Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1937.9 975 100.0
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1874.4 975 97.2
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 0.0e+00 1856.3 975 96.5
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1822.8 1001 93.2
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1709.9 977 89.7
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 0.0e+00 1399.4 985 73.9
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 0.0e+00 1302.3 911 74.9
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1134.8 983 63.5
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1122.5 987 63.0
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 0.0e+00 1120.9 988 62.8
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1115.9 987 61.9
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1112.8 1015 61.1
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 8.9e-307 1057.0 990 59.6
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.9e-305 1052.0 984 58.6
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 3.7e-297 1025.0 988 58.4
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 1.9e-296 1022.7 980 57.9
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 5.4e-296 1021.1 987 57.9
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 1.3e-294 1016.5 987 56.6
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 6.2e-292 1007.7 984 56.8
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 1.8e-291 1006.1 986 57.3
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 5.2e-291 1004.6 988 55.8
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 8.4e-289 997.3 907 60.5
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 1.2e-287 993.4 959 56.2
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 2.7e-287 992.3 989 57.5
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 7.8e-287 990.7 990 55.4
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.9e-285 986.1 987 55.0
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 2.5e-285 985.7 986 55.7
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 2.5e-285 985.7 986 55.7
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 3.3e-285 985.3 991 55.7
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 5.6e-285 984.6 958 57.6
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 1.6e-284 983.0 967 56.8
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.6e-284 981.9 985 56.4
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 1.4e-283 979.9 983 55.2
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 3.1e-283 978.8 989 55.5
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 4.0e-283 978.4 987 56.2
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 2.0e-282 976.1 975 55.6
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.6e-282 975.7 985 56.1
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 4.5e-282 974.9 989 55.6
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 5.8e-282 974.5 987 56.1
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 4.9e-281 971.5 986 55.2
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 8.4e-281 970.7 988 53.9
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 8.4e-281 970.7 987 54.3
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 9.3e-280 967.2 984 54.6
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 1.6e-279 966.5 988 55.6
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 3.0e-278 962.2 928 58.2
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 5.1e-278 961.4 991 55.5
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.1e-277 960.3 951 57.0
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 2.5e-277 959.1 1044 52.8
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 3.3e-277 958.7 985 54.4
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 7.4e-277 957.6 976 54.3
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 2.1e-276 956.1 997 54.7
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 2.1e-276 956.1 968 55.1
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 5.3e-275 951.4 924 56.4
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 1.2e-274 950.3 1072 51.5
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 9.9e-274 947.2 980 54.8
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 7.1e-272 941.0 967 55.3
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 8.7e-270 934.1 851 60.4
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.9e-269 932.9 974 53.3
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 4.3e-269 931.8 987 54.1
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 9.6e-269 930.6 968 53.8
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 6.2e-268 927.9 986 53.9
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 1.1e-267 927.2 983 55.0
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.4e-267 926.8 830 59.3
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.0e-267 925.2 983 54.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 6.9e-267 924.5 956 54.0
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 4.2e-264 915.2 982 54.6
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.6e-263 913.3 989 53.1
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 5.1e-262 908.3 962 52.7
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 1.0e-257 894.0 976 51.6
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 2.2e-257 892.9 978 51.2
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 3.8e-257 892.1 976 51.4
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 5.1e-254 881.7 1008 50.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 1.1e-253 880.6 976 52.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 1.9e-253 879.8 977 50.9
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 6.3e-252 874.8 978 51.1
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 1.5e-250 870.2 949 51.1
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 1.5e-250 870.2 1004 50.8
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 5.9e-250 868.2 984 50.9
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 6.5e-249 864.8 948 51.1
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 7.2e-248 861.3 996 51.5
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 7.9e-247 857.8 978 52.8
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 6.7e-246 854.7 970 50.7
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.5e-245 853.6 898 52.8
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 9.1e-243 844.3 976 50.1
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 1.5e-242 843.6 958 51.9
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.9e-240 836.6 988 50.0
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 5.5e-240 835.1 947 50.3
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 7.9e-239 831.2 958 50.3
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.0e-238 830.9 694 62.0
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 6.7e-238 828.2 961 51.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 8.2e-236 821.2 977 49.4
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.4e-235 820.5 968 49.1
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 1.2e-231 807.4 941 49.6
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 2.7e-231 806.2 669 61.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 6.7e-230 801.6 694 60.2
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 1.7e-228 797.0 939 49.2
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 3.8e-225 785.8 1011 46.4
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 1.0e-222 777.7 1005 47.7
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 1.2e-221 774.2 812 54.3
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 1.9e-216 756.9 693 57.4
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 5.5e-216 755.4 1005 46.2
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 2.4e-211 740.0 829 51.0
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 1.4e-203 714.1 968 45.1
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.5e-200 704.1 633 59.9
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 1.8e-198 697.2 517 71.8
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 5.2e-198 695.7 729 51.9
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 7.5e-197 691.8 748 51.9
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 6.4e-196 688.7 962 45.5
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 1.2e-194 684.5 981 43.6
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.1e-192 677.9 988 43.6
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 6.6e-177 625.5 469 69.7
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 4.2e-171 606.3 727 47.5
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 3.6e-167 593.2 453 67.8
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 2.6e-165 587.0 694 48.4
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 3.8e-156 556.6 580 52.2
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 6.4e-156 555.8 714 46.1
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-153 547.7 718 47.1
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 1.9e-152 544.3 639 46.3
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 5.8e-149 532.7 670 46.1
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 9.3e-147 525.4 672 46.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 3.5e-146 523.5 865 40.1
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.1e-139 501.9 755 42.4
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 1.6e-122 444.9 665 40.8
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 4.4e-120 436.8 707 38.5
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 3.0e-113 414.1 286 77.3
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 5.3e-110 403.3 543 46.6
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 7.2e-107 392.9 291 68.0
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 5.9e-101 373.2 479 44.3
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 3.6e-90 337.4 440 45.2
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 1.7e-87 328.6 170 94.1
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.0e-76 292.7 214 71.0
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 3.2e-70 271.2 218 65.1
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 9.2e-70 269.6 243 60.5
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 1.9e-67 261.9 236 55.9
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.5e-64 252.3 180 71.7
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 1.5e-64 252.3 257 56.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 1.3e-47 196.1 277 46.2
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 1.7e-47 195.7 133 69.9
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 4.9e-47 194.1 132 74.2
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 2.7e-45 188.3 181 55.2
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 4.3e-43 181.0 319 37.3
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 2.2e-39 168.7 114 69.3
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 4.8e-34 151.0 537 26.4
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 2.0e-32 145.6 196 46.4
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 2.8e-26 125.2 303 33.7
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 6.5e-23 114.0 80 71.2
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 4.6e-21 107.8 542 24.2
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 5.7e-19 100.9 355 28.7
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 1.1e-17 96.7 96 50.0
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.6e-13 82.8 47 83.0
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 5.3e-09 67.8 49 63.3
Cre16.g683437 Chlamydomonas reinhardtii HOM05D004501 ORTHO05D004944 9.1e-09 67.0 626 21.7


User provided reference genes

Program Settings