Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 0.0e+00 1161.7 559 100.0
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.3e-305 1052.4 573 90.8
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.9e-304 1046.6 573 90.2
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.5e-303 1045.4 573 90.4
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.8e-303 1043.5 573 90.2
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.1e-296 1022.7 579 87.6
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 6.9e-280 966.8 579 82.4
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 5.9e-279 963.8 579 81.9
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.7e-270 935.6 574 78.9
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 3.8e-270 934.5 571 78.8
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 3.8e-270 934.5 573 78.9
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 5.0e-270 934.1 572 79.2
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.5e-269 932.6 563 80.3
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 1.9e-269 932.2 571 78.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 3.6e-268 927.9 549 80.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.3e-267 925.2 555 79.6
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 3.0e-267 924.9 573 78.0
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 6.7e-267 923.7 574 78.6
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.3e-266 921.4 573 77.7
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 7.5e-266 920.2 574 77.7
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 9.7e-266 919.8 573 78.2
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.8e-265 918.3 575 77.6
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 3.7e-265 917.9 554 80.3
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 3.7e-265 917.9 569 78.4
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 1.8e-264 915.6 574 77.7
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 2.4e-264 915.2 555 78.7
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 3.1e-264 914.8 554 79.6
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 1.2e-263 912.9 554 79.8
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-263 912.9 573 77.5
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.2e-263 912.9 554 79.8
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-263 911.8 573 77.3
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 2.7e-263 911.8 575 77.2
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 3.5e-263 911.4 574 77.4
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 4.5e-263 911.0 573 77.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-262 909.8 573 77.3
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-262 909.8 573 77.3
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.3e-262 909.4 555 78.6
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.3e-262 909.4 563 78.9
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.7e-262 909.1 573 77.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.2e-262 908.7 555 78.2
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 2.9e-262 908.3 574 77.2
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 2.9e-262 908.3 552 79.3
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 3.8e-262 907.9 577 76.9
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.5e-262 907.1 574 77.0
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-261 906.4 573 77.1
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.5e-261 906.0 575 76.5
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.5e-261 905.2 572 76.9
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 3.2e-261 904.8 554 79.2
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 3.2e-261 904.8 554 78.9
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 3.2e-261 904.8 554 79.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 3.2e-261 904.8 573 76.6
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 3.2e-261 904.8 554 78.9
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 4.2e-261 904.4 605 74.9
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 7.2e-261 903.7 555 78.0
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 2.1e-260 902.1 554 78.9
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 3.6e-260 901.4 559 77.6
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.8e-259 899.0 555 77.8
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.8e-259 899.0 573 75.6
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 2.3e-259 898.7 557 77.9
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 3.0e-259 898.3 555 77.1
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 4.0e-259 897.9 559 77.8
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 1.5e-258 896.0 554 78.2
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.6e-258 895.2 581 75.4
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 2.6e-258 895.2 555 76.9
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 7.5e-258 893.6 597 73.9
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 1.7e-257 892.5 555 77.1
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.2e-257 892.1 557 77.2
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.2e-257 892.1 555 77.1
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 7.0e-256 887.1 555 76.8
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 7.7e-255 883.6 575 75.7
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 7.7e-255 883.6 575 75.7
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 1.1e-253 879.8 562 76.5
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.1e-252 875.5 557 76.3
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.7e-252 874.4 573 74.9
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.0e-251 873.2 555 75.1
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.4e-251 872.8 555 75.0
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 4.0e-251 871.3 555 75.5
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 2.6e-250 868.6 550 75.5
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.7e-250 867.5 555 75.5
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 5.7e-250 867.5 555 74.4
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 4.9e-249 864.4 550 76.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 9.2e-248 860.1 562 74.7
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 4.5e-247 857.8 554 75.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.8e-246 854.7 556 74.1
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 8.6e-246 853.6 555 73.3
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 2.5e-245 852.0 548 75.2
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 7.3e-245 850.5 571 72.5
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.2e-244 849.7 572 71.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 8.0e-244 847.0 561 73.6
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.4e-243 846.3 562 72.4
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 5.2e-243 844.3 534 77.7
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.3e-241 839.7 562 72.2
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.3e-241 839.7 553 74.9
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 4.1e-240 834.7 560 74.1
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 4.6e-239 831.2 575 72.7
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 2.5e-237 825.5 557 72.2
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.1e-232 810.1 554 72.4
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 5.6e-229 797.7 550 68.7
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.3e-227 792.3 554 69.5
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 8.9e-227 790.4 580 67.4
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.5e-226 789.6 574 69.2
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.3e-222 775.8 545 69.4
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.0e-222 775.4 545 69.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 5.1e-222 774.6 557 70.4
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 1.5e-221 773.1 559 68.0
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 6.2e-220 767.7 441 83.7
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 8.1e-220 767.3 499 73.9
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 7.6e-218 760.8 563 68.7
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.4e-216 756.5 553 67.3
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 1.2e-215 753.4 423 84.9
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 2.1e-215 752.7 556 67.1
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 6.0e-215 751.1 424 84.4
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 6.4e-209 731.1 560 67.3
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.5e-205 719.9 511 69.5
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.3e-205 718.4 554 64.6
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 1.1e-200 703.7 559 62.3
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 5.6e-197 691.4 548 62.4
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 8.4e-193 677.6 537 62.6
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 6.2e-188 661.4 547 59.4
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.5e-183 645.6 540 59.4
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.0e-177 627.5 611 56.8
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-177 626.3 543 59.7
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-177 626.3 543 59.7
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.9e-168 596.7 330 86.4
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.5e-165 587.0 334 82.6
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 7.5e-149 531.6 292 85.6
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 6.1e-143 511.9 561 53.7
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 5.2e-134 482.3 309 75.7
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 6.8e-126 455.3 555 45.9
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.2e-103 381.3 344 59.3
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.1e-103 378.6 308 61.7
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.1e-99 368.2 198 87.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.3e-71 275.0 495 39.2
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.6e-63 248.1 331 41.4
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 4.5e-61 240.0 139 81.3
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.7e-60 238.0 133 85.7
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 3.8e-60 236.9 191 59.7
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 1.4e-54 218.4 129 80.6
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 6.9e-54 216.1 137 75.9
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.5e-51 207.6 127 78.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.5e-51 207.6 127 78.0
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 2.0e-48 198.0 120 77.5
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 2.0e-48 198.0 120 77.5
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.4e-46 191.8 119 76.5
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.4e-46 191.8 119 76.5
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.2e-43 180.3 119 72.3
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.4e-41 175.3 109 72.5
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.4e-35 152.5 76 89.5
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-34 151.4 106 67.9
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 1.2e-32 145.6 95 70.5
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.4e-32 144.1 87 70.1
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.7e-31 141.7 79 84.8
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.8e-22 111.7 60 83.3
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 7.0e-22 109.8 189 39.7
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 3.6e-18 97.4 63 74.6
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-10 72.4 47 66.0
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 4.0e-09 67.4 123 33.3
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.0e-08 65.1 43 60.5


User provided reference genes

Program Settings