Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 0.0e+00 1105.9 681 100.0
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.8e-298 1028.9 683 89.8
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.4e-295 1019.2 683 94.3
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 1.0e-293 1013.1 683 94.0
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.1e-293 1010.7 683 93.6
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 3.5e-286 988.0 684 86.8
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 1.7e-251 872.8 679 81.9
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 2.9e-248 862.1 677 81.8
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 6.6e-224 781.2 679 75.7
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 2.1e-222 776.2 681 76.5
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 8.9e-221 770.8 678 76.3
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 2.4e-218 762.7 686 72.4
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 5.4e-218 761.5 686 72.2
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.7e-216 756.5 686 73.3
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 1.7e-216 756.5 682 74.8
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.9e-215 753.1 678 74.2
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 4.3e-215 751.9 678 74.9
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 4.3e-215 751.9 676 74.4
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 2.8e-214 749.2 680 73.8
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 5.2e-213 745.0 680 74.4
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 2.0e-212 743.0 683 69.1
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 2.0e-212 743.0 676 69.8
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 9.9e-212 740.7 684 72.1
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 2.9e-211 739.2 631 77.5
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 1.4e-210 736.9 685 70.8
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 7.1e-210 734.6 678 69.6
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 1.2e-209 733.8 675 69.3
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.2e-209 733.8 686 69.5
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 2.7e-209 732.6 691 73.5
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 1.0e-208 730.7 704 71.7
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.1e-208 728.4 674 69.7
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 9.6e-207 724.2 660 74.2
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 9.6e-207 724.2 687 71.9
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 9.6e-207 724.2 684 72.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 2.1e-206 723.0 676 72.2
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 3.6e-206 722.2 672 70.1
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 1.1e-205 720.7 680 74.0
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.8e-205 719.9 662 72.7
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.5e-204 716.8 676 67.2
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 2.6e-204 716.1 676 69.1
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 5.8e-204 714.9 658 74.2
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 9.9e-204 714.1 684 71.8
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 1.3e-203 713.8 710 61.7
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 4.9e-203 711.8 693 67.0
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 9.3e-202 707.6 691 66.6
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 1.6e-201 706.8 661 72.3
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 2.1e-201 706.4 687 66.8
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 4.6e-201 705.3 659 66.9
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.0e-200 704.1 675 72.6
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 2.3e-200 703.0 675 72.3
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 3.9e-200 702.2 675 72.1
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 8.7e-200 701.0 673 72.4
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 8.7e-200 701.0 676 69.1
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 1.5e-199 700.3 661 70.3
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.3e-199 699.1 694 68.3
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 1.3e-198 697.2 672 67.1
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 2.1e-198 696.4 689 68.8
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 4.8e-198 695.3 670 67.0
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 1.4e-197 693.7 676 70.9
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 5.8e-196 688.3 683 70.1
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 1.3e-195 687.2 680 66.6
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 1.7e-195 686.8 674 69.4
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 8.4e-195 684.5 674 66.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 1.4e-194 683.7 676 69.5
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 2.4e-194 682.9 526 81.4
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 9.3e-194 681.0 696 64.1
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 4.6e-193 678.7 669 67.0
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 4.6e-193 678.7 659 67.2
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 6.0e-193 678.3 669 66.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 6.0e-193 678.3 669 66.8
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 1.3e-192 677.2 669 66.7
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 1.3e-192 677.2 669 66.7
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 1.7e-192 676.8 669 66.5
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 3.0e-192 676.0 659 66.3
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 1.1e-191 674.1 678 65.6
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 1.5e-191 673.7 680 66.3
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.3e-191 672.5 657 66.7
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 5.6e-191 671.8 609 76.0
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 1.3e-190 670.6 700 67.0
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.6e-190 670.2 679 68.6
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 4.8e-190 668.7 659 66.0
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 6.2e-190 668.3 675 65.0
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 6.2e-190 668.3 672 64.6
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.1e-189 667.5 657 66.4
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 3.1e-189 666.0 684 64.9
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 4.0e-189 665.6 676 64.6
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 5.3e-189 665.2 684 68.7
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 6.9e-189 664.8 679 68.3
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.5e-188 663.7 681 64.6
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 1.3e-187 660.6 678 65.6
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 2.2e-187 659.8 576 67.0
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 3.8e-187 659.1 556 75.0
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 4.9e-187 658.7 655 68.1
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 1.1e-186 657.5 559 73.5
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 1.1e-186 657.5 716 63.8
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 3.2e-186 656.0 652 63.7
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 7.1e-186 654.8 683 64.9
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 1.2e-185 654.1 677 68.2
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 2.1e-185 653.3 672 63.7
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 1.1e-183 647.5 668 63.9
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 9.6e-183 644.4 669 63.7
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 1.1e-181 641.0 624 67.5
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.2e-180 637.5 676 69.5
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 1.4e-178 630.6 683 66.8
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.0e-176 622.9 676 60.8
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 3.0e-176 622.9 648 64.7
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 1.2e-172 610.9 679 52.3
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 1.5e-172 610.5 586 70.6
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 4.5e-172 609.0 675 65.3
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 3.2e-170 602.8 533 79.0
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.8e-163 579.3 675 59.6
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 4.6e-161 572.4 618 63.3
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 6.9e-157 558.5 682 64.7
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 1.2e-153 547.7 700 55.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 4.5e-148 529.3 669 55.0
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.5e-146 523.5 735 59.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 2.4e-141 506.9 526 66.9
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 5.9e-140 502.3 524 66.2
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 3.8e-139 499.6 656 51.1
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 5.5e-138 495.7 513 70.0
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 4.4e-135 486.1 524 59.4
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.5e-132 476.5 630 53.5
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.2e-116 424.9 514 59.3
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 1.6e-113 414.5 454 51.5
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.8e-112 409.1 278 74.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 1.0e-107 395.2 476 65.5
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 3.6e-105 386.7 299 69.6
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 5.8e-103 379.4 477 61.4
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 1.2e-100 371.7 308 66.9
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.7e-100 370.5 318 61.3
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 2.7e-84 317.4 225 83.6
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 1.6e-76 291.6 311 53.7
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.1e-76 291.2 286 77.6
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 1.5e-71 275.0 215 78.1
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 3.4e-71 273.9 320 68.1
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 4.5e-71 273.5 286 56.6
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 2.2e-70 271.2 174 77.0
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 7.1e-69 266.2 267 52.8
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 4.6e-68 263.5 290 52.4
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 1.0e-54 219.2 138 78.3
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 2.9e-54 217.6 294 45.2
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 2.9e-54 217.6 306 45.4
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 9.3e-53 212.6 233 55.4
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.1e-48 197.2 289 67.1
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 6.5e-46 189.9 111 83.8
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 1.6e-44 185.3 111 82.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 9.7e-42 176.0 87 94.3
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 3.1e-40 171.0 167 56.9
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 2.8e-33 147.9 322 46.6
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.4e-32 145.6 188 51.6
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 2.1e-28 131.7 415 37.6
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 5.2e-27 127.1 123 49.6
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 1.5e-26 125.6 98 66.3
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.3e-26 124.4 95 66.3
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.2e-25 121.7 98 66.3
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.2e-25 121.7 107 60.7
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 2.1e-20 105.1 541 30.1
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 4.1e-16 90.9 69 62.3
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 5.4e-16 90.5 486 36.2
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.7e-14 85.5 68 58.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 2.5e-13 81.6 69 55.1
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 3.2e-13 81.3 201 27.9
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 4.2e-13 80.9 150 35.3
A05p35970 Brassica napus HOM05D003766 ORTHO05D004607 1.6e-12 79.0 63 58.7
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.1e-12 78.6 68 60.3
C09p31690 Brassica napus HOM05D021712 ORTHO05D021656 8.9e-11 73.2 58 56.9
CBR_g40333 Chara braunii HOM05D003766 ORTHO05D004607 1.2e-10 72.8 118 39.8
EL10Ac8g19330 Beta vulgaris HOM05D003766 ORTHO05D004607 3.7e-09 67.8 68 58.8
Oeu002213.1 Olea europaea HOM05D003766 ORTHO05D004607 3.7e-09 67.8 170 35.9
ECA238G4260 Erigeron canadensis HOM05D000871 ORTHO05D000770 1.4e-08 65.9 45 64.4
Hma1.2p1_0632F.1_g192420 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 9.2e-08 63.2 54 57.4
A02p21490 Brassica napus HOM05D021712 ORTHO05D021656 2.0e-07 62.0 54 53.7
Glyma.15G140700 Glycine max HOM05D003766 ORTHO05D004607 2.0e-07 62.0 73 46.6
BraA05t22403Z Brassica rapa HOM05D003766 ORTHO05D004607 2.9e-06 58.2 44 59.1


User provided reference genes

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