Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.5e-79 297.0 154 100.0
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.4e-73 279.6 152 94.7
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.8e-73 279.3 152 94.7
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.7e-72 275.4 152 92.8
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 5.4e-65 251.1 133 97.0
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 3.9e-31 138.7 150 53.3
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 3.9e-31 138.7 150 53.3
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 4.3e-30 135.2 150 53.3
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.8e-29 132.5 148 50.0
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 3.6e-29 132.1 147 52.4
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 3.6e-29 132.1 150 50.7
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 4.7e-29 131.7 150 50.7
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.7e-29 131.7 150 50.7
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.7e-29 131.7 150 50.7
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.2e-27 127.1 150 49.3
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.4e-27 125.6 141 54.6
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.4e-27 125.6 145 47.6
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 2.2e-26 122.9 145 47.6
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 3.8e-26 122.1 145 46.2
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 4.9e-26 121.7 149 46.3
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 4.9e-26 121.7 149 46.3
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.4e-26 121.3 147 47.6
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.9e-25 119.8 141 48.9
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.9e-25 119.8 144 51.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.2e-25 118.6 147 46.9
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.2e-25 118.6 132 50.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.4e-25 118.2 137 48.2
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 7.1e-25 117.9 147 46.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 9.3e-25 117.5 141 47.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 9.3e-25 117.5 150 46.7
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.2e-24 117.1 145 48.3
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.2e-24 117.1 144 52.1
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.1e-24 116.3 139 48.2
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.5e-24 115.5 139 47.5
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 3.5e-24 115.5 145 47.6
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 6.0e-24 114.8 145 47.6
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.0e-23 114.0 141 50.4
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.3e-23 113.6 143 50.3
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.3e-23 112.8 151 43.7
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.3e-23 112.8 139 46.8
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 5.1e-23 111.7 146 44.5
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.1e-23 111.7 150 45.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 6.6e-23 111.3 152 46.1
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 8.7e-23 110.9 144 45.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.9e-22 109.8 147 44.2
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.9e-22 109.8 152 45.4
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.5e-22 109.4 137 46.7
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 3.3e-22 109.0 137 46.7
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 5.6e-22 108.2 150 44.7
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 5.6e-22 108.2 152 42.1
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 7.3e-22 107.8 115 51.3
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.3e-21 107.1 147 41.5
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.6e-21 106.7 143 44.8
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.1e-21 106.3 147 42.9
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.8e-21 105.9 147 42.9
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.8e-21 105.9 147 42.9
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 3.6e-21 105.5 128 46.9
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 4.8e-21 105.1 144 45.8
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 6.2e-21 104.8 150 46.0
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 8.1e-21 104.4 145 40.7
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.4e-20 103.6 144 45.8
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.4e-20 103.6 150 42.0
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 1.4e-20 103.6 147 42.2
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 1.8e-20 103.2 152 41.4
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.1e-20 102.4 146 41.1
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 3.1e-20 102.4 151 42.4
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.1e-20 102.4 148 39.2
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 3.1e-20 102.4 143 45.5
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 4.0e-20 102.1 150 45.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.0e-20 102.1 143 45.5
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 4.0e-20 102.1 145 40.0
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 5.3e-20 101.7 141 41.8
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 9.0e-20 100.9 149 41.6
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 9.0e-20 100.9 123 43.9
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.6e-19 99.4 136 42.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.6e-19 99.4 147 41.5
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.4e-19 99.0 145 39.3
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 5.8e-19 98.2 153 39.9
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 7.6e-19 97.8 140 41.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 9.9e-19 97.4 138 42.0
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 1.7e-18 96.7 139 41.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.2e-18 96.3 147 40.8
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 4.9e-18 95.1 139 40.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.9e-18 95.1 133 43.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.9e-18 95.1 147 41.5
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 4.9e-18 95.1 145 40.7
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 6.4e-18 94.7 141 38.3
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 8.4e-18 94.4 146 40.4
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 8.4e-18 94.4 151 35.8
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 8.4e-18 94.4 143 36.4
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.9e-17 93.2 151 35.1
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.9e-17 93.2 151 35.1
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 1.9e-17 93.2 153 35.9
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 2.4e-17 92.8 127 43.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.2e-17 92.4 137 35.0
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 3.2e-17 92.4 144 37.5
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 5.4e-17 91.7 132 40.2
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 5.4e-17 91.7 134 37.3
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.3e-17 90.9 127 41.7
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 9.3e-17 90.9 151 35.1
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 9.3e-17 90.9 142 40.8
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 1.6e-16 90.1 155 37.4
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.5e-16 89.0 122 43.4
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.6e-16 88.6 110 42.7
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.0e-16 88.2 125 39.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 7.9e-16 87.8 148 38.5
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.9e-16 87.8 126 42.1
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 7.9e-16 87.8 128 37.5
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 7.9e-16 87.8 132 37.9
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 1.7e-15 86.7 127 37.0
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 2.3e-15 86.3 104 45.2
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.9e-15 85.5 118 36.4
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 5.1e-15 85.1 143 37.1
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 8.7e-15 84.3 124 38.7
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.9e-14 83.2 114 39.5
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.9e-14 83.2 112 41.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 2.5e-14 82.8 131 37.4
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 5.6e-14 81.6 137 34.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 9.6e-14 80.9 136 38.2
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.3e-13 80.5 140 32.9
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 1.6e-13 80.1 110 39.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 3.6e-13 79.0 120 35.0
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.8e-13 78.6 136 33.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.1e-12 77.4 158 30.4
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 1.4e-12 77.0 127 37.0
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 1.4e-12 77.0 144 34.7
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 2.4e-12 76.3 127 33.9
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 9.0e-12 74.3 126 34.1
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 2.0e-11 73.2 151 33.8
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 5.8e-11 71.6 145 33.1
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 7.6e-11 71.2 141 31.9
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 7.6e-11 71.2 105 38.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 9.9e-11 70.9 144 31.9
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 9.9e-11 70.9 144 31.9
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.3e-10 70.5 144 31.9
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 2.2e-10 69.7 144 31.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.2e-10 69.7 120 35.8
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 2.2e-10 69.7 144 31.2
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.2e-10 69.7 141 30.5
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.9e-10 69.3 123 35.0
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.8e-10 68.9 120 35.0
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 8.4e-10 67.8 59 47.5
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.4e-09 67.0 134 33.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 4.2e-09 65.5 61 47.5
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 7.1e-09 64.7 118 41.5
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 9.3e-09 64.3 126 34.9
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 9.3e-09 64.3 126 34.9
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 1.2e-08 63.9 134 32.8
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.2e-08 63.9 115 30.4
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.1e-08 63.2 104 35.6
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 2.7e-08 62.8 145 30.3
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 2.7e-08 62.8 60 40.0
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 3.5e-08 62.4 64 45.3
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 6.0e-08 61.6 138 30.4
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 6.0e-08 61.6 116 31.0
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 7.9e-08 61.2 89 34.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.9e-08 61.2 64 42.2
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 1.0e-07 60.8 101 40.6
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.0e-07 60.8 147 28.6
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 1.3e-07 60.5 61 42.6
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 2.3e-07 59.7 64 43.8
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.3e-07 59.7 65 44.6
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 5.1e-07 58.5 59 42.4
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 8.7e-07 57.8 65 41.5
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.6e-06 55.1 49 46.9


User provided reference genes

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