Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.2e-213 746.5 449 100.0
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 2.6e-208 728.8 450 98.2
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.6e-208 728.8 449 97.1
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 2.9e-204 715.3 447 96.2
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 4.0e-201 704.9 449 81.3
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.2e-186 656.8 452 87.8
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 2.0e-144 516.5 446 75.8
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 3.8e-143 512.3 441 73.9
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.9e-143 511.9 441 73.5
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 1.6e-138 496.9 443 70.0
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 3.6e-138 495.7 446 57.4
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 2.4e-137 493.0 445 65.4
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 5.3e-137 491.9 441 72.8
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 1.2e-136 490.7 443 65.7
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.0e-136 490.0 442 64.5
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.9e-135 486.1 445 67.2
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.6e-133 480.3 448 55.8
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 4.6e-133 478.8 450 64.2
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 6.0e-133 478.4 446 55.8
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 7.9e-133 478.0 431 57.3
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.9e-132 475.7 444 55.9
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 3.9e-132 475.7 444 55.9
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 1.1e-131 474.2 443 54.9
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 7.4e-131 471.5 435 63.7
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 9.6e-131 471.1 432 62.3
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 2.1e-130 469.9 453 62.5
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 4.8e-130 468.8 442 54.8
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 3.1e-129 466.1 456 53.1
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 4.0e-129 465.7 444 53.8
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 1.5e-128 463.8 444 53.6
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 5.8e-128 461.8 444 53.6
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 1.3e-127 460.7 441 61.5
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 2.2e-127 459.9 445 66.1
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 2.9e-127 459.5 442 63.6
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 3.8e-127 459.1 441 63.7
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 6.4e-127 458.4 452 58.8
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 8.4e-127 458.0 443 53.7
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 2.5e-126 456.4 435 54.0
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 5.5e-126 455.3 446 54.9
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 1.2e-125 454.1 440 53.0
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 1.2e-125 454.1 449 60.8
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.2e-125 454.1 442 69.2
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.6e-125 453.8 443 61.2
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 2.7e-125 453.0 440 55.5
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 4.6e-125 452.2 453 61.6
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.3e-124 450.7 446 57.4
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 3.0e-124 449.5 442 62.9
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 3.9e-124 449.1 464 63.6
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 1.1e-123 447.6 448 60.5
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 2.5e-123 446.4 439 65.6
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 4.3e-123 445.7 435 62.3
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 2.8e-122 443.0 447 65.8
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 2.8e-122 443.0 444 60.1
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 3.7e-122 442.6 448 60.0
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 6.2e-122 441.8 440 62.3
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.8e-121 440.3 440 62.0
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 9.0e-121 438.0 441 58.5
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 2.0e-120 436.8 440 62.3
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 2.6e-120 436.4 448 57.1
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 3.8e-119 432.6 400 69.0
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 6.5e-119 431.8 460 50.7
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 3.0e-116 422.9 441 50.8
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 3.9e-116 422.5 441 50.3
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 6.7e-116 421.8 377 70.6
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 1.5e-115 420.6 419 67.3
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 1.9e-115 420.2 447 50.1
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 3.3e-115 419.5 428 66.6
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 4.3e-115 419.1 436 61.7
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 7.4e-115 418.3 439 61.0
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 1.6e-114 417.2 441 50.6
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 4.8e-114 415.6 436 62.4
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 8.2e-114 414.8 491 47.7
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 4.1e-113 412.5 436 60.3
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 6.9e-113 411.8 436 60.1
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 2.6e-112 409.8 436 59.6
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 7.7e-112 408.3 441 62.1
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 1.0e-111 407.9 436 59.9
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 1.3e-111 407.5 427 60.0
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.7e-111 407.1 436 60.1
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 6.5e-111 405.2 420 63.1
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 1.1e-110 404.4 444 50.5
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 2.5e-110 403.3 430 65.1
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 3.2e-110 402.9 436 60.1
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 1.6e-109 400.6 428 64.0
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 1.3e-106 391.0 436 48.9
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.8e-106 389.0 418 50.5
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 4.1e-105 386.0 267 69.3
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 4.1e-105 386.0 454 46.0
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 7.7e-104 381.7 416 48.8
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 1.7e-98 364.0 355 52.1
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.8e-97 360.5 436 56.9
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 4.1e-97 359.4 270 63.7
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 3.0e-92 343.2 445 44.3
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 7.4e-91 338.6 268 60.4
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 7.0e-89 332.0 374 52.7
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 3.8e-87 326.2 243 64.2
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 3.2e-86 323.2 335 56.4
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.1e-81 308.1 267 58.4
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 2.1e-77 293.9 309 68.3
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 1.7e-71 274.2 323 49.2
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 8.3e-66 255.4 327 54.4
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 2.6e-59 233.8 326 41.4
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 2.9e-58 230.3 270 61.5
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 1.2e-56 224.9 393 48.3
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 5.6e-54 216.1 424 46.5
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 1.7e-50 204.5 395 47.1
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.2e-50 204.1 159 61.6
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.9e-49 201.1 398 46.5
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 9.2e-49 198.7 388 41.2
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 1.6e-48 198.0 391 47.1
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 3.1e-44 183.7 217 44.7
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 6.4e-42 176.0 399 43.1
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 8.6e-39 165.6 274 38.3
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 1.5e-38 164.9 114 65.8
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 3.3e-38 163.7 211 62.6
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 5.2e-36 156.4 110 64.5
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 8.4e-34 149.1 103 68.0
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.4e-33 147.5 107 68.2
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.8e-29 134.0 104 64.4
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 4.8e-29 133.3 131 51.9
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 2.4e-28 131.0 106 61.3
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.1e-28 130.6 103 60.2
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 1.2e-24 118.6 202 36.6
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 1.0e-23 115.5 110 52.7
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 3.6e-21 107.1 78 65.4
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 8.1e-21 105.9 234 32.5
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.9e-18 97.4 76 61.8
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.0e-15 87.4 59 66.1
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 2.8e-13 80.9 65 63.1
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 1.0e-10 72.4 44 72.7
RcHm_v2.0_Chr6g0291191 Rosa chinensis HOM05D005949 ORTHO05D006945 1.0e-10 72.4 46 69.6
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 3.8e-10 70.5 53 64.2
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 6.5e-10 69.7 58 50.0
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 1.1e-09 68.9 52 63.5


User provided reference genes

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