Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.6e-158 562.8 288 100.0
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 2.0e-134 482.6 272 93.4
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 1.9e-111 406.4 251 85.7
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 8.1e-91 337.8 251 73.3
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 5.8e-89 331.6 251 70.1
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.8e-89 331.6 253 70.0
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 5.8e-89 331.6 251 70.9
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.0e-88 330.9 251 72.1
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 1.9e-87 326.6 251 70.1
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 4.6e-86 322.0 251 70.9
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.3e-85 319.7 249 68.7
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.7e-85 318.2 252 67.1
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-83 313.9 209 85.2
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.9e-78 294.7 282 57.8
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.3e-76 288.9 248 63.3
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 1.3e-72 277.3 288 53.5
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.3e-72 277.3 280 58.2
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 2.2e-72 276.6 254 60.2
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 5.0e-72 275.4 251 60.6
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 8.5e-72 274.6 250 59.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 8.5e-72 274.6 279 58.4
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.4e-71 273.9 288 53.5
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 7.9e-70 268.1 282 56.7
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 1.4e-69 267.3 284 59.2
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 3.0e-69 266.2 247 60.3
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 8.8e-69 264.6 277 56.3
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.5e-68 263.8 284 56.0
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 2.6e-68 263.1 280 55.0
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.3e-68 262.7 250 59.2
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 1.7e-67 260.4 266 57.9
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 2.2e-67 260.0 280 54.6
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.1e-66 257.7 280 54.3
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 4.1e-66 255.8 244 59.4
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 3.4e-65 252.7 270 53.7
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 2.9e-64 249.6 248 56.9
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.8e-64 249.2 253 58.5
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 1.4e-63 247.3 250 56.8
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.2e-62 244.2 279 53.0
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.0e-61 241.1 248 56.5
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.4e-61 240.7 252 55.6
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 1.5e-60 237.3 252 57.5
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 2.6e-60 236.5 256 55.5
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.3e-60 236.1 279 50.5
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 9.7e-60 234.6 252 55.6
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 9.7e-60 234.6 252 54.8
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 2.2e-59 233.4 239 54.0
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 4.8e-59 232.3 255 56.5
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.4e-58 230.7 241 54.4
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.1e-58 229.6 280 48.6
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 1.6e-57 227.3 281 52.7
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.5e-57 226.1 282 48.2
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.5e-57 225.7 283 48.4
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.0e-56 224.6 257 53.7
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 1.3e-56 224.2 281 53.0
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.2e-56 223.4 247 55.1
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 3.8e-56 222.6 253 54.5
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 5.0e-56 222.2 278 50.0
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 5.0e-56 222.2 233 54.1
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 6.5e-56 221.9 255 53.3
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 8.5e-56 221.5 251 55.0
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.5e-55 220.7 252 53.6
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 1.9e-55 220.3 281 52.0
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 3.2e-55 219.5 252 53.6
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 4.2e-55 219.2 244 52.9
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 9.4e-55 218.0 268 51.9
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 8.0e-54 214.9 257 51.8
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 8.0e-54 214.9 244 52.9
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.0e-53 214.5 255 51.0
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.4e-53 214.2 255 52.9
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 1.8e-53 213.8 235 53.6
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 2.3e-53 213.4 257 52.5
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 4.0e-53 212.6 280 47.9
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 8.8e-53 211.5 258 54.3
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.3e-51 207.6 189 58.2
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.7e-51 207.2 256 49.6
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 1.7e-51 207.2 241 51.9
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.7e-51 206.1 165 70.3
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 4.8e-51 205.7 294 44.2
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 6.3e-51 205.3 255 51.0
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 2.4e-50 203.4 274 49.3
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 9.1e-50 201.4 247 51.0
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.6e-49 200.7 280 47.5
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 3.5e-49 199.5 259 49.0
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 5.9e-49 198.7 279 47.7
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.3e-48 197.6 251 51.4
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 6.5e-48 195.3 280 45.4
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 8.5e-48 194.9 250 49.6
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 1.1e-47 194.5 230 50.9
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.5e-47 194.1 243 52.3
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.2e-47 192.6 246 51.2
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.2e-47 192.6 244 49.6
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 1.8e-45 187.2 280 47.1
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 3.0e-45 186.4 280 46.8
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 8.8e-45 184.9 243 49.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 1.2e-44 184.5 280 46.8
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 4.4e-44 182.6 245 50.2
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 4.4e-44 182.6 254 46.9
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 5.7e-44 182.2 263 48.3
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 5.7e-44 182.2 247 46.2
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 2.2e-43 180.3 245 49.8
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 2.2e-43 180.3 225 50.7
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 6.3e-43 178.7 225 53.8
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 6.3e-43 178.7 247 46.2
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 4.1e-42 176.0 286 44.1
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 3.5e-41 172.9 282 41.8
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.3e-40 171.0 252 46.4
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.7e-40 170.6 247 45.3
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.8e-40 169.5 283 41.3
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 3.8e-40 169.5 282 40.8
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 8.5e-40 168.3 252 45.2
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 2.8e-38 163.3 284 39.4
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 2.3e-37 160.2 256 43.0
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.2e-36 157.9 247 44.9
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.4e-34 151.0 247 42.1
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.3e-32 144.4 259 42.1
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.1e-31 141.4 144 57.6
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.8e-30 136.7 151 53.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 3.6e-30 136.3 225 40.4
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.8e-29 134.0 136 54.4
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-27 127.9 157 45.9
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 9.2e-26 121.7 182 44.5
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 5.0e-24 115.9 152 44.1
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 2.1e-22 110.5 259 34.7
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 4.4e-20 102.8 165 44.8
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.2e-18 96.7 160 43.1
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 2.7e-17 93.6 126 46.8
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.6e-16 89.0 83 59.0
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 4.6e-09 66.2 87 47.1
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.1e-07 61.6 50 62.0
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 1.6e-06 57.8 223 27.8
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 8.1e-06 55.5 158 31.6


User provided reference genes

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