Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1226.1 629 100.0
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1208.7 629 99.0
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1181.8 634 96.5
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1174.5 655 94.0
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 0.0e+00 1150.2 682 90.0
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1150.2 638 93.9
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 5.0e-303 1043.9 637 84.0
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 7.1e-281 970.3 644 78.4
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 1.7e-279 965.7 646 78.0
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 2.1e-277 958.7 641 77.5
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 2.4e-273 945.3 636 77.5
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 5.4e-273 944.1 640 77.2
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 1.6e-269 932.6 637 75.7
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 2.0e-267 925.6 635 75.9
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 5.8e-267 924.1 642 74.9
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 2.2e-266 922.2 653 74.9
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 3.8e-266 921.4 639 75.3
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 4.2e-265 917.9 604 76.3
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 9.3e-265 916.8 636 76.1
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 1.6e-264 916.0 642 74.1
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 1.3e-263 912.9 637 75.7
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 1.3e-263 912.9 647 74.5
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 5.3e-260 901.0 658 72.5
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 2.6e-259 898.7 634 74.0
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 4.5e-259 897.9 636 73.7
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 7.6e-259 897.1 644 73.9
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 1.7e-258 896.0 639 72.8
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.8e-258 894.8 636 72.6
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 4.9e-258 894.4 643 72.5
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 4.9e-258 894.4 644 73.6
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 3.2e-257 891.7 652 72.4
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 7.1e-257 890.6 652 72.4
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 9.3e-257 890.2 639 74.2
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 6.0e-256 887.5 634 74.1
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 7.9e-256 887.1 647 73.0
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 1.3e-255 886.3 642 73.7
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 5.1e-255 884.4 639 71.8
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.3e-253 879.8 642 71.5
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 1.6e-253 879.4 642 71.5
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 2.1e-253 879.0 640 71.4
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 1.1e-252 876.7 644 71.3
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 2.4e-252 875.5 646 71.2
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 3.4e-251 871.7 638 71.9
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 9.3e-249 863.6 632 71.5
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 7.9e-248 860.5 632 71.2
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 3.9e-247 858.2 637 70.3
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.1e-246 856.7 637 71.9
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 9.6e-246 853.6 644 70.2
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 2.8e-245 852.0 636 70.4
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.8e-245 852.0 652 69.8
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 3.7e-245 851.7 644 72.0
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 3.7e-245 851.7 647 68.9
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 1.4e-244 849.7 644 71.9
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 1.4e-241 839.7 635 68.7
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.9e-238 829.3 639 70.0
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 1.1e-236 823.5 646 68.4
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 1.5e-235 819.7 731 61.7
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 2.6e-235 818.9 629 69.0
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 7.9e-232 807.4 617 68.7
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 9.1e-228 793.9 634 65.9
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 2.0e-227 792.7 645 66.4
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 6.5e-226 787.7 646 65.5
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 2.5e-225 785.8 646 65.2
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 3.2e-225 785.4 642 65.9
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 3.2e-225 785.4 649 65.5
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 9.4e-225 783.9 634 65.5
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 1.6e-224 783.1 631 65.6
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 1.0e-223 780.4 657 64.7
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 8.8e-223 777.3 635 66.0
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.5e-222 776.5 643 66.4
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 3.3e-222 775.4 639 64.3
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 3.3e-222 775.4 646 65.3
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 4.8e-221 771.5 640 63.9
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 4.8e-221 771.5 640 63.9
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 7.0e-220 767.7 635 65.2
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 2.2e-218 762.7 663 62.0
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 5.0e-218 761.5 633 63.0
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 2.3e-215 752.7 638 62.4
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 7.5e-214 747.7 636 62.6
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 2.8e-213 745.7 643 62.8
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 6.3e-213 744.6 650 64.0
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 5.5e-209 731.5 611 63.7
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.8e-207 726.5 637 61.5
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 3.4e-206 722.2 393 89.6
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 7.5e-206 721.1 397 88.7
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 2.2e-205 719.5 393 89.1
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 7.7e-203 711.1 631 60.9
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 3.8e-202 708.8 571 66.2
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 5.5e-201 704.9 630 60.5
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 5.2e-199 698.4 562 65.8
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 5.7e-190 668.3 635 59.1
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 2.2e-189 666.4 628 58.8
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.8e-184 649.4 651 57.3
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 2.2e-181 639.8 631 57.7
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.5e-177 627.1 643 54.7
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 2.5e-177 626.3 696 50.1
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 6.6e-170 601.7 500 62.4
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.9e-169 600.1 718 47.9
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 6.8e-167 591.7 525 61.3
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 2.9e-165 586.3 634 49.5
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 2.1e-163 580.1 324 85.8
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 3.0e-162 576.2 660 48.8
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 8.6e-162 574.7 631 52.1
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.3e-161 571.6 622 51.9
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.0e-159 565.8 631 51.5
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.8e-158 562.0 622 51.3
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.2e-155 554.3 450 67.6
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.2e-147 527.7 521 53.4
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 6.5e-133 478.8 634 48.6
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 2.2e-120 437.2 450 54.7
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 3.7e-88 330.1 182 86.3
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.1e-79 300.1 270 57.4
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 6.4e-72 276.2 281 60.1
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 3.2e-71 273.9 242 67.8
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 7.0e-71 272.7 242 67.4
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 6.6e-69 266.2 355 48.2
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 2.8e-67 260.8 556 32.7
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 1.6e-62 245.0 456 33.3
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.4e-57 227.3 180 62.8
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.8e-51 207.6 220 60.0
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 6.2e-51 206.5 548 30.7
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 2.0e-49 201.4 132 75.0
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.9e-44 184.9 126 70.6
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 4.3e-44 183.7 113 77.9
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.4e-39 167.9 108 76.9
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.2e-38 165.6 185 58.4
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 4.5e-33 147.1 168 56.5
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 3.2e-31 141.0 103 71.8
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.6e-20 103.6 116 50.0
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.8e-19 101.3 68 72.1
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.2e-17 95.9 55 76.4
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.3e-16 92.4 133 51.9
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.8e-10 72.0 106 43.4
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 5.3e-10 70.5 86 46.5
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 5.3e-10 70.5 110 40.9
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 5.3e-10 70.5 110 40.9
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 1.5e-09 68.9 110 40.0
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.7e-08 65.5 84 47.6
PSO541G4576 Papaver somniferum HOM05D000002 ORTHO05D000001 8.5e-08 63.2 59 52.5
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.7e-06 58.2 65 50.8
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 3.6e-06 57.8 138 34.8
Phvul.006G191500 Phaseolus vulgaris HOM05D003219 ORTHO05D005190 4.6e-06 57.4 279 23.3
MSTRG.26730 Avicennia marina HOM05D003161 ORTHO05D005173 7.9e-06 56.6 216 27.3
VMungo0540G2265 Vigna mungo HOM05D003219 ORTHO05D005190 7.9e-06 56.6 279 23.3


User provided reference genes

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