e-58 230.3 254 47.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 2.4e-58 229.9 262 51.1
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 4.1e-58 229.2 254 46.1
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 4.1e-58 229.2 289 47.8
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 5.3e-58 228.8 252 49.6
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 5.3e-58 228.8 255 48.2
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 6.9e-58 228.4 256 45.7
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 2.6e-57 226.5 249 49.8
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 2.6e-57 226.5 254 47.2
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 3.4e-57 226.1 253 47.4
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 3.4e-57 226.1 261 46.7
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 4.5e-57 225.7 252 48.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 7.6e-57 224.9 252 48.4
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 7.6e-57 224.9 254 48.0
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.3e-56 224.2 252 48.4
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.3e-56 224.2 256 46.1
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.3e-56 224.2 282 46.1
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 1.7e-56 223.8 252 48.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 2.2e-56 223.4 253 45.1
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 5.0e-56 222.2 272 46.3
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 8.5e-56 221.5 269 47.6
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 8.5e-56 221.5 256 46.5
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 8.5e-56 221.5 256 46.5
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.6e-54 217.2 256 45.3
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.7e-54 216.5 248 46.4
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 3.6e-54 216.1 256 46.1
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 4.6e-54 215.7 229 49.3
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 6.1e-54 215.3 256 44.9
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 6.1e-54 215.3 253 47.8
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.8e-53 213.8 256 47.3
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.3e-53 213.4 184 59.2
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 2.2e-51 206.8 250 47.2
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.2e-51 206.8 254 45.3
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 6.3e-51 205.3 254 44.9
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 5.3e-50 202.2 302 39.7
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 2.0e-49 200.3 256 44.1
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.6e-49 199.9 281 42.0
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 2.2e-48 196.8 254 43.7
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 3.8e-48 196.1 302 37.7
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 1.9e-47 193.7 257 42.4
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 3.2e-47 193.0 390 32.6
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 4.2e-47 192.6 258 41.5
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 8.8e-45 184.9 176 53.4
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-44 184.5 254 42.1
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 1.8e-42 177.2 186 48.9
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 2.4e-42 176.8 202 48.5
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 2.4e-42 176.8 176 51.7
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 2.7e-38 163.3 210 44.8
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 4.7e-38 162.5 206 44.7
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 5.7e-36 155.6 134 58.2
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 9.7e-36 154.8 254 39.0
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.8e-34 150.6 249 38.2
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 1.2e-33 147.9 257 35.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.0e-29 132.9 237 35.9
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.7e-28 129.0 127 53.5
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 8.2e-27 125.2 253 33.6
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 4.1e-26 122.9 242 31.8
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 2.7e-25 120.2 106 54.7
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 3.5e-25 119.8 242 32.2
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 4.5e-25 119.4 184 38.6
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.7e-24 117.5 185 38.9
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 5.0e-24 115.9 152 41.4
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 2.5e-23 113.6 153 39.2
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.8e-21 105.5 169 39.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 3.4e-20 103.2 141 38.3
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.7e-20 102.4 164 38.4
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 9.8e-20 101.7 148 39.2
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 6.3e-19 99.0 330 25.5
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.1e-18 96.7 135 40.7
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 4.1e-18 96.3 88 53.4
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.4e-18 95.9 128 39.1
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 1.0e-16 91.7 291 27.1
CBR_g54313 Chara braunii HOM05D004374 ORTHO05D005430 2.2e-16 90.5 133 38.3
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 8.5e-16 88.6 243 29.6
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.5e-16 88.6 422 23.7
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 9.5e-15 85.1 106 46.2
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 6.8e-13 79.0 144 33.3
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 5.7e-12 75.9 225 27.6
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 4.9e-11 72.8 67 53.7
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 6.3e-11 72.4 111 39.6
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.1e-10 71.6 68 51.5
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.4e-10 71.2 144 31.9
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.4e-10 71.2 144 31.9
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.8e-10 70.9 66 56.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 9.2e-10 68.6 222 27.9
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 3.5e-09 66.6 85 47.1
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 3.8e-08 63.2 63 49.2
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 1.1e-07 61.6 165 33.9
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 1.5e-07 61.2 101 37.6
MCO01G198 Micromonas commoda HOM05D004374 ORTHO05D005430 1.6e-06 57.8 196 27.6


User provided reference genes

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