Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4324 Fragaria x ananassa HOM05D006427 ORTHO05D008147 3.1e-75 285.0 143 100.0
FAN07G1740 Fragaria x ananassa HOM05D006427 ORTHO05D008147 1.1e-72 276.6 143 97.2
FAN17G2476 Fragaria x ananassa HOM05D006427 ORTHO05D006987 2.5e-72 275.4 143 96.5
FvH4_4g22790 Fragaria vesca HOM05D006427 ORTHO05D008147 1.6e-58 229.6 118 100.0
RcHm_v2.0_Chr4g0429011 Rosa chinensis HOM05D006427 ORTHO05D008147 6.5e-49 197.6 118 86.4
Prupe.1G216700 Prunus persica HOM05D006427 ORTHO05D008147 2.8e-44 182.2 146 69.9
MD16G1129900 Malus domestica HOM05D006427 ORTHO05D008147 1.0e-41 173.7 142 68.3
TAR371G1278 Trochodendron aralioides HOM05D006427 ORTHO05D006987 1.8e-38 162.9 146 63.0
ClCG06G001750 Citrullus lanatus HOM05D006427 ORTHO05D006987 1.2e-37 160.2 146 61.6
QL03p049638 Quercus lobata HOM05D006427 ORTHO05D008147 3.4e-37 158.7 142 61.3
GSVIVG01004944001 Vitis vinifera HOM05D006427 ORTHO05D008147 4.4e-37 158.3 142 61.3
Sed0027051 Sechium edule HOM05D006427 ORTHO05D008147 5.7e-37 157.9 144 59.0
COL.COLO4_21789 Corchorus olitorius HOM05D006427 ORTHO05D008147 1.3e-36 156.8 144 61.8
Thecc.02G193800 Theobroma cacao HOM05D006427 ORTHO05D008147 3.7e-36 155.2 142 64.1
Duzib052G1158 Durio zibethinus HOM05D006427 ORTHO05D008147 6.3e-36 154.5 129 66.7
CSS0005682 Camellia sinensis var. sinensis HOM05D006427 ORTHO05D008147 3.1e-35 152.1 143 58.0
Dinv19142 Davidia involucrata HOM05D006427 ORTHO05D008147 5.4e-35 151.4 143 60.1
MELO3C022354.2 Cucumis melo HOM05D006427 ORTHO05D008147 9.2e-35 150.6 144 59.0
Manes.09G187300 Manihot esculenta HOM05D006427 ORTHO05D008147 1.2e-34 150.2 139 64.0
CsaV3_6G007780 Cucumis sativus L. HOM05D006427 ORTHO05D008147 1.6e-34 149.8 143 59.4
vmacro10314 Vaccinium macrocarpon HOM05D000095 ORTHO05D008147 3.5e-34 148.7 126 65.1
TWI36G1420 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 5.0e-33 144.8 139 57.6
Gohir.A04G100800 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.1e-32 143.7 142 61.3
Atru.chr2.853 Acer truncatum HOM05D006427 ORTHO05D008147 1.5e-32 143.3 145 58.6
Potri.001G066400 Populus trichocarpa HOM05D006427 ORTHO05D008147 1.9e-32 142.9 138 60.9
Sabra01G0046200 Salix brachista HOM05D006427 ORTHO05D008147 3.3e-32 142.1 138 60.1
Rhsim08G0039400 Rhododendron simsii HOM05D006427 ORTHO05D008147 4.3e-32 141.7 146 58.2
Ciclev10006190m.g Citrus clementina HOM05D006427 ORTHO05D008147 5.6e-32 141.4 143 60.8
Nn4g22155 Nelumbo nucifera HOM05D006427 ORTHO05D008147 9.5e-32 140.6 144 59.7
Gohir.D04G140100 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.2e-31 140.2 142 59.2
Gorai.012G125000 Gossypium raimondii HOM05D006427 ORTHO05D008147 1.2e-31 140.2 142 59.9
vmacro18378 Vaccinium macrocarpon HOM05D006427 ORTHO05D008147 1.2e-31 140.2 146 55.5
Duzib132G1024 Durio zibethinus HOM05D006427 ORTHO05D008147 1.6e-31 139.8 144 59.0
Eucgr.G01965 Eucalyptus grandis HOM05D006427 ORTHO05D008147 2.1e-31 139.4 119 61.3
Psat3g093640 Pisum sativum HOM05D006427 ORTHO05D008147 3.6e-31 138.7 134 54.5
CANSAT01G2059 Cannabis sativa HOM05D006427 ORTHO05D008147 8.0e-31 137.5 148 57.4
PSO017G1866 Papaver somniferum HOM05D006427 ORTHO05D008147 3.0e-30 135.6 144 56.9
MBI07_g07335_MAGBIO Magnolia biondii HOM05D006427 ORTHO05D008147 4.0e-30 135.2 127 56.7
Nn3g16291 Nelumbo nucifera HOM05D006427 ORTHO05D008147 6.8e-30 134.4 149 57.7
PSO478G1388 Papaver somniferum HOM05D006427 ORTHO05D008147 6.8e-30 134.4 143 53.8
CDE02G3326 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.2e-29 133.7 144 56.2
CDE06G0025 Ceratophyllum demersum HOM05D006427 ORTHO05D008147 1.2e-29 133.7 144 55.6
Haze_14945 Corylus avellana HOM05D006427 ORTHO05D008147 1.2e-29 133.7 149 52.3
Glyma.16G049000 Glycine max HOM05D006427 ORTHO05D008147 1.5e-29 133.3 147 53.7
VMungo1383G1825 Vigna mungo HOM05D006427 ORTHO05D008147 2.0e-29 132.9 143 52.4
Hma1.2p1_1436F.1_g283150 Hydrangea macrophylla HOM05D006427 ORTHO05D008147 3.4e-29 132.1 165 49.1
Cc11_g15110 Coffea canephora HOM05D006427 ORTHO05D008147 4.4e-29 131.7 140 53.6
PGR119G1648 Punica granatum HOM05D006427 ORTHO05D008147 5.8e-29 131.3 148 51.4
TWI18G0640 Tripterygium wilfordii HOM05D006427 ORTHO05D008147 7.5e-29 131.0 137 55.5
Atru.chr10.1283 Acer truncatum HOM05D006427 ORTHO05D008147 2.2e-28 129.4 142 55.6
Eucgr.G01934 Eucalyptus grandis HOM05D006427 ORTHO05D008147 2.2e-28 129.4 145 53.8
QL02p069636 Quercus lobata HOM05D006427 ORTHO05D008147 2.2e-28 129.4 145 51.7
Ciclev10017113m.g Citrus clementina HOM05D006427 ORTHO05D008147 2.9e-28 129.0 143 49.7
Glyma.19G102400 Glycine max HOM05D006427 ORTHO05D008147 2.9e-28 129.0 143 51.7
CiPaw.03G002500 Carya illinoinensis HOM05D006427 ORTHO05D008147 4.9e-28 128.3 147 55.1
Thecc.04G047300 Theobroma cacao HOM05D006427 ORTHO05D008147 4.9e-28 128.3 146 54.1
Medtr7g084000 Medicago truncatula HOM05D006427 ORTHO05D008147 6.4e-28 127.9 147 49.0
Lj1g0026899 Lotus japonicus HOM05D006427 ORTHO05D008147 8.3e-28 127.5 131 55.7
THA.LOC104805303 Tarenaya hassleriana HOM05D006427 ORTHO05D008147 8.3e-28 127.5 145 53.1
Ca_08136_v3 Cicer arietinum L. HOM05D006427 ORTHO05D008147 1.1e-27 127.1 145 53.8
GSVIVG01032993001 Vitis vinifera HOM05D006427 ORTHO05D008147 1.1e-27 127.1 146 51.4
Gohir.A11G063600 Gossypium hirsutum HOM05D006427 ORTHO05D008147 1.4e-27 126.7 136 55.1
RhsimUnG0101500 Rhododendron simsii HOM05D006427 ORTHO05D008147 1.4e-27 126.7 79 72.2
Aqoxy5G03163 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 3.2e-27 125.6 137 54.0
BcaC04g23927 Brassica carinata HOM05D006427 ORTHO05D008147 3.2e-27 125.6 146 50.7
C09p03290 Brassica napus HOM05D006427 ORTHO05D008147 3.2e-27 125.6 146 50.7
A09p03110 Brassica napus HOM05D001087 ORTHO05D001846 4.1e-27 125.2 139 53.2
BraA09t35950Z Brassica rapa HOM05D006427 ORTHO05D003553 4.1e-27 125.2 139 53.2
Phvul.001G085200 Phaseolus vulgaris HOM05D006427 ORTHO05D008147 5.4e-27 124.8 143 49.7
Lj3g0013404 Lotus japonicus HOM05D006427 ORTHO05D008147 9.2e-27 124.0 147 49.7
AT3G26740 Arabidopsis thaliana HOM05D006427 ORTHO05D008147 1.2e-26 123.6 140 48.6
Thhalv10005093m.g Eutrema salsugineum HOM05D006427 ORTHO05D008147 1.6e-26 123.2 149 51.7
ATR0582G340 Amborella trichopoda HOM05D006427 ORTHO05D008147 2.0e-26 122.9 142 50.0
Gohir.D11G067900 Gossypium hirsutum HOM05D006427 ORTHO05D008147 2.0e-26 122.9 146 52.1
Gorai.007G072700 Gossypium raimondii HOM05D006427 ORTHO05D008147 2.0e-26 122.9 146 52.1
arahy.Tifrunner.gnm1.ann1.BNAN8S Arachis hypogaea HOM05D006427 ORTHO05D008147 2.7e-26 122.5 145 49.7
arahy.Tifrunner.gnm1.ann1.YL5YHR Arachis hypogaea HOM05D006427 ORTHO05D008147 2.7e-26 122.5 145 49.7
HPP92_021622 Vanilla planifolia HOM05D006427 ORTHO05D008147 3.5e-26 122.1 122 54.1
Potri.003G163402 Populus trichocarpa HOM05D006427 ORTHO05D008147 4.6e-26 121.7 97 62.9
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 6.0e-26 121.3 139 50.4
CsaV3_3G027740 Cucumis sativus L. HOM05D006427 ORTHO05D008147 6.0e-26 121.3 146 52.7
Duzib264G1258 Durio zibethinus HOM05D006427 ORTHO05D008147 6.0e-26 121.3 145 52.4
BcaB07g30216 Brassica carinata HOM05D006427 ORTHO05D008147 7.8e-26 120.9 144 50.7
A02p34710 Brassica napus HOM05D006427 ORTHO05D008147 7.8e-26 120.9 144 50.7
CARHR147760 Cardamine hirsuta HOM05D006427 ORTHO05D008147 7.8e-26 120.9 140 50.0
Cpa.g.sc70.74 Carica papaya HOM05D006427 ORTHO05D008147 7.8e-26 120.9 141 52.5
Carub.0005s0476 Capsella rubella HOM05D006427 ORTHO05D008147 1.0e-25 120.6 142 49.3
C02p53270 Brassica napus HOM05D006427 ORTHO05D008147 1.3e-25 120.2 144 49.3
Manes.04G092801 Manihot esculenta HOM05D006427 ORTHO05D008147 1.7e-25 119.8 151 51.0
Peaxi162Scf00128g01753 Petunia axillaris HOM05D006427 ORTHO05D008147 3.9e-25 118.6 144 52.8
Sp2g15860 Schrenkiella parvula HOM05D006427 ORTHO05D008147 5.0e-25 118.2 110 58.2
AL5G15590 Arabidopsis lyrata HOM05D006427 ORTHO05D008147 6.6e-25 117.9 140 49.3
Atru.chr12.1402 Acer truncatum HOM05D006427 ORTHO05D008147 1.9e-24 116.3 78 66.7
PGSC0003DMG400026417 Solanum tuberosum HOM05D006427 ORTHO05D008147 3.3e-24 115.5 82 67.1
BraA02t08479Z Brassica rapa HOM05D006427 ORTHO05D008147 2.1e-23 112.8 143 47.6
Solyc09g092110.4 Solanum lycopersicum HOM05D006427 ORTHO05D008147 2.1e-23 112.8 80 67.5
PGR042G0015 Punica granatum HOM05D006427 ORTHO05D008147 2.8e-23 112.5 115 52.2
SEGI_30338 Sequoiadendron giganteum HOM05D006427 ORTHO05D008147 3.6e-23 112.1 87 59.8
CANSAT64G0982 Cannabis sativa HOM05D006427 ORTHO05D008147 4.7e-23 111.7 147 47.6
HanXRQChr16g0499601 Helianthus annuus HOM05D006427 ORTHO05D008147 4.7e-23 111.7 139 49.6
Sopen09g034980 Solanum pennellii HOM05D006427 ORTHO05D008147 4.7e-23 111.7 80 66.2
ECA234G1075 Erigeron canadensis HOM05D006427 ORTHO05D008147 6.2e-23 111.3 92 58.7
MSTRG.3040 Avicennia marina HOM05D006427 ORTHO05D008147 1.1e-22 110.5 134 49.3
MELO3C014813.2 Cucumis melo HOM05D006427 ORTHO05D008147 2.3e-22 109.4 145 51.0
Duzib187G0815 Durio zibethinus HOM05D006427 ORTHO05D008147 4.4e-21 105.1 146 46.6
Aa31LG2G5820 Aethionema arabicum HOM05D006427 ORTHO05D008147 1.7e-20 103.2 138 46.4
Os01g0102900 Oryza sativa ssp. japonica HOM05D006427 ORTHO05D008147 1.7e-20 103.2 122 47.5
Atru.chr5.1933 Acer truncatum HOM05D006427 ORTHO05D008147 2.4e-19 99.4 77 59.7
CBR_g20422 Chara braunii HOM05D006427 ORTHO05D008147 4.1e-19 98.6 141 39.0
SGA_v2.0_scaffold44G16952 Striga asiatica HOM05D006427 ORTHO05D008147 9.2e-19 97.4 132 46.2
Mapoly0029s0093 Marchantia polymorpha HOM05D006427 ORTHO05D008147 1.2e-18 97.1 106 47.2
SalBow4G0295 Salvia bowleyana HOM05D002416 ORTHO05D002554 3.5e-18 95.5 93 50.5
SalBow4G2027 Salvia bowleyana HOM05D002416 ORTHO05D002554 3.5e-18 95.5 117 45.3
Atru.chr6.2655 Acer truncatum HOM05D006427 ORTHO05D008147 6.0e-18 94.7 68 61.8
Migut.F00015 Erythranthe guttata HOM05D006427 ORTHO05D008147 1.6e-15 86.7 136 43.4
Hund04203 Selenicereus undatus HOM05D006427 ORTHO05D008147 4.7e-15 85.1 95 52.6
Aqoxy5G03161 Aquilegia oxysepala HOM05D006427 ORTHO05D008147 2.3e-14 82.8 69 60.9
Zm00001eb182180 Zea mays HOM05D006427 ORTHO05D008147 2.6e-13 79.3 91 46.2
Atru.chr9.488 Acer truncatum HOM05D006427 ORTHO05D008147 9.9e-13 77.4 77 54.5
COL.COLO4_13367 Corchorus olitorius HOM05D006427 ORTHO05D008147 1.3e-12 77.0 119 45.4
Zm00001eb138400 Zea mays HOM05D000461 ORTHO05D008147 1.3e-12 77.0 94 43.6
ClCG05G012680 Citrullus lanatus HOM05D006427 ORTHO05D008147 2.9e-12 75.9 119 45.4
Potri.014G145500 Populus trichocarpa HOM05D006427 ORTHO05D008147 2.7e-10 69.3 124 41.9
Sc03g0004990 Simmondsia chinensis HOM05D006427 ORTHO05D008147 1.0e-09 67.4 69 53.6
EL10Ac6g13399 Beta vulgaris HOM05D006427 ORTHO05D008147 3.9e-09 65.5 109 40.4
Atru.chr1.3017 Acer truncatum HOM05D006427 ORTHO05D008147 6.6e-09 64.7 94 54.3
Zm00001eb127000 Zea mays HOM05D006427 ORTHO05D008147 2.5e-08 62.8 102 41.2
BolC2t11399H Brassica oleracea HOM05D006427 ORTHO05D008147 1.4e-06 57.0 109 40.4
Zm00001eb390880 Zea mays HOM05D001191 ORTHO05D000979 6.8e-06 54.7 88 38.6


User provided reference genes

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