Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1634.0 884 100.0
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1630.2 884 99.8
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1615.1 884 99.1
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1582.4 898 96.7
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1580.5 884 97.4
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1570.8 884 97.1
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1357.8 904 82.6
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1296.6 891 79.3
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1279.6 919 77.0
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1260.0 897 73.9
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1253.8 901 73.8
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1246.9 904 73.2
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1243.0 897 72.6
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1238.4 877 74.2
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1237.6 904 72.7
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1237.2 922 73.1
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1234.9 906 72.7
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1234.2 903 72.0
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1227.6 913 72.3
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 893 71.9
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1222.2 902 73.1
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1222.2 899 72.4
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1221.8 900 72.3
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1220.7 899 72.0
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 895 72.1
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1220.3 909 71.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1217.2 911 71.0
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1216.1 887 72.4
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 929 70.2
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1212.2 899 74.7
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1210.7 929 70.1
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 893 70.9
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 893 70.5
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 903 70.7
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 916 69.7
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1197.2 891 70.9
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1196.4 945 68.6
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 903 70.0
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1193.3 898 69.8
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1192.6 927 71.4
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 919 70.1
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 933 68.6
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1189.9 878 71.1
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1188.7 903 69.8
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1181.8 930 69.0
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1179.9 903 71.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 912 69.6
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 917 69.0
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1178.7 937 70.0
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1177.5 899 70.2
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1176.4 911 68.7
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 900 69.3
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1176.0 923 68.9
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1174.5 896 69.0
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1173.7 898 68.8
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 899 70.5
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1171.4 937 67.6
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1165.6 898 68.6
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1163.3 898 71.2
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1162.9 904 68.6
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1161.4 891 69.2
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 897 68.6
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1158.3 919 67.5
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1155.6 735 87.8
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 882 71.3
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 895 68.4
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1151.0 925 66.6
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1150.2 895 68.2
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1149.4 906 68.5
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1148.7 925 67.0
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1147.1 899 65.9
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1143.6 914 67.7
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1143.3 949 65.6
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1141.3 926 68.0
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 940 66.6
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1140.2 940 66.6
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1139.0 895 67.6
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1138.3 921 69.6
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1134.0 898 67.1
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1132.5 876 68.6
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1131.7 941 68.5
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1128.2 909 67.4
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1127.5 935 68.7
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1125.5 889 68.3
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1122.8 907 69.3
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1122.5 925 66.4
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 917 66.7
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1120.9 892 70.6
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1116.3 907 69.3
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1112.8 853 69.3
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1112.1 922 65.0
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1109.7 897 67.7
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1109.7 896 66.5
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1109.0 940 64.3
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1099.7 845 69.7
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1098.2 875 65.3
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1097.4 871 70.1
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1088.9 910 68.5
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1088.6 855 68.1
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1085.1 852 67.7
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1083.2 835 67.3
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1079.3 948 61.8
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1076.2 1002 61.3
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 6.0e-312 1074.3 903 64.2
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 3.0e-311 1071.6 896 63.6
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 2.5e-308 1062.0 899 64.4
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 9.5e-308 1060.1 1016 61.6
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 9.2e-303 1043.5 882 64.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 4.3e-300 1034.6 905 62.9
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 5.6e-300 1034.2 792 67.6
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 2.1e-299 1032.3 874 62.8
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.5e-284 983.0 896 58.9
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 1.9e-271 939.5 736 67.0
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 9.3e-271 937.2 916 58.6
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 4.1e-266 921.8 746 65.4
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 6.5e-264 914.4 730 67.9
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 3.1e-258 895.6 969 54.5
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 2.7e-254 882.5 894 57.2
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 9.7e-252 874.0 610 73.0
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.0e-248 864.0 518 81.9
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.2e-248 862.8 874 53.5
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 7.7e-241 837.8 917 54.9
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.2e-228 797.3 880 52.8
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.8e-224 782.3 700 60.7
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 1.2e-182 644.4 686 54.2
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 2.7e-177 626.7 560 63.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 2.1e-169 600.5 351 82.3
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 4.0e-165 586.3 382 74.6
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 8.7e-160 568.5 387 72.4
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 5.8e-156 555.8 462 65.6
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.2e-154 550.1 540 60.2
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.5e-151 541.2 354 74.3
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.5e-148 531.2 374 70.6
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 2.5e-130 470.7 706 42.9
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 2.0e-124 451.1 286 74.8
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.7e-121 440.7 889 34.9
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 1.4e-112 411.8 1004 33.5
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.3e-110 405.2 525 50.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.6e-105 388.3 452 54.6
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 1.9e-98 364.8 293 64.2
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 4.0e-96 357.1 587 41.7
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.1e-85 322.4 375 56.8
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 1.9e-85 321.6 167 92.2
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 3.5e-84 317.4 1044 28.0
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 1.9e-45 188.7 132 80.3
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 3.0e-43 181.4 102 83.3
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 4.3e-42 177.6 86 100.0
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 2.8e-41 174.9 341 36.7
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.5e-36 157.9 107 68.2
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 4.6e-36 157.5 105 73.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-34 152.5 94 81.9
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 1.6e-33 149.1 94 80.9
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 4.8e-33 147.5 105 70.5
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 1.6e-20 105.9 77 70.1
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 1.1e-18 99.8 61 75.4
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 1.4e-16 92.8 98 62.2
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 7.2e-13 80.5 57 66.7
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.7e-12 77.8 45 77.8
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.5e-10 72.8 53 71.7
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 6.3e-09 67.4 58 60.3
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 1.4e-08 66.2 52 63.5
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 1.6e-07 62.8 41 65.9
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 1.6e-07 62.8 66 43.9


User provided reference genes

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