Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 4.2e-93 344.7 182 100.0
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 7.5e-42 174.5 185 64.3
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 8.9e-35 151.0 78 98.7
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 6.4e-33 144.8 78 96.2
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 6.4e-33 144.8 78 96.2
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 6.4e-33 144.8 76 96.1
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 6.4e-25 118.2 78 76.9
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 3.2e-24 115.9 75 77.3
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 4.2e-24 115.5 78 75.6
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 5.4e-24 115.2 78 75.6
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 7.1e-24 114.8 78 75.6
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 9.3e-24 114.4 78 74.4
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 2.7e-23 112.8 75 76.0
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 6.0e-23 111.7 75 76.0
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 1.0e-22 110.9 75 74.7
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 1.0e-22 110.9 78 74.4
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 6.6e-22 108.2 77 70.1
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 8.7e-22 107.8 76 69.7
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 1.1e-21 107.5 75 73.3
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 1.9e-21 106.7 72 75.0
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 1.9e-21 106.7 78 69.2
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 3.3e-21 105.9 75 70.7
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 4.3e-21 105.5 76 71.1
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 5.6e-21 105.1 73 71.2
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 5.6e-21 105.1 73 71.2
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 7.3e-21 104.8 74 71.6
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 1.3e-20 104.0 76 68.4
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 1.3e-20 104.0 75 70.7
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 1.6e-20 103.6 78 65.4
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 2.1e-20 103.2 74 70.3
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 2.1e-20 103.2 74 70.3
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 3.6e-20 102.4 76 71.1
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 4.8e-20 102.1 77 67.5
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 4.8e-20 102.1 78 64.1
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 4.8e-20 102.1 77 67.5
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 4.8e-20 102.1 69 76.8
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 6.2e-20 101.7 75 68.0
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 8.1e-20 101.3 76 68.4
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 1.8e-19 100.1 76 68.4
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 2.4e-19 99.8 78 71.8
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 2.4e-19 99.8 78 71.8
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 3.1e-19 99.4 74 68.9
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 3.1e-19 99.4 75 69.3
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 4.0e-19 99.0 76 72.4
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 4.0e-19 99.0 76 72.4
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 5.3e-19 98.6 80 65.0
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 6.9e-19 98.2 72 70.8
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 9.0e-19 97.8 80 65.0
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 1.2e-18 97.4 75 72.0
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 1.5e-18 97.1 74 67.6
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.5e-18 97.1 74 64.9
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 1.5e-18 97.1 76 68.4
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 2.6e-18 96.3 77 64.9
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 3.4e-18 95.9 80 61.2
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 3.4e-18 95.9 74 64.9
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 4.5e-18 95.5 73 64.4
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 5.8e-18 95.1 66 69.7
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 7.6e-18 94.7 75 65.3
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 7.6e-18 94.7 79 59.5
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 9.9e-18 94.4 77 62.3
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 2.2e-17 93.2 76 63.2
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 2.2e-17 93.2 77 63.6
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.9e-17 92.8 75 64.0
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 3.8e-17 92.4 87 62.1
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 4.9e-17 92.0 66 71.2
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 4.9e-17 92.0 66 71.2
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 4.9e-17 92.0 77 62.3
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 8.4e-17 91.3 66 66.7
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 1.1e-16 90.9 66 71.2
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 1.4e-16 90.5 73 63.0
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 1.9e-16 90.1 77 61.0
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 1.9e-16 90.1 73 63.0
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 2.4e-16 89.7 68 69.1
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 2.4e-16 89.7 73 60.3
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 4.2e-16 89.0 66 68.2
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 5.4e-16 88.6 67 64.2
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 7.1e-16 88.2 80 57.5
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 9.3e-16 87.8 67 70.1
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 9.3e-16 87.8 67 70.1
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 9.3e-16 87.8 67 70.1
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 9.3e-16 87.8 67 70.1
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 9.3e-16 87.8 67 70.1
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 9.3e-16 87.8 67 70.1
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 1.6e-15 87.0 67 62.7
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 1.6e-15 87.0 103 47.6
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 2.7e-15 86.3 67 68.7
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 2.7e-15 86.3 67 68.7
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 4.6e-15 85.5 67 68.7
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 4.6e-15 85.5 62 67.7
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 1.8e-14 83.6 77 59.7
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 5.1e-14 82.0 67 65.7
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 8.7e-14 81.3 76 56.6
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 1.1e-13 80.9 64 65.6
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 1.1e-13 80.9 76 56.6
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 1.9e-13 80.1 73 56.2
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 4.3e-13 79.0 76 55.3
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 5.6e-13 78.6 98 49.0
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 9.6e-13 77.8 68 58.8
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 1.3e-12 77.4 69 63.8
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 2.1e-12 76.6 68 57.4
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 8.1e-12 74.7 63 61.9
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 1.3e-09 67.4 77 49.4
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 8.4e-09 64.7 72 51.4
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 1.4e-08 63.9 64 53.1
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 4.6e-07 58.9 33 84.8
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 4.6e-07 58.9 33 84.8


User provided reference genes

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