Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1952 Fragaria x ananassa HOM05D003220 ORTHO05D003944 6.1e-103 377.5 190 100.0
FAN08G0739 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.3e-96 355.1 186 96.8
FAN13G0994 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.0e-94 350.1 185 94.6
FAN04G2217 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.8e-94 349.4 184 95.1
FvH4_5g07910 Fragaria vesca HOM05D003220 ORTHO05D003944 4.0e-94 348.2 184 94.6
FAN18G1033 Fragaria x ananassa HOM05D003220 ORTHO05D003944 5.2e-94 347.8 184 94.0
FAN08G0954 Fragaria x ananassa HOM05D003220 ORTHO05D003944 1.2e-93 346.7 184 94.0
FvH4_5g30030 Fragaria vesca HOM05D003220 ORTHO05D003944 2.0e-93 345.9 191 93.2
FAN18G3924 Fragaria x ananassa HOM05D003220 ORTHO05D003944 3.2e-91 338.6 191 92.1
RcHm_v2.0_Chr7g0190471 Rosa chinensis HOM05D003220 ORTHO05D003944 7.3e-88 327.4 181 90.6
RcHm_v2.0_Chr7g0190481 Rosa chinensis HOM05D003220 ORTHO05D003944 9.5e-88 327.0 181 90.1
CSS0036065 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 4.9e-84 314.7 180 86.7
MD06G1144100 Malus domestica HOM05D003220 ORTHO05D003944 4.9e-84 314.7 179 87.2
Prupe.5G153100 Prunus persica HOM05D003220 ORTHO05D003944 2.4e-83 312.4 179 86.6
MD14G1159300 Malus domestica HOM05D003220 ORTHO05D003944 4.1e-83 311.6 177 87.0
TAR629G1627 Trochodendron aralioides HOM05D003220 ORTHO05D003944 5.4e-83 311.2 181 84.5
Atru.chr9.1087 Acer truncatum HOM05D003220 ORTHO05D003944 9.2e-83 310.5 181 84.5
CSS0002367 Camellia sinensis var. sinensis HOM05D003220 ORTHO05D003944 1.2e-82 310.1 180 84.4
MD06G1144000 Malus domestica HOM05D003220 ORTHO05D003944 1.2e-82 310.1 179 85.5
Prupe.7G058500 Prunus persica HOM05D003220 ORTHO05D003944 1.2e-82 310.1 179 86.6
PSO478G5055 Papaver somniferum HOM05D003220 ORTHO05D003944 1.6e-82 309.7 181 85.1
PSO782G5387 Papaver somniferum HOM05D003220 ORTHO05D003944 1.6e-82 309.7 181 85.1
Glyma.05G236000 Glycine max HOM05D003220 ORTHO05D003944 2.7e-82 308.9 181 84.5
Ah.03g136360 Amaranthus hybridus HOM05D003220 ORTHO05D003944 3.5e-82 308.5 181 82.9
MBI08_g11776_MAGBIO Magnolia biondii HOM05D003220 ORTHO05D003944 3.5e-82 308.5 181 83.4
Hund03392 Selenicereus undatus HOM05D003220 ORTHO05D003944 3.5e-82 308.5 181 83.4
CANSAT80G2734 Cannabis sativa HOM05D003220 ORTHO05D003944 4.6e-82 308.1 181 83.4
TAR371G0289 Trochodendron aralioides HOM05D003220 ORTHO05D003944 4.6e-82 308.1 181 83.4
Dinv04868 Davidia involucrata HOM05D003220 ORTHO05D003944 6.0e-82 307.8 181 83.4
Glyma.05G046700 Glycine max HOM05D003220 ORTHO05D003944 6.0e-82 307.8 181 83.4
Medtr5g042880 Medicago truncatula HOM05D003220 ORTHO05D003944 6.0e-82 307.8 181 83.4
COL.COLO4_28080 Corchorus olitorius HOM05D003220 ORTHO05D003944 7.8e-82 307.4 181 84.0
EL10Ac2g04001 Beta vulgaris HOM05D003220 ORTHO05D003944 1.0e-81 307.0 180 83.3
Dinv11156 Davidia involucrata HOM05D003220 ORTHO05D003944 1.0e-81 307.0 181 82.9
Glyma.05G046900 Glycine max HOM05D003220 ORTHO05D003944 1.0e-81 307.0 180 83.9
VMungo1215G0590 Vigna mungo HOM05D003220 ORTHO05D003944 1.0e-81 307.0 181 83.4
HanXRQChr05g0155091 Helianthus annuus HOM05D003220 ORTHO05D003944 1.3e-81 306.6 181 84.0
HanXRQChr08g0229301 Helianthus annuus HOM05D003220 ORTHO05D003944 1.3e-81 306.6 181 84.0
Duzib205G1890 Durio zibethinus HOM05D003220 ORTHO05D003944 2.3e-81 305.8 181 84.0
Lalb_Chr07g0183341 Lupinus albus HOM05D003220 ORTHO05D003944 3.0e-81 305.4 181 82.9
Thecc.03G126500 Theobroma cacao HOM05D003220 ORTHO05D003944 3.0e-81 305.4 181 83.4
TWI38G0393 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 3.9e-81 305.1 180 83.3
DCAR_007481 Daucus carota HOM05D003220 ORTHO05D003944 5.0e-81 304.7 181 82.3
Hma1.2p1_1439F.1_g283510 Hydrangea macrophylla HOM05D003220 ORTHO05D003944 5.0e-81 304.7 181 82.3
Solyc05g012270.3 Solanum lycopersicum HOM05D003220 ORTHO05D003944 5.0e-81 304.7 181 82.3
Sopen05g007100 Solanum pennellii HOM05D003220 ORTHO05D003944 5.0e-81 304.7 181 82.3
TPR.G30011 Trifolium pratense HOM05D003220 ORTHO05D003944 5.0e-81 304.7 181 82.3
Lalb_Chr13g0297361 Lupinus albus HOM05D003220 ORTHO05D003944 6.6e-81 304.3 181 82.3
Phvul.003G209832 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 6.6e-81 304.3 181 82.9
Sed0014346 Sechium edule HOM05D003220 ORTHO05D003944 6.6e-81 304.3 181 82.3
Glyma.17G128600 Glycine max HOM05D003220 ORTHO05D003944 8.6e-81 303.9 181 82.3
Peaxi162Scf00175g00120 Petunia axillaris HOM05D003220 ORTHO05D003944 8.6e-81 303.9 181 82.3
TWI63G1463 Tripterygium wilfordii HOM05D003220 ORTHO05D003944 1.1e-80 303.5 186 81.7
unitig_750.g28437 Utricularia gibba HOM05D003220 ORTHO05D003944 1.1e-80 303.5 181 82.3
CANSAT64G0212 Cannabis sativa HOM05D003220 ORTHO05D003944 1.5e-80 303.1 177 84.2
Migut.N00934 Erythranthe guttata HOM05D003220 ORTHO05D003944 1.5e-80 303.1 179 82.1
PGSC0003DMG400028317 Solanum tuberosum HOM05D003220 ORTHO05D003944 1.5e-80 303.1 181 82.3
Phvul.003G209766 Phaseolus vulgaris HOM05D003220 ORTHO05D003944 1.9e-80 302.8 181 82.3
Hund19502 Selenicereus undatus HOM05D003220 ORTHO05D003944 1.9e-80 302.8 180 82.2
arahy.Tifrunner.gnm1.ann1.HUK63J Arachis hypogaea HOM05D003220 ORTHO05D003944 2.5e-80 302.4 181 81.2
Duzib068G0624 Durio zibethinus HOM05D003220 ORTHO05D003944 2.5e-80 302.4 181 81.8
ECA246G3064 Erigeron canadensis HOM05D003220 ORTHO05D003944 2.5e-80 302.4 181 82.3
SGA_v2.0_scaffold198G41113 Striga asiatica HOM05D003220 ORTHO05D003944 2.5e-80 302.4 180 81.7
SGA_v2.0_scaffold334G49089 Striga asiatica HOM05D003220 ORTHO05D003944 2.5e-80 302.4 181 80.1
arahy.Tifrunner.gnm1.ann1.VD0ABX Arachis hypogaea HOM05D003220 ORTHO05D003944 3.3e-80 302.0 181 81.2
AUR62009263 Chenopodium quinoa HOM05D003220 ORTHO05D003944 3.3e-80 302.0 181 81.2
Ciclev10019860m.g Citrus clementina HOM05D003220 ORTHO05D003944 3.3e-80 302.0 180 83.3
CAN.G1528.7 Capsicum annuum HOM05D003220 ORTHO05D003944 5.6e-80 301.2 181 81.8
Eucgr.K02738 Eucalyptus grandis HOM05D003220 ORTHO05D003944 5.6e-80 301.2 181 81.2
Aa31LG7G11010 Aethionema arabicum HOM05D003220 ORTHO05D003944 7.3e-80 300.8 184 79.9
CDE09G1413 Ceratophyllum demersum HOM05D003220 ORTHO05D003944 7.3e-80 300.8 180 82.2
AUR62042443 Chenopodium quinoa HOM05D003220 ORTHO05D003944 7.3e-80 300.8 181 81.2
Ca_00914_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 9.5e-80 300.4 181 80.7
Ca_29978_v3 Cicer arietinum L. HOM05D003220 ORTHO05D003944 9.5e-80 300.4 181 80.7
Rhsim08G0188400 Rhododendron simsii HOM05D003220 ORTHO05D003944 9.5e-80 300.4 183 80.3
SGA_v2.0_scaffold376G50300 Striga asiatica HOM05D003220 ORTHO05D001798 1.2e-79 300.1 181 79.0
CsaV3_1G009560 Cucumis sativus L. HOM05D003220 ORTHO05D003944 1.6e-79 299.7 179 83.2
Lsat_1_v5_gn_5_13561 Lactuca sativa HOM05D003220 ORTHO05D003944 1.6e-79 299.7 181 82.3
Manes.03G085300 Manihot esculenta HOM05D003220 ORTHO05D003944 1.6e-79 299.7 181 81.2
Potri.010G239000 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.6e-79 299.7 181 81.8
QL10p004209 Quercus lobata HOM05D003220 ORTHO05D003944 1.6e-79 299.7 181 81.2
Sed0017817 Sechium edule HOM05D003220 ORTHO05D003944 1.6e-79 299.7 181 80.7
Lalb_Chr06g0172311 Lupinus albus HOM05D003220 ORTHO05D003944 2.1e-79 299.3 173 84.4
SalBow2G0412 Salvia bowleyana HOM05D003220 ORTHO05D003944 2.1e-79 299.3 181 81.2
Aqoxy6G02806 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 2.8e-79 298.9 181 79.0
Aqoxy7G03930 Aquilegia oxysepala HOM05D003220 ORTHO05D003944 2.8e-79 298.9 181 79.0
PGR004G0659 Punica granatum HOM05D003220 ORTHO05D003944 2.8e-79 298.9 180 80.6
MELO3C026229.2 Cucumis melo HOM05D003220 ORTHO05D003944 3.6e-79 298.5 181 81.2
MSTRG.18081 Avicennia marina HOM05D003220 ORTHO05D003944 6.2e-79 297.7 179 81.0
Oeu054655.1 Olea europaea HOM05D003220 ORTHO05D003944 6.2e-79 297.7 185 77.8
QL10p004159 Quercus lobata HOM05D003220 ORTHO05D003944 6.2e-79 297.7 181 80.7
MSTRG.21708 Avicennia marina HOM05D003220 ORTHO05D003944 8.1e-79 297.4 180 80.6
Potri.008G020200 Populus trichocarpa HOM05D003220 ORTHO05D003944 1.1e-78 297.0 181 81.2
ClCG06G017780 Citrullus lanatus HOM05D003220 ORTHO05D003944 1.8e-78 296.2 181 81.2
ECA247G1256 Erigeron canadensis HOM05D003220 ORTHO05D003944 2.3e-78 295.8 181 81.8
Gohir.A07G051900 Gossypium hirsutum HOM05D003220 ORTHO05D003944 2.3e-78 295.8 181 81.2
Gorai.001G059900 Gossypium raimondii HOM05D003220 ORTHO05D003944 2.3e-78 295.8 181 81.2
THA.LOC104825013 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 2.3e-78 295.8 181 79.6
ClCG03G003670 Citrullus lanatus HOM05D003220 ORTHO05D003944 3.1e-78 295.4 179 82.1
Medtr4g103680 Medicago truncatula HOM05D003220 ORTHO05D003944 3.1e-78 295.4 181 79.6
THA.LOC104811595 Tarenaya hassleriana HOM05D003220 ORTHO05D003944 3.1e-78 295.4 181 79.0
Carub.0007s1622 Capsella rubella HOM05D003220 ORTHO05D003944 4.0e-78 295.0 181 79.6
Cc00_g12840 Coffea canephora HOM05D003220 ORTHO05D003944 4.0e-78 295.0 177 81.9
Os12g0235800 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 4.0e-78 295.0 181 78.5
ECA247G3880 Erigeron canadensis HOM05D003220 ORTHO05D003944 5.2e-78 294.7 181 81.2
Lj4g0002027 Lotus japonicus HOM05D003220 ORTHO05D003944 5.2e-78 294.7 181 79.0
Nitab4.5_0001487g0130 Nicotiana tabacum HOM05D003220 ORTHO05D003944 5.2e-78 294.7 174 82.8
Lj2g0018966 Lotus japonicus HOM05D003220 ORTHO05D003944 6.8e-78 294.3 181 79.6
CsaV3_1G000670 Cucumis sativus L. HOM05D003220 ORTHO05D003944 8.9e-78 293.9 181 80.7
Migut.D00060 Erythranthe guttata HOM05D003220 ORTHO05D003944 8.9e-78 293.9 174 81.6
Lj9C477T17 Lonicera japonica HOM05D003220 ORTHO05D003944 8.9e-78 293.9 181 78.5
Gohir.D07G056400 Gossypium hirsutum HOM05D003220 ORTHO05D003944 1.2e-77 293.5 181 80.7
HPP92_001246 Vanilla planifolia HOM05D003220 ORTHO05D003944 1.2e-77 293.5 184 77.2
Nitab4.5_0000231g0280 Nicotiana tabacum HOM05D003220 ORTHO05D003944 1.5e-77 293.1 178 80.9
Zm00001eb411740 Zea mays HOM05D003220 ORTHO05D003944 1.5e-77 293.1 181 77.3
AT4G24830 Arabidopsis thaliana HOM05D003220 ORTHO05D003944 2.0e-77 292.7 181 78.5
HPP92_001262 Vanilla planifolia HOM05D003220 ORTHO05D003944 2.0e-77 292.7 183 77.6
CiPaw.11G009400 Carya illinoinensis HOM05D003220 ORTHO05D003944 5.8e-77 291.2 181 79.0
AL7G28350 Arabidopsis lyrata HOM05D003220 ORTHO05D003944 9.8e-77 290.4 181 78.5
Haze_24344 Corylus avellana HOM05D003220 ORTHO05D003944 9.8e-77 290.4 181 77.3
C01p20130 Brassica napus HOM05D003220 ORTHO05D003944 1.3e-76 290.0 181 77.9
BolC1t01942H Brassica oleracea HOM05D003220 ORTHO05D003944 1.3e-76 290.0 181 77.9
Sp7g22820 Schrenkiella parvula HOM05D003220 ORTHO05D003944 1.3e-76 290.0 181 77.9
vmacro18315 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 1.3e-76 290.0 183 76.5
Thhalv10025000m.g Eutrema salsugineum HOM05D003220 ORTHO05D003944 1.7e-76 289.7 181 77.9
A01p16140 Brassica napus HOM05D003220 ORTHO05D003944 2.2e-76 289.3 181 77.9
BraA01t01550Z Brassica rapa HOM05D003220 ORTHO05D003944 2.2e-76 289.3 181 77.9
ATR1149G068 Amborella trichopoda HOM05D003220 ORTHO05D003944 2.9e-76 288.9 180 78.9
BcaC06g32854 Brassica carinata HOM05D003220 ORTHO05D003944 2.9e-76 288.9 181 77.3
BcaNung07242 Brassica carinata HOM05D003220 ORTHO05D003944 2.9e-76 288.9 181 77.3
A03p55590 Brassica napus HOM05D003220 ORTHO05D003944 2.9e-76 288.9 181 77.3
C07p53830 Brassica napus HOM05D003220 ORTHO05D003944 2.9e-76 288.9 181 77.3
BraA03t14626Z Brassica rapa HOM05D003220 ORTHO05D003944 2.9e-76 288.9 181 77.3
Sc10g0010420 Simmondsia chinensis HOM05D003220 ORTHO05D003944 2.9e-76 288.9 180 76.7
vmacro05131 Vaccinium macrocarpon HOM05D003220 ORTHO05D003944 2.9e-76 288.9 181 76.8
Sc10g0008710 Simmondsia chinensis HOM05D003220 ORTHO05D003944 3.7e-76 288.5 180 77.8
MELO3C002352.2 Cucumis melo HOM05D003220 ORTHO05D003944 1.1e-75 287.0 181 77.9
Lj1g0011038 Lotus japonicus HOM05D003220 ORTHO05D003944 1.1e-75 287.0 181 74.6
Lj1g0011796 Lotus japonicus HOM05D003220 ORTHO05D003944 1.1e-75 287.0 181 74.0
Lj1g0021098 Lotus japonicus HOM05D003220 ORTHO05D003944 1.1e-75 287.0 181 74.0
Medtr3g088970 Medicago truncatula HOM05D003220 ORTHO05D003944 2.4e-75 285.8 181 74.0
CiPaw.12G040800 Carya illinoinensis HOM05D003220 ORTHO05D003944 5.4e-75 284.6 180 77.8
SEGI_40301 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 5.4e-75 284.6 179 78.8
ClCG03G003660 Citrullus lanatus HOM05D003220 ORTHO05D003944 7.1e-75 284.3 176 79.0
CARHR232250 Cardamine hirsuta HOM05D003220 ORTHO05D003944 9.2e-75 283.9 181 76.8
Lj1g0022826 Lotus japonicus HOM05D003220 ORTHO05D003944 1.2e-74 283.5 181 73.5
Sed0000451 Sechium edule HOM05D003220 ORTHO05D003944 2.1e-74 282.7 181 77.3
CsaV3_1G009540 Cucumis sativus L. HOM05D003220 ORTHO05D003944 2.7e-74 282.3 181 75.1
TPR.G26144 Trifolium pratense HOM05D003220 ORTHO05D003944 3.5e-74 282.0 181 72.4
SEGI_19712 Sequoiadendron giganteum HOM05D003220 ORTHO05D003944 1.0e-73 280.4 179 77.7
AagrBONN_evm.TU.Sc2ySwM_228.4817 Anthoceros agrestis HOM05D003220 ORTHO05D003944 6.6e-73 277.7 184 74.5
Haze_07237 Corylus avellana HOM05D003220 ORTHO05D003944 6.6e-73 277.7 180 73.9
Cfa018844 Carpinus fangiana HOM05D003220 ORTHO05D003944 1.5e-72 276.6 180 73.9
Psat5g139800 Pisum sativum HOM05D003220 ORTHO05D003944 5.6e-72 274.6 181 70.7
Duzib084G0962 Durio zibethinus HOM05D003220 ORTHO05D003944 7.3e-72 274.2 172 80.8
Mapoly0038s0028 Marchantia polymorpha HOM05D003220 ORTHO05D003944 2.8e-71 272.3 182 73.6
SMO356G0518 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 3.6e-71 271.9 183 74.3
Pp3c1_33150 Physcomitrium patens HOM05D003220 ORTHO05D003944 2.0e-69 266.2 179 74.3
CBR_g61477 Chara braunii HOM05D003220 ORTHO05D003944 4.1e-67 258.5 183 69.4
Actinidia25590 Actinidia chinensis HOM05D003220 ORTHO05D003944 9.9e-61 237.3 180 69.4
Medtr3g088940 Medicago truncatula HOM05D003220 ORTHO05D003944 6.9e-54 214.5 140 72.9
Pp3c12_4480 Physcomitrium patens HOM05D003220 ORTHO05D003944 4.2e-51 205.3 179 60.9
Glyma.08G043400 Glycine max HOM05D003220 ORTHO05D003944 9.3e-51 204.1 128 79.7
Os11g0303050 Oryza sativa ssp. japonica HOM05D003220 ORTHO05D003944 1.5e-48 196.8 127 74.0
PRCOL_00001450 Prasinoderma coloniale HOM05D003220 ORTHO05D003944 1.5e-48 196.8 185 55.1
Cre09.g416050 Chlamydomonas reinhardtii HOM05D003220 ORTHO05D003944 1.1e-46 190.7 173 54.3
Lj6g0003196 Lotus japonicus HOM05D003220 ORTHO05D003944 2.0e-45 186.4 148 66.2
FvH4_5g06920 Fragaria vesca HOM05D003220 ORTHO05D003944 1.4e-43 180.3 133 71.4
vmacro19215 Vaccinium macrocarpon HOM05D002332 ORTHO05D002509 1.8e-41 173.3 175 52.6
SMO356G0112 Selaginella moellendorffii HOM05D003220 ORTHO05D003944 1.6e-39 166.8 112 73.2
GSVIVG01008510001 Vitis vinifera HOM05D003220 ORTHO05D003944 6.5e-36 154.8 90 85.6
Cfa022737 Carpinus fangiana HOM05D003220 ORTHO05D003944 9.7e-24 114.4 178 36.0
Psat0s3176g0120 Pisum sativum HOM05D003220 ORTHO05D003944 5.3e-22 108.6 149 51.7
BcaC07g38166 Brassica carinata HOM05D003220 ORTHO05D003944 3.3e-16 89.4 83 61.4
C07p53810 Brassica napus HOM05D003220 ORTHO05D003944 7.7e-13 78.2 45 80.0
BolC7t45871H Brassica oleracea HOM05D003220 ORTHO05D003944 7.7e-13 78.2 45 80.0
Psat4g065240 Pisum sativum HOM05D003220 ORTHO05D003944 1.1e-06 57.8 117 40.2


User provided reference genes

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