Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.8e-245 852.0 414 100.0
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.5e-239 832.4 414 98.1
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.4e-239 831.2 414 98.1
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.4e-237 825.9 413 96.6
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 3.2e-237 824.7 414 96.6
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 5.4e-237 823.9 413 96.6
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 2.6e-223 778.5 414 91.1
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 1.9e-189 666.0 416 78.1
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 3.5e-188 661.8 416 78.4
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 1.6e-185 652.9 416 76.2
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 9.4e-165 583.9 415 68.0
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 4.7e-164 581.6 426 68.3
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 1.8e-163 579.7 418 67.0
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 1.5e-162 576.6 421 68.4
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 4.4e-162 575.1 422 67.3
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 3.7e-161 572.0 423 65.7
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 4.8e-161 571.6 413 68.0
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 6.3e-161 571.2 415 66.5
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.1e-160 570.5 415 66.5
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 1.1e-160 570.5 425 66.6
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 1.4e-160 570.1 420 65.7
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 1.8e-160 569.7 423 67.1
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 2.4e-160 569.3 424 64.6
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 1.6e-159 566.6 419 65.6
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 2.0e-159 566.2 416 68.0
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 7.7e-159 564.3 418 64.6
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.3e-158 563.5 423 66.9
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 2.9e-158 562.4 419 64.4
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 6.5e-158 561.2 419 64.7
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 8.5e-158 560.8 420 64.5
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.5e-157 560.1 420 64.0
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.5e-157 560.1 420 64.0
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 1.5e-157 560.1 417 63.5
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 7.2e-157 557.8 421 65.1
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 2.7e-156 555.8 419 63.5
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.7e-156 555.8 413 65.1
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 8.0e-156 554.3 424 64.9
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 1.0e-155 553.9 413 64.6
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 1.0e-155 553.9 413 63.4
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.8e-155 553.1 413 65.1
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 1.5e-154 550.1 427 63.2
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 4.4e-154 548.5 418 62.9
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 5.7e-154 548.1 416 65.1
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.7e-153 546.6 422 65.2
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 1.1e-152 543.9 422 64.0
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 1.4e-152 543.5 449 61.2
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.4e-152 542.7 423 63.1
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 5.3e-152 541.6 411 62.8
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 9.1e-152 540.8 421 62.7
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.6e-151 540.0 417 63.5
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 2.0e-151 539.7 423 61.5
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 7.7e-151 537.7 415 64.1
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 1.7e-150 536.6 416 63.5
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 2.2e-150 536.2 403 65.3
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 7.2e-149 531.2 412 64.1
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 3.6e-148 528.9 394 65.7
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 8.0e-148 527.7 519 53.4
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.4e-147 526.9 419 63.5
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 1.8e-147 526.6 418 61.7
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 3.0e-147 525.8 395 63.8
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.2e-146 523.9 419 62.8
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 1.5e-146 523.5 418 60.8
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 2.2e-145 519.6 412 63.1
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 6.3e-145 518.1 494 53.6
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 4.1e-144 515.4 428 61.4
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 5.4e-144 515.0 421 60.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 9.1e-144 514.2 415 61.9
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 2.7e-143 512.7 416 61.1
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 7.7e-143 511.1 398 62.6
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.7e-142 510.0 388 64.7
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 5.0e-142 508.4 416 60.3
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 1.5e-141 506.9 426 61.0
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.5e-141 505.0 416 60.8
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.1e-140 503.1 416 60.1
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 2.7e-140 502.7 522 51.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.4e-139 500.4 413 59.1
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 5.2e-139 498.4 418 56.5
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 5.2e-139 498.4 419 56.8
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.2e-138 497.3 410 58.8
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.0e-138 496.5 410 57.3
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 4.9e-137 491.9 425 55.5
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-136 490.7 412 58.0
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.1e-136 490.7 412 58.0
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 4.1e-136 488.8 423 57.0
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 1.9e-133 479.9 461 52.9
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 5.6e-133 478.4 403 61.3
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 4.7e-132 475.3 413 56.4
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 4.7e-132 475.3 412 58.5
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 6.8e-131 471.5 387 60.2
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 8.9e-131 471.1 452 51.5
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 1.2e-130 470.7 411 54.7
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 1.5e-130 470.3 461 53.6
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.9e-129 466.1 413 55.9
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 2.0e-127 459.9 415 55.9
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 3.5e-127 459.1 406 56.4
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 3.5e-127 459.1 408 54.4
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 8.6e-126 454.5 422 53.8
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 8.0e-124 448.0 364 61.3
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 2.3e-123 446.4 414 54.3
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 5.2e-123 445.3 409 54.3
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 5.2e-123 445.3 463 50.1
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 2.6e-122 443.0 411 53.3
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 1.2e-119 434.1 457 49.2
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 1.2e-119 434.1 413 53.0
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 8.6e-118 427.9 413 51.8
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 5.6e-117 425.2 413 51.1
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 5.6e-117 425.2 413 51.1
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 7.3e-117 424.9 412 52.7
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.6e-114 416.4 341 60.7
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.6e-114 416.4 341 60.7
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 3.1e-107 392.9 440 47.0
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 4.9e-105 385.6 435 45.7
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 1.2e-103 380.9 414 46.1
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 6.2e-100 368.6 417 46.3
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 7.6e-98 361.7 421 47.5
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 1.8e-91 340.5 267 63.3
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 3.1e-91 339.7 277 60.6
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 3.2e-88 329.7 417 46.0
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.8e-86 323.9 170 82.9
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 3.0e-86 323.2 334 50.0
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.1e-76 290.4 141 87.9
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 2.4e-75 287.0 422 38.4
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.8e-74 282.3 156 78.8
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.3e-69 266.5 144 81.9
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 1.0e-65 255.0 539 32.1
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 1.8e-54 217.6 121 75.2
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 1.7e-49 201.1 91 92.3
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 5.0e-41 172.9 192 47.9
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 9.1e-35 152.1 131 57.3
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 1.7e-28 131.3 83 71.1
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.4e-27 126.3 73 82.2
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 5.4e-27 126.3 73 82.2
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 3.5e-26 123.6 66 81.8
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 3.6e-23 113.6 57 86.0
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 1.8e-19 101.3 68 73.5
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 5.4e-19 99.8 93 48.4
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 2.5e-16 90.9 173 34.7
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 8.9e-14 82.4 72 59.7
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 2.2e-12 77.8 61 65.6
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 5.4e-11 73.2 72 52.8


User provided reference genes

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