Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.5e-109 399.4 191 100.0
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-109 399.4 191 100.0
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-109 399.4 191 100.0
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-109 399.4 191 100.0
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.5e-109 399.4 191 100.0
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 1.7e-108 396.0 191 99.0
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 3.7e-108 394.8 192 99.5
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 2.4e-107 392.1 192 98.4
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 2.4e-107 392.1 192 98.4
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 7.0e-107 390.6 191 96.3
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 9.2e-107 390.2 191 95.8
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 1.2e-106 389.8 191 95.3
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 1.6e-106 389.4 192 97.4
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 7.8e-106 387.1 191 95.3
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 7.8e-106 387.1 191 95.3
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 7.8e-106 387.1 192 95.3
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 1.7e-105 386.0 193 95.9
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 1.7e-105 386.0 191 95.3
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 2.3e-105 385.6 192 96.4
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 3.0e-105 385.2 191 94.8
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.0e-105 384.4 191 94.8
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 5.0e-105 384.4 191 94.8
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 6.6e-105 384.0 192 95.8
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 8.6e-105 383.6 187 96.8
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 8.6e-105 383.6 191 94.8
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 8.6e-105 383.6 191 94.8
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 8.6e-105 383.6 192 95.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 8.6e-105 383.6 186 97.3
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 8.6e-105 383.6 186 97.3
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 1.5e-104 382.9 191 94.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.5e-104 382.9 191 94.2
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.5e-104 382.9 192 95.3
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.5e-104 382.1 191 95.8
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 3.3e-104 381.7 191 94.8
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 3.3e-104 381.7 186 96.8
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 3.3e-104 381.7 186 96.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 3.3e-104 381.7 186 96.8
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 3.3e-104 381.7 189 95.8
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 3.3e-104 381.7 191 94.8
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 4.3e-104 381.3 191 95.8
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 7.3e-104 380.6 192 95.8
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.2e-103 379.8 192 95.3
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 1.6e-103 379.4 184 98.4
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.6e-103 379.4 186 96.2
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 2.1e-103 379.0 192 95.8
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.8e-103 378.6 192 93.8
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 2.8e-103 378.6 188 95.7
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.6e-103 378.3 192 95.3
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.6e-103 378.3 192 95.3
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.7e-103 377.9 188 95.7
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.7e-103 377.9 188 95.7
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.2
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.4e-102 376.3 186 95.7
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.4e-102 376.3 186 95.7
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.4e-102 376.3 192 93.2
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.4e-102 376.3 184 96.7
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.4e-102 376.3 191 94.8
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.4e-102 376.3 191 94.8
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.8e-102 375.9 185 95.7
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 1.8e-102 375.9 189 94.2
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.8e-102 375.9 191 92.7
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.8e-102 375.9 191 92.7
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 2.3e-102 375.6 186 94.6
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 2.3e-102 375.6 191 94.8
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 2.3e-102 375.6 186 94.6
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 3.1e-102 375.2 188 93.6
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 3.1e-102 375.2 187 94.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 5.2e-102 374.4 191 91.6
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 5.2e-102 374.4 189 93.7
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 6.8e-102 374.0 211 87.7
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 6.8e-102 374.0 188 93.1
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 8.9e-102 373.6 187 94.7
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 8.9e-102 373.6 191 92.1
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 1.2e-101 373.2 188 93.6
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 1.2e-101 373.2 186 94.1
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.2e-101 373.2 193 92.7
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.2e-101 373.2 187 93.6
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.5e-101 372.9 191 91.6
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.6e-101 372.1 193 91.7
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 2.6e-101 372.1 191 90.1
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.6e-101 372.1 191 92.7
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 2.6e-101 372.1 188 92.6
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.4e-101 371.7 191 92.7
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 4.4e-101 371.3 184 94.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 4.4e-101 371.3 189 93.1
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 5.8e-101 370.9 191 91.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 5.8e-101 370.9 189 91.5
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 7.5e-101 370.5 186 93.5
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 9.8e-101 370.2 191 92.7
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 9.8e-101 370.2 193 92.2
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 1.3e-100 369.8 189 91.5
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.3e-100 369.8 191 90.1
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.7e-100 369.4 189 91.0
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.7e-100 369.4 190 91.6
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 2.2e-100 369.0 189 91.5
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 2.2e-100 369.0 189 91.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 2.2e-100 369.0 192 92.7
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 2.9e-100 368.6 183 94.5
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 2.9e-100 368.6 189 91.0
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 2.9e-100 368.6 189 91.0
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 2.9e-100 368.6 189 91.0
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 2.9e-100 368.6 186 91.9
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.7e-100 368.2 191 90.6
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.7e-100 368.2 191 91.6
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 4.9e-100 367.9 187 92.5
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 187 93.6
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 91.0
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 91.9
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 91.9
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 91.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 6.4e-100 367.5 191 90.6
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 8.3e-100 367.1 187 93.0
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 1.4e-99 366.3 185 91.4
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.4e-99 366.3 186 93.0
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 90.5
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 89.4
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 90.5
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 2.4e-99 365.5 189 90.5
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 7.0e-99 364.0 191 90.1
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 7.0e-99 364.0 186 91.9
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 9.2e-99 363.6 189 90.5
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 1.6e-98 362.8 186 92.5
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.0e-98 362.5 201 87.6
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 2.0e-98 362.5 197 87.8
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 4.6e-98 361.3 182 93.4
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.3e-97 359.0 189 88.9
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 2.3e-97 359.0 189 88.9
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 3.0e-97 358.6 258 72.1
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.1e-96 356.7 188 88.8
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 2.8e-95 352.1 185 89.2
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 1.1e-94 350.1 181 90.6
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 3.1e-94 348.6 182 87.4
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 8.9e-94 347.1 189 85.2
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.8e-93 343.6 182 88.5
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 5.4e-91 337.8 187 88.2
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 6.6e-89 330.9 161 96.3
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 1.9e-88 329.3 191 82.2
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 2.5e-88 328.9 183 80.9
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 9.5e-88 327.0 182 84.6
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.6e-82 309.7 184 81.5
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 1.5e-80 303.1 152 90.8
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 9.9e-77 290.4 144 96.5
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.2e-75 285.0 142 93.7
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 3.5e-74 282.0 143 89.5
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 8.7e-73 277.3 137 92.7
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 5.8e-69 264.6 130 92.3
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.1e-67 260.4 136 89.7
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.2e-66 256.9 153 83.7
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 2.7e-66 255.8 165 77.0
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 2.3e-65 252.7 184 71.7
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 3.0e-65 252.3 128 87.5
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 3.9e-65 251.9 187 69.0
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 1.6e-58 229.9 188 53.7
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 1.0e-57 227.3 187 56.1
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 6.9e-54 214.5 166 67.5
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 2.3e-49 199.5 157 66.9
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-45 187.2 90 93.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-44 184.1 115 76.5
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-42 177.2 90 88.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-42 176.4 87 90.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.6e-42 175.6 103 79.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.9e-42 174.5 87 89.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.3e-41 173.7 87 89.7
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.1e-41 171.8 87 89.7
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 88.5
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 88.5
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 4.1e-38 162.2 101 80.2
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-38 161.8 87 87.4
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.7e-37 157.9 157 54.1
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-34 150.2 79 86.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 2.1e-34 149.8 100 76.0
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 8.8e-33 144.4 69 88.4
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 9.7e-32 141.0 70 97.1
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 4.7e-18 95.5 51 96.1
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 1.7e-15 87.0 44 90.9
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 7.0e-14 81.6 55 74.5


User provided reference genes

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