Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1619 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.6e-299 1031.9 521 100.0
FAN18G1922 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.3e-288 995.7 542 94.3
FvH4_5g34710 Fragaria vesca HOM05D004194 ORTHO05D005641 1.2e-286 989.2 528 95.6
FAN04G1572 Fragaria x ananassa HOM05D004194 ORTHO05D005641 3.0e-285 984.6 556 90.5
FAN08G1093 Fragaria x ananassa HOM05D004194 ORTHO05D005641 1.1e-282 976.1 558 89.8
RcHm_v2.0_Chr7g0216141 Rosa chinensis HOM05D004194 ORTHO05D005641 1.8e-274 948.7 525 92.6
MD12G1008900 Malus domestica HOM05D004194 ORTHO05D005641 5.0e-248 860.9 529 85.1
Prupe.1G532200 Prunus persica HOM05D004194 ORTHO05D005641 1.7e-243 845.9 530 82.6
Thecc.08G071000 Theobroma cacao HOM05D004194 ORTHO05D005641 4.0e-237 824.7 505 81.0
QL09p017817 Quercus lobata HOM05D004194 ORTHO05D005641 2.0e-236 822.4 518 81.1
Cfa013797 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.3e-235 819.7 525 80.6
CiPaw.07G165400 Carya illinoinensis HOM05D004194 ORTHO05D005641 4.1e-234 814.7 479 84.6
Lalb_Chr11g0064971 Lupinus albus HOM05D004194 ORTHO05D005641 4.1e-234 814.7 517 79.3
Haze_22460 Corylus avellana HOM05D004194 ORTHO05D005641 7.0e-234 813.9 525 80.2
TAR625G0434 Trochodendron aralioides HOM05D004194 ORTHO05D005641 7.0e-234 813.9 503 82.3
TAR381G0874 Trochodendron aralioides HOM05D004194 ORTHO05D005641 9.2e-234 813.5 528 79.4
vmacro17477 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 1.2e-233 813.1 479 84.6
Peaxi162Scf00454g00416 Petunia axillaris HOM05D004194 ORTHO05D005641 5.9e-233 810.8 525 77.1
PGSC0003DMG400009343 Solanum tuberosum HOM05D004194 ORTHO05D005641 5.9e-233 810.8 544 75.4
CANSAT21G1481 Cannabis sativa HOM05D004194 ORTHO05D005641 1.0e-232 810.1 526 77.8
Cpa.g.sc21.21 Carica papaya HOM05D004194 ORTHO05D005641 1.0e-232 810.1 487 82.8
CSS0028335 Camellia sinensis var. sinensis HOM05D004194 ORTHO05D005641 1.7e-232 809.3 529 79.2
Lj4A737T61 Lonicera japonica HOM05D004194 ORTHO05D005641 1.7e-232 809.3 503 80.7
Gorai.002G139300 Gossypium raimondii HOM05D004194 ORTHO05D005641 5.0e-232 807.7 505 79.2
Sopen04g030120 Solanum pennellii HOM05D004194 ORTHO05D005641 1.1e-231 806.6 529 76.9
Atru.chr13.1009 Acer truncatum HOM05D004194 ORTHO05D005641 1.5e-231 806.2 485 82.9
Duzib093G0846 Durio zibethinus HOM05D004194 ORTHO05D005641 1.5e-231 806.2 503 79.3
Gohir.A01G126900 Gossypium hirsutum HOM05D004194 ORTHO05D005641 1.5e-231 806.2 525 77.0
GSVIVG01009181001 Vitis vinifera HOM05D004194 ORTHO05D005641 1.5e-231 806.2 459 86.5
Gohir.D01G114300 Gossypium hirsutum HOM05D004194 ORTHO05D005641 2.5e-231 805.4 505 78.8
Lsat_1_v5_gn_6_104960 Lactuca sativa HOM05D004194 ORTHO05D005641 4.3e-231 804.7 514 79.0
Solyc04g076320.4 Solanum lycopersicum HOM05D004194 ORTHO05D005641 5.6e-231 804.3 529 76.9
ECA232G1743 Erigeron canadensis HOM05D004194 ORTHO05D005641 1.2e-230 803.1 487 81.1
Manes.18G058500 Manihot esculenta HOM05D004194 ORTHO05D005641 1.2e-230 803.1 461 85.5
Actinidia10274 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.1e-230 802.4 518 79.7
CANSAT21G2248 Cannabis sativa HOM05D004194 ORTHO05D005641 2.1e-230 802.4 516 78.7
CAN.G475.29 Capsicum annuum HOM05D004194 ORTHO05D005641 2.8e-230 802.0 458 83.6
Rhsim06G0071600 Rhododendron simsii HOM05D004194 ORTHO05D005641 4.7e-230 801.2 517 78.5
vmacro21340 Vaccinium macrocarpon HOM05D004194 ORTHO05D005641 4.7e-230 801.2 472 84.1
Nn5g29879 Nelumbo nucifera HOM05D004194 ORTHO05D005641 1.4e-229 799.7 514 78.4
TWI12G1457 Tripterygium wilfordii HOM05D004194 ORTHO05D005641 3.1e-229 798.5 460 85.7
Hma1.2p1_0010F.1_g006650 Hydrangea macrophylla HOM05D004194 ORTHO05D005641 4.0e-229 798.1 524 77.9
Glyma.04G094600 Glycine max HOM05D004194 ORTHO05D005641 5.2e-229 797.7 462 84.6
Medtr3g100220 Medicago truncatula HOM05D004194 ORTHO05D005641 8.9e-229 797.0 461 84.6
PGR042G2811 Punica granatum HOM05D004194 ORTHO05D005641 1.2e-228 796.6 480 82.1
Lsat_1_v5_gn_9_75040 Lactuca sativa HOM05D004194 ORTHO05D005641 2.0e-228 795.8 511 78.3
Glyma.06G096700 Glycine max HOM05D004194 ORTHO05D005641 2.6e-228 795.4 504 79.8
AUR62001023 Chenopodium quinoa HOM05D004194 ORTHO05D005641 4.4e-228 794.7 527 75.3
Phvul.002G296600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 5.8e-228 794.3 513 78.4
DCAR_012855 Daucus carota HOM05D004194 ORTHO05D005641 7.5e-228 793.9 490 81.2
AUR62004928 Chenopodium quinoa HOM05D004194 ORTHO05D005641 2.2e-227 792.3 463 83.8
Ca_23440_v3 Cicer arietinum L. HOM05D004194 ORTHO05D005641 2.2e-227 792.3 496 79.0
VMungo1309G1669 Vigna mungo HOM05D004194 ORTHO05D005641 4.9e-227 791.2 512 77.9
Ciclev10000871m.g Citrus clementina HOM05D004194 ORTHO05D005641 8.3e-227 790.4 491 80.0
Potri.002G106200 Populus trichocarpa HOM05D004194 ORTHO05D005641 3.2e-226 788.5 523 76.7
Eucgr.F02151 Eucalyptus grandis HOM05D004194 ORTHO05D005641 4.1e-226 788.1 534 75.8
TPR.G6303 Trifolium pratense HOM05D004194 ORTHO05D005641 2.7e-225 785.4 515 77.3
CsaV3_2G030250 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.3e-224 783.1 486 80.2
Hund21605 Selenicereus undatus HOM05D004194 ORTHO05D005641 1.7e-224 782.7 463 82.7
Sed0011017 Sechium edule HOM05D004194 ORTHO05D005641 3.9e-224 781.6 473 80.5
Sed0019515 Sechium edule HOM05D004194 ORTHO05D005641 3.9e-224 781.6 481 80.0
ClCG08G011660 Citrullus lanatus HOM05D004194 ORTHO05D005641 6.6e-224 780.8 491 79.4
Cc10_g15890 Coffea canephora HOM05D004194 ORTHO05D005641 6.6e-224 780.8 525 75.8
Lj1g0000709 Lotus japonicus HOM05D004194 ORTHO05D005641 2.5e-223 778.9 461 82.6
MELO3C003523.2 Cucumis melo HOM05D004194 ORTHO05D005641 4.3e-223 778.1 519 76.1
Hund09317 Selenicereus undatus HOM05D004194 ORTHO05D005641 4.3e-223 778.1 525 76.2
arahy.Tifrunner.gnm1.ann1.S0XZCZ Arachis hypogaea HOM05D004194 ORTHO05D005641 5.6e-223 777.7 462 82.5
PSO170G4697 Papaver somniferum HOM05D004194 ORTHO05D005641 5.6e-223 777.7 521 75.4
PSO210G0577 Papaver somniferum HOM05D004194 ORTHO05D005641 5.6e-223 777.7 516 76.4
SalBow6G2182 Salvia bowleyana HOM05D004194 ORTHO05D005641 7.3e-223 777.3 521 75.4
EL10Ac4g09117 Beta vulgaris HOM05D004194 ORTHO05D005641 1.2e-222 776.5 513 75.4
CsaV3_3G047990 Cucumis sativus L. HOM05D004194 ORTHO05D005641 1.1e-221 773.5 510 76.9
MSTRG.28070 Avicennia marina HOM05D004194 ORTHO05D005641 6.8e-221 770.8 459 82.6
SalBow8G0776 Salvia bowleyana HOM05D004194 ORTHO05D005641 8.9e-221 770.4 492 77.4
CDE02G0818 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 7.5e-220 767.3 470 80.0
CDE01G0047 Ceratophyllum demersum HOM05D004194 ORTHO05D005641 1.3e-219 766.5 470 79.8
THA.LOC104799791 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 8.3e-219 763.8 468 79.9
ATR0767G266 Amborella trichopoda HOM05D004194 ORTHO05D005641 1.1e-218 763.5 464 80.4
Psat5g048920 Pisum sativum HOM05D004194 ORTHO05D005641 2.4e-218 762.3 509 74.5
MBI16_g12466_MAGBIO Magnolia biondii HOM05D004194 ORTHO05D005641 5.4e-218 761.1 500 76.2
Sp6g32570 Schrenkiella parvula HOM05D004194 ORTHO05D005641 5.4e-218 761.1 467 78.8
Thhalv10013269m.g Eutrema salsugineum HOM05D004194 ORTHO05D005641 1.2e-217 760.0 505 74.5
Aqoxy6G00868 Aquilegia oxysepala HOM05D004194 ORTHO05D005641 1.6e-217 759.6 457 82.7
arahy.Tifrunner.gnm1.ann1.N12FQY Arachis hypogaea HOM05D004194 ORTHO05D005641 1.6e-217 759.6 495 76.8
BraA10t44732Z Brassica rapa HOM05D004194 ORTHO05D005641 4.6e-217 758.1 516 73.8
A10p26770 Brassica napus HOM05D004194 ORTHO05D005641 7.8e-217 757.3 516 73.8
CARHR202370 Cardamine hirsuta HOM05D004194 ORTHO05D005641 7.8e-217 757.3 460 79.3
BcaNung01903 Brassica carinata HOM05D004194 ORTHO05D005641 1.0e-216 756.9 460 79.1
BolC9t59414H Brassica oleracea HOM05D004194 ORTHO05D005641 2.3e-216 755.7 460 79.3
SGA_v2.0_scaffold5G02969 Striga asiatica HOM05D004194 ORTHO05D005641 2.3e-216 755.7 558 71.5
Sabra02G0083500 Salix brachista HOM05D004194 ORTHO05D005641 5.1e-216 754.6 578 68.7
THA.LOC104806871 Tarenaya hassleriana HOM05D004194 ORTHO05D005641 6.6e-216 754.2 463 79.5
C09p65910 Brassica napus HOM05D004194 ORTHO05D005641 1.5e-215 753.1 460 79.1
MELO3C011085.2 Cucumis melo HOM05D004194 ORTHO05D005641 2.8e-214 748.8 504 75.2
AT5G10920 Arabidopsis thaliana HOM05D004194 ORTHO05D005641 1.8e-213 746.1 508 73.2
Carub.0006s0941 Capsella rubella HOM05D004194 ORTHO05D005641 2.3e-213 745.7 460 78.5
AL6G21480 Arabidopsis lyrata HOM05D004194 ORTHO05D005641 6.8e-213 744.2 508 72.8
COL.COLO4_35249 Corchorus olitorius HOM05D004194 ORTHO05D005641 2.0e-212 742.7 526 72.8
ClCG11G014580 Citrullus lanatus HOM05D004194 ORTHO05D005641 3.7e-211 738.4 531 72.3
unitig_578.g16695 Utricularia gibba HOM05D004194 ORTHO05D005641 5.4e-210 734.6 499 74.5
Aa31LG3G16210 Aethionema arabicum HOM05D004194 ORTHO05D005641 2.1e-209 732.6 493 73.8
MD14G1006200 Malus domestica HOM05D004194 ORTHO05D005641 2.7e-209 732.3 528 75.4
Zm00001eb396370 Zea mays HOM05D004194 ORTHO05D005641 6.6e-208 727.6 496 74.2
Pp3c18_13220 Physcomitrium patens HOM05D004194 ORTHO05D005641 3.3e-207 725.3 461 75.1
SMO143G0205 Selaginella moellendorffii HOM05D004194 ORTHO05D005641 2.2e-203 712.6 470 73.4
Mapoly0005s0193 Marchantia polymorpha HOM05D004194 ORTHO05D005641 3.8e-203 711.8 478 72.0
Migut.N01596 Erythranthe guttata HOM05D004194 ORTHO05D005641 1.5e-199 699.9 459 76.0
CBR_g48741 Chara braunii HOM05D004194 ORTHO05D005641 3.3e-199 698.7 471 72.4
AagrBONN_evm.TU.Sc2ySwM_362.1891 Anthoceros agrestis HOM05D004194 ORTHO05D005641 3.6e-198 695.3 468 73.5
SGA_v2.0_scaffold24G10675 Striga asiatica HOM05D004194 ORTHO05D005641 6.9e-197 691.0 406 83.5
Ah.06g192260 Amaranthus hybridus HOM05D004194 ORTHO05D005641 9.0e-197 690.6 416 80.3
SHI09678 Sapria himalayana HOM05D004194 ORTHO05D005641 1.7e-195 686.4 461 74.0
HPP92_001058 Vanilla planifolia HOM05D004194 ORTHO05D005641 1.6e-193 679.9 464 73.5
Nitab4.5_0000131g0240 Nicotiana tabacum HOM05D004194 ORTHO05D005641 8.7e-192 674.1 443 78.1
Nitab4.5_0010888g0020 Nicotiana tabacum HOM05D004194 ORTHO05D005641 2.5e-191 672.5 444 77.7
Dinv42612 Davidia involucrata HOM05D004194 ORTHO05D005641 4.3e-191 671.8 425 80.9
Os03g0305500 Oryza sativa ssp. japonica HOM05D004194 ORTHO05D005641 9.6e-191 670.6 476 71.4
MD14G1006400 Malus domestica HOM05D004194 ORTHO05D005641 8.4e-187 657.5 393 85.5
Phvul.009G036600 Phaseolus vulgaris HOM05D004194 ORTHO05D005641 2.7e-185 652.5 371 85.4
Lalb_Chr08g0242531 Lupinus albus HOM05D004194 ORTHO05D005641 5.1e-184 648.3 371 84.9
BcaC01g05557 Brassica carinata HOM05D004194 ORTHO05D005641 4.3e-183 645.2 490 67.1
BcaC03g13340 Brassica carinata HOM05D004194 ORTHO05D005641 2.1e-182 642.9 514 67.3
HanXRQChr15g0484861 Helianthus annuus HOM05D004194 ORTHO05D005641 4.5e-180 635.2 785 49.3
PRCOL_00005568 Prasinoderma coloniale HOM05D004194 ORTHO05D005641 2.1e-177 626.3 453 66.2
BolC2t06434H Brassica oleracea HOM05D004194 ORTHO05D005641 2.9e-171 605.9 456 69.5
C03p24950 Brassica napus HOM05D004194 ORTHO05D005641 4.9e-171 605.1 490 63.9
BcaC04g19277 Brassica carinata HOM05D004194 ORTHO05D005641 2.1e-169 599.7 425 70.4
Sc11g0003910 Simmondsia chinensis HOM05D004194 ORTHO05D005641 4.2e-162 575.5 369 80.2
Actinidia33569 Actinidia chinensis HOM05D004194 ORTHO05D005641 1.2e-153 547.4 408 73.3
BcaNung01905 Brassica carinata HOM05D004194 ORTHO05D005641 1.1e-117 427.9 317 69.7
Lj4C718T1 Lonicera japonica HOM05D004194 ORTHO05D005641 3.2e-117 426.4 288 76.0
Oeu049772.1 Olea europaea HOM05D004194 ORTHO05D005641 1.9e-114 417.2 237 86.5
Sed0012940 Sechium edule HOM05D004194 ORTHO05D005641 1.5e-103 380.9 292 66.8
C02p04750 Brassica napus HOM05D004194 ORTHO05D005641 5.8e-95 352.4 250 73.2
MCO11G430 Micromonas commoda HOM05D004194 ORTHO05D005641 4.6e-92 342.8 458 40.8
Cfa022469 Carpinus fangiana HOM05D004194 ORTHO05D005641 1.5e-87 327.8 460 39.3
Cre01.g021251 Chlamydomonas reinhardtii HOM05D004194 ORTHO05D005641 2.0e-87 327.4 473 38.7
HPP92_001149 Vanilla planifolia HOM05D004194 ORTHO05D005641 5.8e-87 325.9 200 79.5
Oeu049771.1 Olea europaea HOM05D004194 ORTHO05D005641 5.8e-79 299.3 230 65.7
Ah.06g192250 Amaranthus hybridus HOM05D004194 ORTHO05D005641 9.0e-64 248.8 397 41.1
arahy.Tifrunner.gnm1.ann1.1M3GV3 Arachis hypogaea HOM05D004194 ORTHO05D005641 2.5e-61 240.7 138 84.1
Oeu035352.1 Olea europaea HOM05D004194 ORTHO05D005641 4.3e-58 229.9 204 61.3
A02p00760 Brassica napus HOM05D004194 ORTHO05D005641 1.7e-54 218.0 166 68.7
PSO478G2000 Papaver somniferum HOM05D004194 ORTHO05D005641 2.9e-54 217.2 193 60.6
Psat6g188680 Pisum sativum HOM05D004194 ORTHO05D005641 1.1e-53 215.3 167 65.9
BcaB01g03715 Brassica carinata HOM05D004194 ORTHO05D005641 5.0e-46 189.9 246 45.5
SEGI_11237 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 4.6e-44 183.3 98 88.8
SEGI_18549 Sequoiadendron giganteum HOM05D004194 ORTHO05D005641 6.7e-43 179.5 123 67.5
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 2.5e-42 177.6 378 30.4
C02p04760 Brassica napus HOM05D004194 ORTHO05D005641 3.3e-42 177.2 132 63.6
Oeu028023.1 Olea europaea HOM05D004194 ORTHO05D033851 8.2e-41 172.6 91 91.2
Psat6g188720 Pisum sativum HOM05D001289 ORTHO05D005641 3.6e-36 157.1 119 67.2
Actinidia19243 Actinidia chinensis HOM05D004194 ORTHO05D005641 2.2e-33 147.9 124 57.3
PSO349G0016 Papaver somniferum HOM05D004194 ORTHO05D005641 3.1e-32 144.1 77 88.3
A02p00750 Brassica napus HOM05D004194 ORTHO05D005641 2.6e-31 141.0 93 77.4
BraA02t05060Z Brassica rapa HOM05D004194 ORTHO05D033851 4.2e-29 133.7 74 87.8
Aqoxy84s004 Aquilegia oxysepala HOM05D004194 ORTHO05D077318 2.6e-26 124.4 290 29.7
VMungo0331G0568 Vigna mungo HOM05D004194 ORTHO05D007986 2.6e-26 124.4 100 64.0
VMungo1127G2164 Vigna mungo HOM05D004194 ORTHO05D007986 1.7e-25 121.7 121 57.0
RcHm_v2.0_Chr6g0244231 Rosa chinensis HOM05D004194 ORTHO05D341107 1.1e-21 109.0 110 58.2
BcaNung01906 Brassica carinata HOM05D004194 ORTHO05D005641 3.2e-13 80.9 57 59.6
Sed0027437 Sechium edule HOM05D004194 ORTHO05D033851 6.8e-11 73.2 41 78.0
Psat2g086120 Pisum sativum HOM05D004194 ORTHO05D037373 1.2e-10 72.4 47 70.2
Psat6g163800 Pisum sativum HOM05D004194 ORTHO05D037373 1.5e-10 72.0 43 74.4
Psat3g096720 Pisum sativum HOM05D004194 ORTHO05D324018 1.7e-06 58.5 35 74.3
Psat5g254960 Pisum sativum HOM05D015311 ORTHO05D321322 6.6e-06 56.6 35 77.1


User provided reference genes

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